MELO3C009241.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C009241.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Descriptionlight-harvesting complex-like protein OHP1, chloroplastic
Locationchr04: 33278654 .. 33279450 (-)
RNA-Seq ExpressionMELO3C009241.jh1
SyntenyMELO3C009241.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTTCTGATAACGTTACCGAAGCAGTGGCTGTGGTTGTGTTTGGAGCATTTCCAAATAATGGCGTCTTCCTCTGTGATTTTATCTTCTCTTCCTCCGGCCAGAGCTCTGACTTTTAACCAACAAGACGGTCGCCACGGTCTCTTTCAAATTGGGTCTTCTGCCCGTGCCAATAACAGCAGGGCTCGTCCCTCCTTCAGGGTTCAGGCCGCCGCAAAGCCTCCGGCTGGAGTACGCTCTCTATCCTCTTCAAATTTGTGAACTTTTTTCCCATTACTGTTTCACCTGTTGAAAAAATGGTTTACATCTCAAAAGCTTGAATAAATCCAGAATAATACATTCATGCGGGCTTGTGAATTACCTATTCATTTCTGTTTTGAAGGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCTAGAGCCTGCATGATAGGCCTTATTGGGACTTTCGTAGTGGAGCTGGTGAGGTTTTCTTTTCTTCTTAATATGAAGAAAACTTTCTATCTTGTACCTTTTCTACCCATGTTTACGGGTTTTATCTGTCTGATTTTTCAGATATTGAACAAGAGTATACTTCAAGTGATTGGAGTTGATGTTGGGAAAGGCCTGGATCTTCCTCTTTGATTCCCGGAAAAGTTTTAAACATCTTGAGATCCTTCGTGTCTTTTTATTGAAAAAAGAAAAACAATGAAATTGTAACTGTACCAAAGGACTTTCAACTGTATCAGAGAATTCTACAATCTTCAAGTTCTTGTA

mRNA sequence

AGTTCTGATAACGTTACCGAAGCAGTGGCTGTGGTTGTGTTTGGAGCATTTCCAAATAATGGCGTCTTCCTCTGTGATTTTATCTTCTCTTCCTCCGGCCAGAGCTCTGACTTTTAACCAACAAGACGGTCGCCACGGTCTCTTTCAAATTGGGTCTTCTGCCCGTGCCAATAACAGCAGGGCTCGTCCCTCCTTCAGGGTTCAGGCCGCCGCAAAGCCTCCGGCTGGAGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCTAGAGCCTGCATGATAGGCCTTATTGGGACTTTCGTAGTGGAGCTGATATTGAACAAGAGTATACTTCAAGTGATTGGAGTTGATGTTGGGAAAGGCCTGGATCTTCCTCTTTGATTCCCGGAAAAGTTTTAAACATCTTGAGATCCTTCGTGTCTTTTTATTGAAAAAAGAAAAACAATGAAATTGTAACTGTACCAAAGGACTTTCAACTGTATCAGAGAATTCTACAATCTTCAAGTTCTTGTA

Coding sequence (CDS)

ATGGCGTCTTCCTCTGTGATTTTATCTTCTCTTCCTCCGGCCAGAGCTCTGACTTTTAACCAACAAGACGGTCGCCACGGTCTCTTTCAAATTGGGTCTTCTGCCCGTGCCAATAACAGCAGGGCTCGTCCCTCCTTCAGGGTTCAGGCCGCCGCAAAGCCTCCGGCTGGAGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCTAGAGCCTGCATGATAGGCCTTATTGGGACTTTCGTAGTGGAGCTGATATTGAACAAGAGTATACTTCAAGTGATTGGAGTTGATGTTGGGAAAGGCCTGGATCTTCCTCTTTGA

Protein sequence

MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSARANNSRARPSFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL
Homology
[Close]
BLAST of MELO3C009241.jh1 vs. NCBI nr
Match: XP_008442523.1 (PREDICTED: high-light-induced protein, chloroplastic [Cucumis melo] >KAA0044105.1 high-light-induced protein [Cucumis melo var. makuwa] >TYK25033.1 high-light-induced protein [Cucumis melo var. makuwa])

HSP 1 Score: 231 bits (588), Expect = 3.91e-76
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0 

Query: 1   MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSARANNSRARPSFRVQAAAKPPAGVEL 60
           MASSSVILSSLPPARALTFNQQDGRHGLFQIGSS RANNSRARPSFRVQAAAKPPAGVEL
Sbjct: 1   MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVEL 60

Query: 61  PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL 120
           PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL
Sbjct: 61  PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL 120

[Close]
BLAST of MELO3C009241.jh1 vs. NCBI nr
Match: XP_004137791.1 (light-harvesting complex-like protein OHP1, chloroplastic [Cucumis sativus] >KGN58853.1 hypothetical protein Csa_001588 [Cucumis sativus])

HSP 1 Score: 207 bits (527), Expect = 7.86e-67
Identity = 108/120 (90.00%), Postives = 111/120 (92.50%), Query Frame = 0 

Query: 1   MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSARANNSRARPSFRVQAAAKPPAGVEL 60
           MASSSVILSSLPPARALT N QD RH LFQIG S RAN+SRAR SFR+QAAAKPPAGVEL
Sbjct: 1   MASSSVILSSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVEL 60

Query: 61  PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL 120
           PKVEPKF+APFLGFTKTAEIWNSRACMIGLIG FVVELILNK ILQVIGVDVGKGLDLPL
Sbjct: 61  PKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120

[Close]
BLAST of MELO3C009241.jh1 vs. NCBI nr
Match: XP_038905156.1 (light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida])

HSP 1 Score: 180 bits (457), Expect = 3.57e-56
Identity = 103/121 (85.12%), Postives = 106/121 (87.60%), Query Frame = 0 

Query: 1   MASSSVILSS-LPPARALTFNQQDGRHGLFQIGSSARANNSRARPSFRVQAAAKPPAGVE 60
           MASSS ILSS L PARA   +QQDGR  LFQIGS  RANNSR+R  FRVQAA KPPAGVE
Sbjct: 1   MASSSAILSSSLLPARAPICSQQDGRLCLFQIGS-VRANNSRSRVPFRVQAA-KPPAGVE 60

Query: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLP 120
           LPKVEPKFEAPFLGFTKTAE+WNSRACMIGLIG FVVELILNK ILQVIGVDVGKGLDLP
Sbjct: 61  LPKVEPKFEAPFLGFTKTAEVWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLP 119

[Close]
BLAST of MELO3C009241.jh1 vs. NCBI nr
Match: XP_022145630.1 (light-harvesting complex-like protein OHP1, chloroplastic [Momordica charantia])

HSP 1 Score: 175 bits (444), Expect = 3.42e-54
Identity = 100/121 (82.64%), Postives = 106/121 (87.60%), Query Frame = 0 

Query: 1   MASSSVILSS-LPPARALTFNQQDGRHGLFQIGSSARANNSRARPSFRVQAAAKPPAGVE 60
           MASSS +LSS L PARA T N+QDGR  LFQIGS  RANNSRAR  FRVQAA K PAGVE
Sbjct: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGS-VRANNSRARVPFRVQAA-KLPAGVE 60

Query: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLP 120
           LPKVEPKFEAPFLGFTKTAEIWNSRACM+GL+G F+VELIL+K ILQVIGVDVGKGLDLP
Sbjct: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLP 119

[Close]
BLAST of MELO3C009241.jh1 vs. NCBI nr
Match: XP_022934608.1 (light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata] >XP_022983997.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita maxima] >KAG6580528.1 Light-harvesting complex-like protein OHP1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017279.1 Light-harvesting complex-like protein OHP1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172 bits (435), Expect = 8.05e-53
Identity = 98/121 (80.99%), Postives = 104/121 (85.95%), Query Frame = 0 

Query: 1   MASSSVILSS-LPPARALTFNQQDGRHGLFQIGSSARANNSRARPSFRVQAAAKPPAGVE 60
           MASS+ ILSS L PARA   ++QDGR  LFQ+GS  RANN RAR  FRVQAA KPPAGVE
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGS-VRANNRRARAPFRVQAA-KPPAGVE 60

Query: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLP 120
           LPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIG FVVELILNK ILQVIGVD+GKGLDLP
Sbjct: 61  LPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLP 119

[Close]
BLAST of MELO3C009241.jh1 vs. ExPASy Swiss-Prot
Match: O81208 (Light-harvesting complex-like protein OHP1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OHP1 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-23
Identity = 54/73 (73.97%), Postives = 63/73 (86.30%), Query Frame = 0 

Query: 48  VQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQV 107
           V  AAK P GV +PK +PK +  FLGFT+TAEIWNSRACMIGLIGTF+VELILNK IL++
Sbjct: 38  VVRAAKLPEGVIVPKAQPKSQPAFLGFTQTAEIWNSRACMIGLIGTFIVELILNKGILEL 97

Query: 108 IGVDVGKGLDLPL 121
           IGV++GKGLDLPL
Sbjct: 98  IGVEIGKGLDLPL 110

[Close]
BLAST of MELO3C009241.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TRS8 (High-light-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001530 PE=4 SV=1)

HSP 1 Score: 231 bits (588), Expect = 1.89e-76
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0 

Query: 1   MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSARANNSRARPSFRVQAAAKPPAGVEL 60
           MASSSVILSSLPPARALTFNQQDGRHGLFQIGSS RANNSRARPSFRVQAAAKPPAGVEL
Sbjct: 1   MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVEL 60

Query: 61  PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL 120
           PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL
Sbjct: 61  PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL 120

[Close]
BLAST of MELO3C009241.jh1 vs. ExPASy TrEMBL
Match: A0A1S3B5V9 (high-light-induced protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486373 PE=4 SV=1)

HSP 1 Score: 231 bits (588), Expect = 1.89e-76
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0 

Query: 1   MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSARANNSRARPSFRVQAAAKPPAGVEL 60
           MASSSVILSSLPPARALTFNQQDGRHGLFQIGSS RANNSRARPSFRVQAAAKPPAGVEL
Sbjct: 1   MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVEL 60

Query: 61  PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL 120
           PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL
Sbjct: 61  PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL 120

[Close]
BLAST of MELO3C009241.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LAI0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734070 PE=4 SV=1)

HSP 1 Score: 207 bits (527), Expect = 3.81e-67
Identity = 108/120 (90.00%), Postives = 111/120 (92.50%), Query Frame = 0 

Query: 1   MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSARANNSRARPSFRVQAAAKPPAGVEL 60
           MASSSVILSSLPPARALT N QD RH LFQIG S RAN+SRAR SFR+QAAAKPPAGVEL
Sbjct: 1   MASSSVILSSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVEL 60

Query: 61  PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL 120
           PKVEPKF+APFLGFTKTAEIWNSRACMIGLIG FVVELILNK ILQVIGVDVGKGLDLPL
Sbjct: 61  PKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120

[Close]
BLAST of MELO3C009241.jh1 vs. ExPASy TrEMBL
Match: A0A6J1CV10 (light-harvesting complex-like protein OHP1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015030 PE=4 SV=1)

HSP 1 Score: 175 bits (444), Expect = 1.66e-54
Identity = 100/121 (82.64%), Postives = 106/121 (87.60%), Query Frame = 0 

Query: 1   MASSSVILSS-LPPARALTFNQQDGRHGLFQIGSSARANNSRARPSFRVQAAAKPPAGVE 60
           MASSS +LSS L PARA T N+QDGR  LFQIGS  RANNSRAR  FRVQAA K PAGVE
Sbjct: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGS-VRANNSRARVPFRVQAA-KLPAGVE 60

Query: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLP 120
           LPKVEPKFEAPFLGFTKTAEIWNSRACM+GL+G F+VELIL+K ILQVIGVDVGKGLDLP
Sbjct: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLP 119

[Close]
BLAST of MELO3C009241.jh1 vs. ExPASy TrEMBL
Match: A0A6J1J0W8 (light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482448 PE=4 SV=1)

HSP 1 Score: 172 bits (435), Expect = 3.90e-53
Identity = 98/121 (80.99%), Postives = 104/121 (85.95%), Query Frame = 0 

Query: 1   MASSSVILSS-LPPARALTFNQQDGRHGLFQIGSSARANNSRARPSFRVQAAAKPPAGVE 60
           MASS+ ILSS L PARA   ++QDGR  LFQ+GS  RANN RAR  FRVQAA KPPAGVE
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGS-VRANNRRARAPFRVQAA-KPPAGVE 60

Query: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLP 120
           LPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIG FVVELILNK ILQVIGVD+GKGLDLP
Sbjct: 61  LPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLP 119

[Close]
BLAST of MELO3C009241.jh1 vs. TAIR 10
Match: AT5G02120.1 (one helix protein )

HSP 1 Score: 110.5 bits (275), Expect = 9.2e-25
Identity = 54/73 (73.97%), Postives = 63/73 (86.30%), Query Frame = 0 

Query: 48  VQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQV 107
           V  AAK P GV +PK +PK +  FLGFT+TAEIWNSRACMIGLIGTF+VELILNK IL++
Sbjct: 38  VVRAAKLPEGVIVPKAQPKSQPAFLGFTQTAEIWNSRACMIGLIGTFIVELILNKGILEL 97

Query: 108 IGVDVGKGLDLPL 121
           IGV++GKGLDLPL
Sbjct: 98  IGVEIGKGLDLPL 110

The following BLAST results are available for this feature:
BLAST of MELO3C009241.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008442523.13.91e-7699.17PREDICTED: high-light-induced protein, chloroplastic [Cucumis melo] >KAA0044105.... [more]
XP_004137791.17.86e-6790.00light-harvesting complex-like protein OHP1, chloroplastic [Cucumis sativus] >KGN... [more]
XP_038905156.13.57e-5685.12light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida][more]
XP_022145630.13.42e-5482.64light-harvesting complex-like protein OHP1, chloroplastic [Momordica charantia][more]
XP_022934608.18.05e-5380.99light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata] >... [more]
BLAST of MELO3C009241.jh1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O812081.3e-2373.97Light-harvesting complex-like protein OHP1, chloroplastic OS=Arabidopsis thalian... [more]
BLAST of MELO3C009241.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TRS81.89e-7699.17High-light-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A1S3B5V91.89e-7699.17high-light-induced protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10348637... [more]
A0A0A0LAI03.81e-6790.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734070 PE=4 SV=1[more]
A0A6J1CV101.66e-5482.64light-harvesting complex-like protein OHP1, chloroplastic OS=Momordica charantia... [more]
A0A6J1J0W83.90e-5380.99light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita maxima OX... [more]
BLAST of MELO3C009241.jh1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G02120.19.2e-2573.97one helix protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR14154UPF0041 BRAIN PROTEIN 44-RELATEDcoord: 1..117
NoneNo IPR availablePANTHERPTHR14154:SF51LIGHT-HARVESTING COMPLEX-LIKE PROTEIN OHP1, CHLOROPLASTICcoord: 1..117
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 64..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C009241.jh1.t1MELO3C009241.jh1.t1mRNA