MELO3C009106 (gene) Melon (DHL92) v4

Overview
NameMELO3C009106
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Description50S ribosomal protein L35
Locationchr04: 32935134 .. 32935943 (+)
RNA-Seq ExpressionMELO3C009106
SyntenyMELO3C009106
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATAGGTCATCGGCGGTCATTCAAAATCAGCGTTCATGCCAAGATCTGTAACCTTTATATCAAGCTGAAGGCCACTCTGAAACTTCCTTCCGGGAAATTCCAACGCCTCCTAAAGCTTGATAAACTACTCATCGAAGTGGATTCCAAATCCGAATCTCGGGTCCTCGTTCAACGGCGACGGACTTTGAAATCTCGAATGCTCAGCTTCGTCAAGAAGCATTTGGGGCGTTGCCGATCTAAAATCCCACATTCTGAATCTAAATATCAATCTTGGCATGTTGGCCATCAGGTACGGAATCAATCATGGGACGAGGAGTTTTCATTCAATTTATAGGTTTTTTTATTTATTTTTGTGTGTAAAAAAAAATTATTGATGATTGTAGATTGGTGTGGGATTTGGTTATCTGGTTGCACTCAAGACACAAATTGGGCTTGCAAATGCGGTTGGTTCCAGCTTCAGCTCCATTATATGGGTTTACCTGTGTGTATTTGTTATATGGCTCCAGAAATGTAAGTACCTTTGGGCAGTGCTATTGCTAGTTCCTCTGTTTCCTCTCTTACTCTTCCAATTGGATACATTTGTACATCTTTTACATTTACGCCACTTTTTCTAAAATATTTCTTTTTCTTCCTTATTCTATTTTTCTCTTTTATCCAAATTCATCTCCCTATTTTTTTTAATTTATTATATTATCTAAACCAACCATTTACATGAAAACTATTTTCGAAACAAATTATTTATAGTTTTTTTTTTTTTTTTTAACGTTTTCCAACAAATTCTTGCATTGAAGGTGATCCAATCTCG

mRNA sequence

ATGGCGATAGGTCATCGGCGGTCATTCAAAATCAGCGTTCATGCCAAGATCTGTAACCTTTATATCAAGCTGAAGGCCACTCTGAAACTTCCTTCCGGGAAATTCCAACGCCTCCTAAAGCTTGATAAACTACTCATCGAAGTGGATTCCAAATCCGAATCTCGGGTCCTCGTTCAACGGCGACGGACTTTGAAATCTCGAATGCTCAGCTTCGTCAAGAAGCATTTGGGGCGTTGCCGATCTAAAATCCCACATTCTGAATCTAAATATCAATCTTGGCATGTTGGCCATCAGATTGGTGTGGGATTTGGTTATCTGGTTGCACTCAAGACACAAATTGGGCTTGCAAATGCGGTTGGTTCCAGCTTCAGCTCCATTATATGGGTTTACCTGTGTGTATTTGTTATATGGCTCCAGAAATGTAAGTACCTTTGGGCAGTGCTATTGCTAGTTCCTCTGTTTCCTCTCTTACTCTTCCAATTGGATACATTTGTACATCTTTTACATTTACGCCACTTTTTCTAAAATATTTCTTTTTCTTCCTTATTCTATTTTTCTCTTTTATCCAAATTCATCTCCCTATTTTTTTTAATTTATTATATTATCTAAACCAACCATTTACATGAAAACTATTTTCGAAACAAATTATTTATAGTTTTTTTTTTTTTTTTTAACGTTTTCCAACAAATTCTTGCATTGAAGGTGATCCAATCTCG

Coding sequence (CDS)

ATGGCGATAGGTCATCGGCGGTCATTCAAAATCAGCGTTCATGCCAAGATCTGTAACCTTTATATCAAGCTGAAGGCCACTCTGAAACTTCCTTCCGGGAAATTCCAACGCCTCCTAAAGCTTGATAAACTACTCATCGAAGTGGATTCCAAATCCGAATCTCGGGTCCTCGTTCAACGGCGACGGACTTTGAAATCTCGAATGCTCAGCTTCGTCAAGAAGCATTTGGGGCGTTGCCGATCTAAAATCCCACATTCTGAATCTAAATATCAATCTTGGCATGTTGGCCATCAGATTGGTGTGGGATTTGGTTATCTGGTTGCACTCAAGACACAAATTGGGCTTGCAAATGCGGTTGGTTCCAGCTTCAGCTCCATTATATGGGTTTACCTGTGTGTATTTGTTATATGGCTCCAGAAATGTAAGTACCTTTGGGCAGTGCTATTGCTAGTTCCTCTGTTTCCTCTCTTACTCTTCCAATTGGATACATTTGTACATCTTTTACATTTACGCCACTTTTTCTAA

Protein sequence

MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQRRRTLKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQIGVGFGYLVALKTQIGLANAVGSSFSSIIWVYLCVFVIWLQKCKYLWAVLLLVPLFPLLLFQLDTFVHLLHLRHFF
Homology
[Close]
BLAST of MELO3C009106 vs. NCBI nr
Match: XP_008442323.1 (PREDICTED: uncharacterized protein LOC103486229 [Cucumis melo])

HSP 1 Score: 334.7 bits (857), Expect = 4.7e-88
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0 

Query: 1   MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 60
           MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR
Sbjct: 1   MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 60

Query: 61  RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQIGVGFGYLVALKTQIGLANAVG 120
           RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQIGVGFGYLVALKTQIGLANAVG
Sbjct: 61  RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQIGVGFGYLVALKTQIGLANAVG 120

Query: 121 SSFSSIIWVYLCVFVIWLQKCKYLWAVLLLVPLFPLLLFQLDTFVHLLHLRHFF 175
           SSFSSIIWVYLCVFVIWLQKCKYLWAVLLLVPLFPLLLFQLDTFVHLLHLRHFF
Sbjct: 121 SSFSSIIWVYLCVFVIWLQKCKYLWAVLLLVPLFPLLLFQLDTFVHLLHLRHFF 174

[Close]
BLAST of MELO3C009106 vs. NCBI nr
Match: KAE8650972.1 (hypothetical protein Csa_002588 [Cucumis sativus])

HSP 1 Score: 280.4 bits (716), Expect = 1.0e-71
Identity = 151/181 (83.43%), Postives = 161/181 (88.95%), Query Frame = 0 

Query: 1   MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 60
           MAIGHRRSFKISV AKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKS SR+L+QR
Sbjct: 3   MAIGHRRSFKISVQAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSRILLQR 62

Query: 61  RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVG-------HQIGVGFGY-LVALKTQ 120
           RRTLKSRMLSFVKKHLG  RSK PH+ES+Y+SWHVG          GVG GY +VALKTQ
Sbjct: 63  RRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLERRCVAAFGVGLGYVVVALKTQ 122

Query: 121 IGLANAVGSSFSSIIWVYLCVFVIWLQKCKYLWAVLLLVPLFPLLLFQLDTFVHLLHLRH 174
           I LANA+G SFSSIIWVYLCVFV+WLQKCKYLWA+LLL+PLFPLLLFQLDTFVHLLHLR 
Sbjct: 123 IELANAIGPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHLRQ 182

[Close]
BLAST of MELO3C009106 vs. NCBI nr
Match: XP_038906422.1 (uncharacterized protein LOC120092221 [Benincasa hispida])

HSP 1 Score: 235.7 bits (600), Expect = 3.0e-58
Identity = 133/184 (72.28%), Postives = 145/184 (78.80%), Query Frame = 0 

Query: 1   MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 60
           MA+G RRSFKI+VHAKICNLYIKLKATLK PSGK QRLLKLDKLLI  DSKSES +LVQR
Sbjct: 42  MALGFRRSFKITVHAKICNLYIKLKATLKPPSGKLQRLLKLDKLLIGADSKSESWILVQR 101

Query: 61  RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQ-------IGVGFGYLVALKTQI 120
           RRTLKSRMLSFVKKHLG  RSK+PH+ES+ QSW VG          GVG GYL+AL T I
Sbjct: 102 RRTLKSRMLSFVKKHLGCGRSKMPHAESENQSWDVGRMELRCVAFFGVGLGYLLALNTHI 161

Query: 121 GLANAVGSSFSSIIWVYLC--VFVIWLQKCK--YLWAVLLLVPLFPLLLFQLDTFVHLLH 174
           GL NA+  SFSS IWV LC  +FV+WL KCK  YLWA+L L+ L PL L QLD FVHLLH
Sbjct: 162 GLTNAIHPSFSSTIWVCLCLLLFVLWLHKCKYLYLWAILFLIALLPLFLLQLDKFVHLLH 221

[Close]
BLAST of MELO3C009106 vs. NCBI nr
Match: KAA0044224.1 (RING-H2 finger protein ATL74-like [Cucumis melo var. makuwa])

HSP 1 Score: 229.6 bits (584), Expect = 2.1e-56
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0 

Query: 1   MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 60
           MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR
Sbjct: 170 MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 229

Query: 61  RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQIGVGFGYLVALKTQIGLANAV 120
           RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQ WHVGHQIGVGFGYLVALKTQIGLANAV
Sbjct: 230 RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQYWHVGHQIGVGFGYLVALKTQIGLANAV 288

[Close]
BLAST of MELO3C009106 vs. NCBI nr
Match: TYK24910.1 (50S ribosomal protein L35 [Cucumis melo var. makuwa])

HSP 1 Score: 225.7 bits (574), Expect = 3.1e-55
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 4   GHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQRRRT 63
           GHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQRRRT
Sbjct: 7   GHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQRRRT 66

Query: 64  LKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQIGVGFGYLVALKTQIGLANA 119
           LKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQIGVGFGYLVALKTQIGLANA
Sbjct: 67  LKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQIGVGFGYLVALKTQIGLANA 121

[Close]
BLAST of MELO3C009106 vs. ExPASy TrEMBL
Match: A0A1S3B4Y8 (uncharacterized protein LOC103486229 OS=Cucumis melo OX=3656 GN=LOC103486229 PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.3e-88
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0 

Query: 1   MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 60
           MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR
Sbjct: 1   MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 60

Query: 61  RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQIGVGFGYLVALKTQIGLANAVG 120
           RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQIGVGFGYLVALKTQIGLANAVG
Sbjct: 61  RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQIGVGFGYLVALKTQIGLANAVG 120

Query: 121 SSFSSIIWVYLCVFVIWLQKCKYLWAVLLLVPLFPLLLFQLDTFVHLLHLRHFF 175
           SSFSSIIWVYLCVFVIWLQKCKYLWAVLLLVPLFPLLLFQLDTFVHLLHLRHFF
Sbjct: 121 SSFSSIIWVYLCVFVIWLQKCKYLWAVLLLVPLFPLLLFQLDTFVHLLHLRHFF 174

[Close]
BLAST of MELO3C009106 vs. ExPASy TrEMBL
Match: A0A5A7TM08 (RING-H2 finger protein ATL74-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G005850 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 1.0e-56
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0 

Query: 1   MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 60
           MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR
Sbjct: 170 MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 229

Query: 61  RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQIGVGFGYLVALKTQIGLANAV 120
           RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQ WHVGHQIGVGFGYLVALKTQIGLANAV
Sbjct: 230 RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQYWHVGHQIGVGFGYLVALKTQIGLANAV 288

[Close]
BLAST of MELO3C009106 vs. ExPASy TrEMBL
Match: A0A5D3DNQ2 (50S ribosomal protein L35 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00230 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.5e-55
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 4   GHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQRRRT 63
           GHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQRRRT
Sbjct: 7   GHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQRRRT 66

Query: 64  LKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQIGVGFGYLVALKTQIGLANA 119
           LKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQIGVGFGYLVALKTQIGLANA
Sbjct: 67  LKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQIGVGFGYLVALKTQIGLANA 121

[Close]
BLAST of MELO3C009106 vs. ExPASy TrEMBL
Match: A0A0A0LCL9 (50S ribosomal protein L35 OS=Cucumis sativus OX=3659 GN=Csa_3G728110 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 6.4e-51
Identity = 114/140 (81.43%), Postives = 121/140 (86.43%), Query Frame = 0 

Query: 1   MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 60
           MAIGHRRSFKISV AKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKS SR+L+QR
Sbjct: 1   MAIGHRRSFKISVQAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSRILLQR 60

Query: 61  RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVG-------HQIGVGFGY-LVALKTQ 120
           RRTLKSRMLSFVKKHLG  RSK PH+ES+Y+SWHVG          GVG GY +VALKTQ
Sbjct: 61  RRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLERRCVAAFGVGLGYVVVALKTQ 120

Query: 121 IGLANAVGSSFSSIIWVYLC 133
           I LANA+G SFSSIIWVYLC
Sbjct: 121 IELANAIGPSFSSIIWVYLC 140

The following BLAST results are available for this feature:
BLAST of MELO3C009106 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008442323.14.7e-88100.00PREDICTED: uncharacterized protein LOC103486229 [Cucumis melo][more]
KAE8650972.11.0e-7183.43hypothetical protein Csa_002588 [Cucumis sativus][more]
XP_038906422.13.0e-5872.28uncharacterized protein LOC120092221 [Benincasa hispida][more]
KAA0044224.12.1e-5699.16RING-H2 finger protein ATL74-like [Cucumis melo var. makuwa][more]
TYK24910.13.1e-55100.0050S ribosomal protein L35 [Cucumis melo var. makuwa][more]
BLAST of MELO3C009106 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C009106 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3B4Y82.3e-88100.00uncharacterized protein LOC103486229 OS=Cucumis melo OX=3656 GN=LOC103486229 PE=... [more]
A0A5A7TM081.0e-5699.16RING-H2 finger protein ATL74-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3DNQ21.5e-55100.0050S ribosomal protein L35 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A0A0LCL96.4e-5181.4350S ribosomal protein L35 OS=Cucumis sativus OX=3659 GN=Csa_3G728110 PE=4 SV=1[more]
BLAST of MELO3C009106 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C009106.1MELO3C009106.1mRNA