MELO3C009868 (gene) Melon (DHL92) v4

Overview


Name	MELO3C009868
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Unknown protein
Location	chr04: 27492382 .. 27492561 (-)
RNA-Seq Expression	MELO3C009868
Synteny	MELO3C009868

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCTGAAACCAGAGAAATGGTTCTTGATGATCCCTTGAAATCTTCTGAAGGAAATCTAGTTAGTGATAAGAGTGGTGATCATTCTGAAATAGAGGCACCGCATGCTAATTTGGATGTGAAATGGTTCTCTGAAGATGAAGAAGCAATGAAGCTTGCAAAGATGATGCTTTTGTGA

mRNA sequence

ATGGAGTCTGAAACCAGAGAAATGGTTCTTGATGATCCCTTGAAATCTTCTGAAGGAAATCTAGTTAGTGATAAGAGTGGTGATCATTCTGAAATAGAGGCACCGCATGCTAATTTGGATGTGAAATGGTTCTCTGAAGATGAAGAAGCAATGAAGCTTGCAAAGATGATGCTTTTGTGA

Coding sequence (CDS)

ATGGAGTCTGAAACCAGAGAAATGGTTCTTGATGATCCCTTGAAATCTTCTGAAGGAAATCTAGTTAGTGATAAGAGTGGTGATCATTCTGAAATAGAGGCACCGCATGCTAATTTGGATGTGAAATGGTTCTCTGAAGATGAAGAAGCAATGAAGCTTGCAAAGATGATGCTTTTGTGA

Protein sequence

MESETREMVLDDPLKSSEGNLVSDKSGDHSEIEAPHANLDVKWFSEDEEAMKLAKMMLL

Homology

[Close]

BLAST of MELO3C009868 vs. NCBI nr
Match: KAA0053761.1 (putative beta-tubulin polyglutamylase [Cucumis melo var. makuwa] >TYK25640.1 putative beta-tubulin polyglutamylase [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 8.9e-23
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   MESETREMVLDDPLKSSEGNLVSDKSGDHSEIEAPHANLDVKWFSEDEEAMKLAKMMLL 60
           MESETREMVLDDPLKSSEGNLVSDKSGDHSEIEAPHANLDVKWFSEDEEAMKLAKMMLL
Sbjct: 132 MESETREMVLDDPLKSSEGNLVSDKSGDHSEIEAPHANLDVKWFSEDEEAMKLAKMMLL 190

[Close]

BLAST of MELO3C009868 vs. NCBI nr
Match: XP_038906922.1 (interaptin-like isoform X1 [Benincasa hispida])

HSP 1 Score: 61.2 bits (147), Expect = 3.4e-06
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 1   MESETREMVLDDPLKSSEGNLVSDKSGDHSEIEAPHANLDVKWFSEDEEAMKLAK 56
           +  E +EMVLDDPLKSSE    +  +GD +  EAPHAN DVK FSEDEEA + +K
Sbjct: 277 LSEEEQEMVLDDPLKSSEEKPATANNGDDTGTEAPHANSDVKCFSEDEEANEASK 331

[Close]

BLAST of MELO3C009868 vs. NCBI nr
Match: XP_038906923.1 (interaptin-like isoform X2 [Benincasa hispida])

HSP 1 Score: 61.2 bits (147), Expect = 3.4e-06
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 1   MESETREMVLDDPLKSSEGNLVSDKSGDHSEIEAPHANLDVKWFSEDEEAMKLAK 56
           +  E +EMVLDDPLKSSE    +  +GD +  EAPHAN DVK FSEDEEA + +K
Sbjct: 274 LSEEEQEMVLDDPLKSSEEKPATANNGDDTGTEAPHANSDVKCFSEDEEANEASK 328

[Close]

BLAST of MELO3C009868 vs. NCBI nr
Match: XP_031740824.1 (midasin-like [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 5.8e-06
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 1   MESETREMVLDDPLKSSEGNLVSDKSGDHSEIEAPHANLDVKWFSEDEEAMKLAK 56
           +  E  EMVLDD LKS + N++S KS D S+IEAPHAN DVK FSEDE+  +++K
Sbjct: 275 LSEEEPEMVLDDLLKSFDENVISAKSVDDSKIEAPHANSDVKCFSEDEKVNEVSK 329

[Close]

BLAST of MELO3C009868 vs. NCBI nr
Match: XP_031745538.1 (uncharacterized protein LOC116405935 [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-04
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 7  EMVLDDPLKSSEGNLVSDKSGDHSEIEAPHANLDVKWFSEDEEAMKLAK 56
          EMVLDD LKS + N++S KS D S+ EAPHAN DV+ FSEDE+  +++K
Sbjct: 40 EMVLDDLLKSFDENVISAKSVDDSKTEAPHANSDVQCFSEDEKVNEVSK 88

[Close]

BLAST of MELO3C009868 vs. ExPASy TrEMBL
Match: A0A5D3DQU3 (Putative beta-tubulin polyglutamylase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G008000 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.3e-23
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   MESETREMVLDDPLKSSEGNLVSDKSGDHSEIEAPHANLDVKWFSEDEEAMKLAKMMLL 60
           MESETREMVLDDPLKSSEGNLVSDKSGDHSEIEAPHANLDVKWFSEDEEAMKLAKMMLL
Sbjct: 132 MESETREMVLDDPLKSSEGNLVSDKSGDHSEIEAPHANLDVKWFSEDEEAMKLAKMMLL 190

[Close]

BLAST of MELO3C009868 vs. ExPASy TrEMBL
Match: A0A0A0LCS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G825130 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.6e-14
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 0


Query: 1   MESETREMVLDDPLKSSEGNLVSDKSGDHSEIEAPHANLDVKWFSEDEEA 51
           M+SETREMVLDDPLKSSE NLV DKSGDH+EIEAPHANLDV  FSEDEEA
Sbjct: 123 MKSETREMVLDDPLKSSEENLVRDKSGDHTEIEAPHANLDVTCFSEDEEA 172

[Close]

BLAST of MELO3C009868 vs. ExPASy TrEMBL
Match: A0A0A0KN79 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G169000 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.9e-05
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 7  EMVLDDPLKSSEGNLVSDKSGDHSEIEAPHANLDVKWFSEDEEAMKLAK 56
          EMVLDD LKS + N++S KS D S  EAPHAN DVK FSEDE+  +++K
Sbjct: 23 EMVLDDLLKSFDENVISAKSVDDSITEAPHANSDVKCFSEDEKVNEVSK 71

[Close]

BLAST of MELO3C009868 vs. ExPASy TrEMBL
Match: A0A5A7UN97 (Putative beta-tubulin polyglutamylase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00410 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.0e-04
Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 1   MESETREMVLDDPLKSSEGNLVSDKSGDHSEIEAPHANLDVKWFSEDE--EAMKLAKM 57
           +  E  E+VLDD LKSS+ N+V+ KS D SE EA HANLDVK FSED+  EA K  ++
Sbjct: 275 LSEEEPEIVLDDLLKSSDENVVTAKSVDDSETEALHANLDVKCFSEDKVNEASKAVEI 332

[Close]

BLAST of MELO3C009868 vs. ExPASy TrEMBL
Match: A0A1S3CT90 (probable beta-tubulin polyglutamylase OS=Cucumis melo OX=3656 GN=LOC103504683 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.0e-04
Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 1   MESETREMVLDDPLKSSEGNLVSDKSGDHSEIEAPHANLDVKWFSEDE--EAMKLAKM 57
           +  E  E+VLDD LKSS+ N+V+ KS D SE EA HANLDVK FSED+  EA K  ++
Sbjct: 275 LSEEEPEIVLDDLLKSSDENVVTAKSVDDSETEALHANLDVKCFSEDKVNEASKAVEI 332

The following BLAST results are available for this feature:

BLAST of MELO3C009868 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053761.1	8.9e-23	100.00	putative beta-tubulin polyglutamylase [Cucumis melo var. makuwa] >TYK25640.1 put...	[more]
XP_038906922.1	3.4e-06	58.18	interaptin-like isoform X1 [Benincasa hispida]	[more]
XP_038906923.1	3.4e-06	58.18	interaptin-like isoform X2 [Benincasa hispida]	[more]
XP_031740824.1	5.8e-06	58.18	midasin-like [Cucumis sativus]	[more]
XP_031745538.1	1.4e-04	59.18	uncharacterized protein LOC116405935 [Cucumis sativus]	[more]

BLAST of MELO3C009868 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C009868 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DQU3	4.3e-23	100.00	Putative beta-tubulin polyglutamylase OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A0A0LCS7	3.6e-14	88.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G825130 PE=4 SV=1	[more]
A0A0A0KN79	6.9e-05	61.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G169000 PE=4 SV=1	[more]
A0A5A7UN97	2.0e-04	56.90	Putative beta-tubulin polyglutamylase OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3CT90	2.0e-04	56.90	probable beta-tubulin polyglutamylase OS=Cucumis melo OX=3656 GN=LOC103504683 PE...	[more]

BLAST of MELO3C009868 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C009868.1	MELO3C009868.1	mRNA