MELO3C009251.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C009251.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	cyclin-dependent protein kinase inhibitor SMR4
Location	chr04: 33244616 .. 33245327 (+)
RNA-Seq Expression	MELO3C009251.jh1
Synteny	MELO3C009251.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCATTTATTTTTTCGGTTTCTATCAAACTCACACACCAATTTTTCAAATTCTAATTCTGATTCTCCTCCTCTCGCCACCCTCCTCCACGCTCTGTTCGGAGTTTCGAGTTTTCATTACCTTCTCAAAAACTTTACCAAATAAACCTCTCTATTATGGAATCGAAACAGGGAACTGGGACTGGGAATTGGGAGGAAGAGTGTTCGACGCCGACTCGATGGGAGTGCCGGATTCCGGCGGTGTTTAACTGCCCTCCGCCGCCGAAGAAGAAGAATGGAAATGATGGGAAGAAGCGGGAACCACCGAAACATGGCTATTTTCAGCCACCTGATCTTGAGGCTCTGTTTTCTGTCCCTCCCAGAAGGGAAGCCTGCGCTTAATTTTTATGCTCTGTTTTAGGGTTTTAAGGAAATGGGTTTTTTTGCTTCTCGTTTGATTAGATTGTTCTATTGAATTGTGAATACTTTTGAGAGAGTTTGAAAGTTGATTTGGGTTTTTTAGTTTGCCATTTATGAGAATTTGTATTGAGAATGGAAGAATCTTGGGTTGAAATATTGTGGGTTTTAATTGGGGAAACATAAAAGTTCATGTTTCTCATTGGACAAATTCATGTTTAAATCCTTACCCAAGTCTTTGATTTTATTTATTTGTAACTTCAAATTTTCAAAACCTGGTTTGGGCATAATCAATTGTATGTCTAATTATAGGTTTG

mRNA sequence

ATTCATTTATTTTTTCGGTTTCTATCAAACTCACACACCAATTTTTCAAATTCTAATTCTGATTCTCCTCCTCTCGCCACCCTCCTCCACGCTCTGTTCGGAGTTTCGAGTTTTCATTACCTTCTCAAAAACTTTACCAAATAAACCTCTCTATTATGGAATCGAAACAGGGAACTGGGACTGGGAATTGGGAGGAAGAGTGTTCGACGCCGACTCGATGGGAGTGCCGGATTCCGGCGGTGTTTAACTGCCCTCCGCCGCCGAAGAAGAAGAATGGAAATGATGGGAAGAAGCGGGAACCACCGAAACATGGCTATTTTCAGCCACCTGATCTTGAGGCTCTGTTTTCTGTCCCTCCCAGAAGGGAAGCCTGCGCTTAATTTTTATGCTCTGTTTTAGGGTTTTAAGGAAATGGGTTTTTTTGCTTCTCGTTTGATTAGATTGTTCTATTGAATTGTGAATACTTTTGAGAGAGTTTGAAAGTTGATTTGGGTTTTTTAGTTTGCCATTTATGAGAATTTGTATTGAGAATGGAAGAATCTTGGGTTGAAATATTGTGGGTTTTAATTGGGGAAACATAAAAGTTCATGTTTCTCATTGGACAAATTCATGTTTAAATCCTTACCCAAGTCTTTGATTTTATTTATTTGTAACTTCAAATTTTCAAAACCTGGTTTGGGCATAATCAATTGTATGTCTAATTATAGGTTTG

Coding sequence (CDS)

ATGGAATCGAAACAGGGAACTGGGACTGGGAATTGGGAGGAAGAGTGTTCGACGCCGACTCGATGGGAGTGCCGGATTCCGGCGGTGTTTAACTGCCCTCCGCCGCCGAAGAAGAAGAATGGAAATGATGGGAAGAAGCGGGAACCACCGAAACATGGCTATTTTCAGCCACCTGATCTTGAGGCTCTGTTTTCTGTCCCTCCCAGAAGGGAAGCCTGCGCTTAA

Protein sequence

MESKQGTGTGNWEEECSTPTRWECRIPAVFNCPPPPKKKNGNDGKKREPPKHGYFQPPDLEALFSVPPRREACA

Homology

[Close]

BLAST of MELO3C009251.jh1 vs. NCBI nr
Match: XP_031737830.1 (cyclin-dependent protein kinase inhibitor SMR4 [Cucumis sativus] >KAE8651008.1 hypothetical protein Csa_002137 [Cucumis sativus])

HSP 1 Score: 146 bits (368), Expect = 4.84e-44
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 1  MESKQGTGTGNWEEECSTPTRWECRIPAVFNCPPPPKKKNGNDGKKREPPKHGYFQPPDL 60
          M+SKQGTG  N+EEECSTPTRWECRIPAVFNCPPPPKKKN   GKKREPPKHGYFQPPDL
Sbjct: 1  MDSKQGTG--NYEEECSTPTRWECRIPAVFNCPPPPKKKNATAGKKREPPKHGYFQPPDL 60

Query: 61 EALFSVPPRREACA 74
          EALFS+PPRREACA
Sbjct: 61 EALFSIPPRREACA 72

[Close]

BLAST of MELO3C009251.jh1 vs. NCBI nr
Match: XP_038905412.1 (cyclin-dependent protein kinase inhibitor SMR4 [Benincasa hispida])

HSP 1 Score: 142 bits (359), Expect = 1.14e-42
Identity = 65/74 (87.84%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 1  MESKQGTGTGNWEEECSTPTRWECRIPAVFNCPPPPKKKNGNDGKKREPPKHGYFQPPDL 60
          ME+KQG    N+EEECSTPTRWECRIPAVFNCPPPPKKK G DGKKR+PPKHGYFQPPDL
Sbjct: 1  MEAKQGPA--NYEEECSTPTRWECRIPAVFNCPPPPKKKIGTDGKKRDPPKHGYFQPPDL 60

Query: 61 EALFSVPPRREACA 74
          EALFSVPPRREACA
Sbjct: 61 EALFSVPPRREACA 72

[Close]

BLAST of MELO3C009251.jh1 vs. NCBI nr
Match: XP_023528630.1 (cyclin-dependent protein kinase inhibitor SMR4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132 bits (331), Expect = 2.34e-38
Identity = 63/76 (82.89%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 1  MESKQGTGTGNWEEECSTPTRWECRIPAVFNCPPPP---KKKNGNDGKKREPPKHGYFQP 60
          ME+KQG    N+EEECSTPTRWECRIPAVFNCPPPP   KKK  + GKKREPPKHGYFQP
Sbjct: 1  MEAKQGPA--NYEEECSTPTRWECRIPAVFNCPPPPPPKKKKAVSSGKKREPPKHGYFQP 60

Query: 61 PDLEALFSVPPRREAC 73
          PDLEALFSVPPRREAC
Sbjct: 61 PDLEALFSVPPRREAC 74

[Close]

BLAST of MELO3C009251.jh1 vs. NCBI nr
Match: XP_022983341.1 (cyclin-dependent protein kinase inhibitor SMR4 [Cucurbita maxima])

HSP 1 Score: 131 bits (330), Expect = 3.32e-38
Identity = 63/76 (82.89%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 1  MESKQGTGTGNWEEECSTPTRWECRIPAVFNCPPPP---KKKNGNDGKKREPPKHGYFQP 60
          ME+KQG    N+EEECSTPTRWECRIPAVFNCPPPP   KKK    GKKREPPKHGYFQP
Sbjct: 1  MEAKQGPA--NYEEECSTPTRWECRIPAVFNCPPPPPPKKKKAVGSGKKREPPKHGYFQP 60

Query: 61 PDLEALFSVPPRREAC 73
          PDLEALFSVPPRREAC
Sbjct: 61 PDLEALFSVPPRREAC 74

[Close]

BLAST of MELO3C009251.jh1 vs. NCBI nr
Match: KAG6580535.1 (Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017288.1 Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129 bits (323), Expect = 3.89e-37
Identity = 62/76 (81.58%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 1  MESKQGTGTGNWEEECSTPTRWECRIPAVFNCPPPP---KKKNGNDGKKREPPKHGYFQP 60
          ME+KQG    N+EEECSTPTRWECRIPAV NCPPPP   KKK  + GKKREPPKHGYFQP
Sbjct: 1  MEAKQGPA--NYEEECSTPTRWECRIPAVSNCPPPPPPKKKKAVSSGKKREPPKHGYFQP 60

Query: 61 PDLEALFSVPPRREAC 73
          PDLEALFSVPPRREAC
Sbjct: 61 PDLEALFSVPPRREAC 74

[Close]

BLAST of MELO3C009251.jh1 vs. ExPASy Swiss-Prot
Match: Q1JPP8 (Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 GN=SMR4 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.9e-13
Identity = 37/62 (59.68%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 13 EEECSTPTRWECRIPAVFNCPPPPKKKNGNDGKKREPPKHGYFQPPDLEALFSVPPRREA 72
          EE C+TP     RIP    CPPPP+KK     +KR+PP++GYFQPPDLE LF   PRREA
Sbjct: 12 EEGCTTPRSTMYRIPVASVCPPPPRKKL-MVVRKRDPPRNGYFQPPDLETLFYAQPRREA 71

Query: 73 CA 75
          CA
Sbjct: 72 CA 72

[Close]

BLAST of MELO3C009251.jh1 vs. ExPASy Swiss-Prot
Match: Q9LNX4 (Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 GN=SMR5 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-12
Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 11 NWEEECSTPTRWECRIPAVFNCPPPPKKKNG--NDGKKREPPKHGYFQPPDLEALFSVPP 70
          +++  C+TPTR +CRIPA   CPPP ++K      GKKREPPK GYFQPPDL+  FSV  
Sbjct: 17 DYQMGCTTPTRDDCRIPAYPPCPPPVRRKRSLLGFGKKREPPKKGYFQPPDLDLFFSVVA 76

Query: 71 RREA 73
            +A
Sbjct: 77 ASQA 80

[Close]

BLAST of MELO3C009251.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LAJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734160 PE=4 SV=1)

HSP 1 Score: 146 bits (368), Expect = 3.18e-43
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 1   MESKQGTGTGNWEEECSTPTRWECRIPAVFNCPPPPKKKNGNDGKKREPPKHGYFQPPDL 60
           M+SKQGTG  N+EEECSTPTRWECRIPAVFNCPPPPKKKN   GKKREPPKHGYFQPPDL
Sbjct: 87  MDSKQGTG--NYEEECSTPTRWECRIPAVFNCPPPPKKKNATAGKKREPPKHGYFQPPDL 146

Query: 61  EALFSVPPRREACA 74
           EALFS+PPRREACA
Sbjct: 147 EALFSIPPRREACA 158

[Close]

BLAST of MELO3C009251.jh1 vs. ExPASy TrEMBL
Match: A0A6J1J1Y0 (cyclin-dependent protein kinase inhibitor SMR4 OS=Cucurbita maxima OX=3661 GN=LOC111481954 PE=4 SV=1)

HSP 1 Score: 131 bits (330), Expect = 1.61e-38
Identity = 63/76 (82.89%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 1  MESKQGTGTGNWEEECSTPTRWECRIPAVFNCPPPP---KKKNGNDGKKREPPKHGYFQP 60
          ME+KQG    N+EEECSTPTRWECRIPAVFNCPPPP   KKK    GKKREPPKHGYFQP
Sbjct: 1  MEAKQGPA--NYEEECSTPTRWECRIPAVFNCPPPPPPKKKKAVGSGKKREPPKHGYFQP 60

Query: 61 PDLEALFSVPPRREAC 73
          PDLEALFSVPPRREAC
Sbjct: 61 PDLEALFSVPPRREAC 74

[Close]

BLAST of MELO3C009251.jh1 vs. ExPASy TrEMBL
Match: A0A7N2M7Y9 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.68e-23
Identity = 42/62 (67.74%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 13 EEECSTPTRWECRIPAVFNCPPPPKKKNGNDGKKREPPKHGYFQPPDLEALFSVPPRREA 72
          E+ CSTP R EC+IP V  CPPPPKKK+ + G KR+PPK+GYFQPPDL+A+F++PPRREA
Sbjct: 8  EDRCSTPKRRECQIPVVVVCPPPPKKKSAS-GMKRDPPKNGYFQPPDLDAIFTMPPRREA 67

Query: 73 CA 74
           A
Sbjct: 68 WA 68

[Close]

BLAST of MELO3C009251.jh1 vs. ExPASy TrEMBL
Match: A0A540NAX5 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_006159 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.18e-22
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 13 EEECSTPTRWECRIPAVFNCPPPPKKKNGNDGKKREPPKHGYFQPPDLEALFSVPPRREA 72
          EE+C+TP   ECRIP V  CPPPPKKK   + KKREPPK+GYFQPPDL+ALF++PPR ++
Sbjct: 2  EEDCTTPKWRECRIPEVNMCPPPPKKKAAGE-KKREPPKNGYFQPPDLDALFALPPRTQS 61

[Close]

BLAST of MELO3C009251.jh1 vs. ExPASy TrEMBL
Match: I1KK06 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_07G133800 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.28e-22
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 12 WEEECSTPTRWECRIPAVFNCPPPPKKKNGNDGKKREPPKHGYFQPPDLEALFSVPPRRE 71
          WE+EC TP   + +IPAVF CPPPP +K    GK+R PPK GYFQPPDL++LFSVP R+E
Sbjct: 3  WEDECRTPRLVQNQIPAVFICPPPPPRKKPVAGKRRPPPKEGYFQPPDLDSLFSVPARKE 62

Query: 72 AC 73
          AC
Sbjct: 63 AC 64

[Close]

BLAST of MELO3C009251.jh1 vs. TAIR 10
Match: AT5G02220.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 75.5 bits (184), Expect = 2.0e-14
Identity = 37/62 (59.68%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 13 EEECSTPTRWECRIPAVFNCPPPPKKKNGNDGKKREPPKHGYFQPPDLEALFSVPPRREA 72
          EE C+TP     RIP    CPPPP+KK     +KR+PP++GYFQPPDLE LF   PRREA
Sbjct: 12 EEGCTTPRSTMYRIPVASVCPPPPRKKL-MVVRKRDPPRNGYFQPPDLETLFYAQPRREA 71

Query: 73 CA 75
          CA
Sbjct: 72 CA 72

[Close]

BLAST of MELO3C009251.jh1 vs. TAIR 10
Match: AT5G40460.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 40.4 bits (93), Expect = 7.2e-04
Identity = 22/55 (40.00%), Postives = 30/55 (54.55%), Query Frame = 0


Query: 11  NWEEECS-TPTRWECRIPAVFNCPPPPKKKNGNDGKKREPPKHGYFQPPDLEALF 65
           N EEECS TPT  E +IP +  CPP P+K+      +    +  +  P DLE +F
Sbjct: 54  NEEEECSTTPTAKETKIPELLECPPAPRKRRPALKCRSNVVREFFTPPSDLETVF 108

The following BLAST results are available for this feature:

BLAST of MELO3C009251.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737830.1	4.84e-44	89.19	cyclin-dependent protein kinase inhibitor SMR4 [Cucumis sativus] >KAE8651008.1 h...	[more]
XP_038905412.1	1.14e-42	87.84	cyclin-dependent protein kinase inhibitor SMR4 [Benincasa hispida]	[more]
XP_023528630.1	2.34e-38	82.89	cyclin-dependent protein kinase inhibitor SMR4 [Cucurbita pepo subsp. pepo]	[more]
XP_022983341.1	3.32e-38	82.89	cyclin-dependent protein kinase inhibitor SMR4 [Cucurbita maxima]	[more]
KAG6580535.1	3.89e-37	81.58	Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma ...	[more]

BLAST of MELO3C009251.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1JPP8	2.9e-13	59.68	Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9LNX4	1.8e-12	54.69	Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of MELO3C009251.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAJ2	3.18e-43	89.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734160 PE=4 SV=1	[more]
A0A6J1J1Y0	1.61e-38	82.89	cyclin-dependent protein kinase inhibitor SMR4 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A7N2M7Y9	1.68e-23	67.74	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A540NAX5	1.18e-22	67.21	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_006159 PE=4 SV=1	[more]
I1KK06	1.28e-22	64.52	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_07G133800 PE=4 SV=1	[more]

BLAST of MELO3C009251.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02220.1	2.0e-14	59.68	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT5G40460.1	7.2e-04	40.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..60
None	No IPR available	PANTHER	PTHR33142:SF15	OS01G0843700 PROTEIN	coord: 5..72
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 5..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C009251.jh1.t1	MELO3C009251.jh1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032875	regulation of DNA endoreduplication