MELO3C009751 (gene) Melon (DHL92) v4

Overview


Name	MELO3C009751
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	exopolygalacturonase-like
Location	chr04: 28497015 .. 28498550 (+)
RNA-Seq Expression	MELO3C009751
Synteny	MELO3C009751

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTGATATCAAATTTTGTGGCATTACTGCCATTGTTGTTATTGTTGGTGTCTAATTCTAAAGCTCAATCTACGGGTGGTGTTTTTGATGTCACAACATACGATGCTAAACCTAATGCTGATATAACTACGGTATGAGTACTTTAGGTGGATGAACGATTTTAATTGATACAAATTAAAACATTTTAGTTATCAAATGAAATGATTTAATTTTACAGGCTTTGGCAAGTGCATGGAAGGAGGTATGTGCATCAACCACTCCAAGTAAAGTTTTTGGATTCCAAAAGGAAGATATGGATTAAGTCAATCCATCCTTAAAGGCCCTTGCATGTAAAAGTTCTATTGAACTACAAATCGAAGGGAAGAGATGGGTTCCTTTTGGAATATGTCGACCAATTGACAGTGTCAGGTACTGGAGTTTTGGTTGGCCAAGGAAAAGCAGGTTGGGAAAAGAATGATTATGATTTAAAGAAAAGATGCACCAAACTTCCCATGGTAATTGCATGCGTTAATTACAATAGGTTTATGTTTTTTAGCCTAATATTCTTACATATAATTTAACCACTACAGATTTTTTCAATCATCAAACATGATTTAACTCAAGAATTCTTTTTTTTTTTCTTAATGATCAGAATTTGAAGTTGAATTTTATCACAAATTCAATAGTAAAGGACATAATGTCATTGGATAGCAAGAATTATCATATTAATCTTATATCTTTTGGGTTGTAAGAATCTTACCTTTGACCACATGACAATTACTACACCAGAGAACAGTCCCAACATCGATGGAACTCACATGAGTAGTTCAAAGGAGATTAACATTCTCAATACCAATATCACAGTCGAAGATAATTGTATATCGGTGGGAGATACCAACAAACAGATAGTTATTAGCAATATTACTTGCGAATCGGGGCATGGAATTAGCATAGGATATTTGGGAAAATAGCAAGGAAAAAAAGTGGTAGGAGTGACGATGAAAAAATGTAAATTGGCCAGTACTACAAACGGTGTTCGAATCAAAACATGGCCAGATTCTGTTGGCACGTTCCCAACCACTGACATGCATTTTGAAGATATAGAAATGGTTAATGTGAGTAATCCTATCATCATAGACCAAGAATATTGTCCATGGAACCAATGCAACCGAAAGGTACATCTAAAATTAGGCCTCCTTAGTTTTGAACTTATTAATTAACTCAAAAGACATCAATAATATTATTGTTCGAGTTATGTATTTTTATTATGTTTTCTTTGTTTGTTCAGGTTCCATAAAAAATTAAGATCAACAAAGTAAGCTTCAAGGATATCACATACACTTCTGTAACTCCGACTGCAGTCAAACTTGTTTGCAGTGCAAGTAAATCCATGTGAGGGCCGAGTGGAAGTTGTTGATATTGGCCTCACTTATAGTGAAAGTGAAGGTCAAATTAAGTCGCAGTATGCAAATGTGAAACTCGCCATTTTAACAAAACAAAATCCCTCAATCTGTGATGAACCTGCACCAGCTGATAGTCCATCAACCGATTGA

mRNA sequence

ATGGGATTGATATCAAATTTTGTGGCATTACTGCCATTGTTGTTATTGTTGGTGTCTAATTCTAAAGCTCAATCTACGGGTGGTGTTTTTGATGTCACAACATACGATGCTAAACCTAATGCTGATATAACTACGGTATGAGTACTTTAGGTGGATGAACGATTTTAATTGATACAAATTAAAACATTTTAGTTATCAAATGAAATGATTTAATTTTACAGGCTTTGGCAAGTGCATGGAAGGAGGTATGTGCATCAACCACTCCAAGCCCTTGCATGTAAAAGTTCTATTGAACTACAAATCGAAGGGAAGAGATGGGTTCCTTTTGGAATATGTCGACCAATTGACAGTGTCAGGTACTGGAGTTTTGGTTGGCCAAGGAAAAGCAGGTTGGGAAAAGAATGATTATGATTTAAAGAAAAGATGCACCAAACTTCCCATGAATTTGAAGTTGAATTTTATCACAAATTCAATAGTAAAGGACATAATGTCATTGGATAGCAAGAATTATCATATTAATCTTATATCTTTTGGGTTGTAAGAATCTTACCTTTGACCACATGACAATTACTACACCAGAGAACAGTCCCAACATCGATGGAACTCACATGAGTAGTTCAAAGGAGATTAACATTCTCAATACCAATATCACAGTCGAAGATAATTGTATATCGGTGGGAGATACCAACAAACAGATAGTTATTAGCAATATTACTTGCGAATCGGGGCATGGAATTAGCATAGGATATTTGGGAAAATAGCAAGGAAAAAAAGTGGTAGGAGTGACGATGAAAAAATGTAAATTGGCCAGTACTACAAACGGTGTTCGAATCAAAACATGGCCAGATTCTGTTGGCACGTTCCCAACCACTGACATGCATTTTGAAGATATAGAAATGGTTAATGTGAGTAATCCTATCATCATAGACCAAGAATATTGTCCATGGAACCAATGCAACCGAAAGGTTCCATAAAAAATTAAGATCAACAAAGTAAGCTTCAAGGATATCACATACACTTCTGTAACTCCGACTGCAGTCAAACTTGTTTGCAGTGCAAGTAAATCCATGTGAGGGCCGAGTGGAAGTTGTTGATATTGGCCTCACTTATAGTGAAAGTGAAGGTCAAATTAAGTCGCAGTATGCAAATGTGAAACTCGCCATTTTAACAAAACAAAATCCCTCAATCTGTGATGAACCTGCACCAGCTGATAGTCCATCAACCGATTGA

Coding sequence (CDS)

ATGGAAGGAGGTATGTGCATCAACCACTCCAAGCCCTTGCATGTAAAAGTTCTATTGAACTACAAATCGAAGGGAAGAGATGGGTTCCTTTTGGAATATGTCGACCAATTGACAGTGTCAGGTACTGGAGTTTTGGTTGGCCAAGGAAAAGCAGGTTGGGAAAAGAATGATTATGATTTAAAGAAAAGATGCACCAAACTTCCCATGAATTTGAAGTTGAATTTTATCACAAATTCAATAGTAAAGGACATAATGTCATTGGATAGCAAGAATTATCATATTAATCTTATATCTTTTGGGTTGTAA

Protein sequence

MEGGMCINHSKPLHVKVLLNYKSKGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLISFGL

Homology

[Close]

BLAST of MELO3C009751 vs. NCBI nr
Match: KAA0045594.1 (exopolygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 3.0e-26
Identity = 63/74 (85.14%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 24  KGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKD 83
           KG    LLEYVDQLTVSGTGVL GQGKAGWEKND  LKK CTKLPMNLKLNF+TNSIVKD
Sbjct: 100 KGDGLLLLEYVDQLTVSGTGVLDGQGKAGWEKNDCHLKKECTKLPMNLKLNFVTNSIVKD 159

Query: 84  IMSLDSKNYHINLI 98
           I SLDSKNYHINL+
Sbjct: 160 ITSLDSKNYHINLL 173

[Close]

BLAST of MELO3C009751 vs. NCBI nr
Match: XP_016903689.1 (PREDICTED: exopolygalacturonase-like, partial [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 3.0e-26
Identity = 63/74 (85.14%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 24  KGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKD 83
           KG    LLEYVDQLTVSGTGVL GQGKAGWEKND  LKK CTKLPMNLKLNF+TNSIVKD
Sbjct: 55  KGDGLLLLEYVDQLTVSGTGVLDGQGKAGWEKNDCHLKKECTKLPMNLKLNFVTNSIVKD 114

Query: 84  IMSLDSKNYHINLI 98
           I SLDSKNYHINL+
Sbjct: 115 ITSLDSKNYHINLL 128

[Close]

BLAST of MELO3C009751 vs. NCBI nr
Match: KAA0045610.1 (exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK02646.1 exopolygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 3.0e-26
Identity = 63/74 (85.14%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 24  KGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKD 83
           KG    LLEYVDQLTVSGTGVL GQGKAGWEKND  LKK CTKLPMNLKLNF+TNSIVKD
Sbjct: 100 KGDGLLLLEYVDQLTVSGTGVLDGQGKAGWEKNDCHLKKECTKLPMNLKLNFVTNSIVKD 159

Query: 84  IMSLDSKNYHINLI 98
           I SLDSKNYHINL+
Sbjct: 160 ITSLDSKNYHINLL 173

[Close]

BLAST of MELO3C009751 vs. NCBI nr
Match: KAA0045593.1 (exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK28803.1 exopolygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 3.0e-26
Identity = 63/74 (85.14%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 24  KGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKD 83
           KG    LLEYVDQLTVSGTGVL GQGKAGWEKND  LKK CTKLPMNLKLNF+TNSIVKD
Sbjct: 100 KGDGLLLLEYVDQLTVSGTGVLDGQGKAGWEKNDCHLKKECTKLPMNLKLNFVTNSIVKD 159

Query: 84  IMSLDSKNYHINLI 98
           I SLDSKNYHINL+
Sbjct: 160 ITSLDSKNYHINLL 173

[Close]

BLAST of MELO3C009751 vs. NCBI nr
Match: KAA0045608.1 (exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK02648.1 exopolygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 3.0e-26
Identity = 63/74 (85.14%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 24  KGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKD 83
           KG    LLEYVDQLTVSGTGVL GQGKAGWEKND  LKK CTKLPMNLKLNF+TNSIVKD
Sbjct: 100 KGDGLLLLEYVDQLTVSGTGVLDGQGKAGWEKNDCHLKKECTKLPMNLKLNFVTNSIVKD 159

Query: 84  IMSLDSKNYHINLI 98
           I SLDSKNYHINL+
Sbjct: 160 ITSLDSKNYHINLL 173

[Close]

BLAST of MELO3C009751 vs. ExPASy Swiss-Prot
Match: Q6H9K0 (Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.3e-12
Identity = 34/72 (47.22%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 27  DGFLLEY-VDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIM 86
           DG++  Y +D LTVSGTG L GQG+  W KN+ D    C    MNL+ +F+ +++V+DI 
Sbjct: 86  DGWVSFYRIDGLTVSGTGTLDGQGQTAWAKNNCDKNPNCKHAAMNLRFDFLKHAMVRDIT 145

Query: 87  SLDSKNYHINLI 98
           SL+SK +HIN++
Sbjct: 146 SLNSKMFHINVL 157

[Close]

BLAST of MELO3C009751 vs. ExPASy Swiss-Prot
Match: P24548 (Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.6e-12
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 22  KSKGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKND-YDLKKRCTKLPMNLKLNFITNSI 81
           K KG     L  +D LT+ G GV  GQGK+ W +ND +     C  L MNL+L  +TNSI
Sbjct: 60  KIKGLGWINLNKIDLLTIFGGGVFDGQGKSAWVQNDCHKNGPICKTLSMNLRLYAVTNSI 119

Query: 82  VKDIMSLDSKNYHINLI 98
           ++D+ +LDSKN+H+N+I
Sbjct: 120 LRDVTTLDSKNFHVNVI 136

[Close]

BLAST of MELO3C009751 vs. ExPASy Swiss-Prot
Match: Q05967 (Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-11
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 34  VDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYH 93
           +DQ T+SG G+L GQ  A WE       K+C KLP NL  N +TNS +KDI +LDSK++H
Sbjct: 110 LDQFTMSGGGILDGQAAAAWECKQ---SKKCNKLPNNLSFNSLTNSTIKDITTLDSKSFH 169

Query: 94  INL 97
           +N+
Sbjct: 170 VNV 169

[Close]

BLAST of MELO3C009751 vs. ExPASy Swiss-Prot
Match: P35337 (Polygalacturonase OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.3e-10
Identity = 27/77 (35.06%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 23  SKGRDGFLL-EYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIV 82
           ++G+D +++ E ++   ++G G   G+G A W+ N+      C KLP++++ +F+ N+ +
Sbjct: 92  TQGKDRWVVFEKINGFKLNGGGTFDGEGNAAWKANNCHKTFECKKLPISVRFDFVDNAEI 151

Query: 83  KDIMSLDSKNYHINLIS 99
           KD+ SLD+KN+H N+IS
Sbjct: 152 KDVTSLDAKNFHFNVIS 168

[Close]

BLAST of MELO3C009751 vs. ExPASy Swiss-Prot
Match: Q39766 (Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.2e-08
Identity = 25/65 (38.46%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 34  VDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYH 93
           V+   + G G+  GQG   +EKN  + ++  +KLP+N++ +F+TN++++DI S DSK +H
Sbjct: 115 VENFKMFGGGIFDGQGSIAYEKNTCENREFRSKLPVNIRFDFVTNALIQDITSKDSKLFH 174

Query: 94  INLIS 99
           IN+ +
Sbjct: 175 INVFA 179

[Close]

BLAST of MELO3C009751 vs. ExPASy TrEMBL
Match: A0A5A7TRZ0 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00600 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.4e-26
Identity = 63/74 (85.14%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 24  KGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKD 83
           KG    LLEYVDQLTVSGTGVL GQGKAGWEKND  LKK CTKLPMNLKLNF+TNSIVKD
Sbjct: 100 KGDGLLLLEYVDQLTVSGTGVLDGQGKAGWEKNDCHLKKECTKLPMNLKLNFVTNSIVKD 159

Query: 84  IMSLDSKNYHINLI 98
           I SLDSKNYHINL+
Sbjct: 160 ITSLDSKNYHINLL 173

[Close]

BLAST of MELO3C009751 vs. ExPASy TrEMBL
Match: A0A5D3DYI3 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold303G00050 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.4e-26
Identity = 63/74 (85.14%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 24  KGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKD 83
           KG    LLEYVDQLTVSGTGVL GQGKAGWEKND  LKK CTKLPMNLKLNF+TNSIVKD
Sbjct: 100 KGDGLLLLEYVDQLTVSGTGVLDGQGKAGWEKNDCHLKKECTKLPMNLKLNFVTNSIVKD 159

Query: 84  IMSLDSKNYHINLI 98
           I SLDSKNYHINL+
Sbjct: 160 ITSLDSKNYHINLL 173

[Close]

BLAST of MELO3C009751 vs. ExPASy TrEMBL
Match: A0A5D3BWP4 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00550 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.4e-26
Identity = 63/74 (85.14%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 24  KGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKD 83
           KG    LLEYVDQLTVSGTGVL GQGKAGWEKND  LKK CTKLPMNLKLNF+TNSIVKD
Sbjct: 100 KGDGLLLLEYVDQLTVSGTGVLDGQGKAGWEKNDCHLKKECTKLPMNLKLNFVTNSIVKD 159

Query: 84  IMSLDSKNYHINLI 98
           I SLDSKNYHINL+
Sbjct: 160 ITSLDSKNYHINLL 173

[Close]

BLAST of MELO3C009751 vs. ExPASy TrEMBL
Match: A0A5A7TR51 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G00990 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.4e-26
Identity = 63/74 (85.14%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 24  KGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKD 83
           KG    LLEYVDQLTVSGTGVL GQGKAGWEKND  LKK CTKLPMNLKLNF+TNSIVKD
Sbjct: 100 KGDGLLLLEYVDQLTVSGTGVLDGQGKAGWEKNDCHLKKECTKLPMNLKLNFVTNSIVKD 159

Query: 84  IMSLDSKNYHINLI 98
           I SLDSKNYHINL+
Sbjct: 160 ITSLDSKNYHINLL 173

[Close]

BLAST of MELO3C009751 vs. ExPASy TrEMBL
Match: A0A1S4E643 (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103504477 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.4e-26
Identity = 63/74 (85.14%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 24  KGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKD 83
           KG    LLEYVDQLTVSGTGVL GQGKAGWEKND  LKK CTKLPMNLKLNF+TNSIVKD
Sbjct: 55  KGDGLLLLEYVDQLTVSGTGVLDGQGKAGWEKNDCHLKKECTKLPMNLKLNFVTNSIVKD 114

Query: 84  IMSLDSKNYHINLI 98
           I SLDSKNYHINL+
Sbjct: 115 ITSLDSKNYHINLL 128

[Close]

BLAST of MELO3C009751 vs. TAIR 10
Match: AT2G15470.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 65.1 bits (157), Expect = 3.7e-11
Identity = 30/66 (45.45%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 33  YVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNY 92
           Y++ L++SG+G L GQGK  W  ND      C KL M +   F+ NS +KDI SL+SK  
Sbjct: 116 YINNLSISGSGTLDGQGKQSWPHNDCHTNPNCPKLAMTMGFAFVNNSNIKDITSLNSKMG 175

Query: 93  HINLIS 99
           H N  S
Sbjct: 176 HFNFFS 181

[Close]

BLAST of MELO3C009751 vs. TAIR 10
Match: AT2G15460.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 65.1 bits (157), Expect = 3.7e-11
Identity = 30/66 (45.45%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 33  YVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNY 92
           Y++ L++SG+G L GQGK  W  ND      C KL M +   F+ NS +KDI SL+SK  
Sbjct: 116 YINNLSISGSGTLDGQGKQSWPHNDCHTNPNCPKLAMTMGFAFVNNSNIKDITSLNSKMG 175

Query: 93  HINLIS 99
           H N  S
Sbjct: 176 HFNFFS 181

[Close]

BLAST of MELO3C009751 vs. TAIR 10
Match: AT2G15450.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 65.1 bits (157), Expect = 3.7e-11
Identity = 30/66 (45.45%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 33  YVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNY 92
           Y++ L++SG+G L GQGK  W  ND      C KL M +   F+ NS +KDI SL+SK  
Sbjct: 116 YINNLSISGSGTLDGQGKQSWPHNDCHTNPNCPKLAMTMGFAFVNNSNIKDITSLNSKMG 175

Query: 93  HINLIS 99
           H N  S
Sbjct: 176 HFNFFS 181

[Close]

BLAST of MELO3C009751 vs. TAIR 10
Match: AT4G13760.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 65.1 bits (157), Expect = 3.7e-11
Identity = 30/67 (44.78%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 32  EYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKN 91
           +Y++ L++SG+G L GQGK  W  ND      C KL M +   F+ NS +KDI SL+SK 
Sbjct: 115 KYINDLSISGSGTLDGQGKQSWPLNDCHKNPNCPKLAMTMGFAFVNNSNIKDITSLNSKM 174

Query: 92  YHINLIS 99
            H N  S
Sbjct: 175 GHFNFFS 181

[Close]

BLAST of MELO3C009751 vs. TAIR 10
Match: AT1G43090.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 63.9 bits (154), Expect = 8.3e-11
Identity = 30/66 (45.45%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 33  YVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNY 92
           Y++ L++SG+G L GQGK  W  ND      C KL M +   F+ NS +KDI SL+SK  
Sbjct: 116 YINNLSISGSGTLDGQGKYSWPLNDCHKNTNCPKLAMTMGFAFVNNSRIKDITSLNSKMG 175

Query: 93  HINLIS 99
           H N  S
Sbjct: 176 HFNFFS 181

The following BLAST results are available for this feature:

BLAST of MELO3C009751 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045594.1	3.0e-26	85.14	exopolygalacturonase-like [Cucumis melo var. makuwa]	[more]
XP_016903689.1	3.0e-26	85.14	PREDICTED: exopolygalacturonase-like, partial [Cucumis melo]	[more]
KAA0045610.1	3.0e-26	85.14	exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK02646.1 exopolygalactur...	[more]
KAA0045593.1	3.0e-26	85.14	exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK28803.1 exopolygalactur...	[more]
KAA0045608.1	3.0e-26	85.14	exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK02648.1 exopolygalactur...	[more]

BLAST of MELO3C009751 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6H9K0	3.3e-12	47.22	Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 S...	[more]
P24548	5.6e-12	46.75	Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1	[more]
Q05967	2.8e-11	50.79	Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1	[more]
P35337	5.3e-10	35.06	Polygalacturonase OS=Brassica napus OX=3708 PE=2 SV=1	[more]
Q39766	2.2e-08	38.46	Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1	[more]

BLAST of MELO3C009751 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TRZ0	1.4e-26	85.14	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5D3DYI3	1.4e-26	85.14	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5D3BWP4	1.4e-26	85.14	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5A7TR51	1.4e-26	85.14	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A1S4E643	1.4e-26	85.14	exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103504477 PE=3 SV=1	[more]

BLAST of MELO3C009751 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G15470.1	3.7e-11	45.45	Pectin lyase-like superfamily protein	[more]
AT2G15460.1	3.7e-11	45.45	Pectin lyase-like superfamily protein	[more]
AT2G15450.1	3.7e-11	45.45	Pectin lyase-like superfamily protein	[more]
AT4G13760.1	3.7e-11	44.78	Pectin lyase-like superfamily protein	[more]
AT1G43090.1	8.3e-11	45.45	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 3..100 e-value: 4.2E-8 score: 34.5
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 28..97 e-value: 1.1E-8 score: 34.6
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 6..97
None	No IPR available	PANTHER	PTHR31375:SF132	OS06G0509600 PROTEIN	coord: 6..97
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 28..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C009751.1	MELO3C009751.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity