MELO3C009049 (gene) Melon (DHL92) v4

Overview
NameMELO3C009049
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionDNA/RNA polymerases superfamily protein
Locationchr07: 11058898 .. 11059407 (-)
RNA-Seq ExpressionMELO3C009049
SyntenyMELO3C009049
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGTCGAAGGTTTTGAGGAAATCTCATTTACCTCCAAGCTTGAATTTCTTCTTTCTTCGAACTCCATCCCAAGCACGCAAAGGAGCCCTTATAAGTTGTTTGAAAGGTTTTTCAATCATCTTGATTATAGGCCAATATCAACTCATCGAAACATGCAAAACAACGTTAGATTCTGGGAAGTCTCCTCTTCAACCTCCGGCTATTGGTAGCTCTATTAGTAAATAGATGGCAGAAGACAAACGAAAGTTAGAGAATTCCAAAAGATGTTTAGAATCAGAACCACCAATCAAGAAGGCTTAGTTTTTCTGCCAATGGAGACTTCTTTTGATTGTATTCCATTTGAAAAGTCACTTGAAGGAGTCCAGTAGTCACATATTTGCAACATTAAAGATATTAACTATGTTGTTTTCGAGAACAAAAGAGCCAATAAGACATTAGTCACTATAAAGGCCAATAATAAAATTCAGATGGGAGTTGCATTTAAATTGTCAGAAAACGAAGAGATG

mRNA sequence

ATGAAGGTCGAAGGTTTTGAGGAAATCTCATTTACCTCCAAGCTTGAATTTCTTCTTTCTTCGAACTCCATCCCAAGCACGCAAAGGAGCCCTTATAAGTTGTTTGAAAGGTTTTTCAATCATCTTGATTATAGGCCAATATCAACTCATCGAAACATGCAAAACAACGTTAGATTCTGGGAAGTCTCCTCTTCAACCTCCGGCTATTGGTAGCTCTATTAGTAAATAGATGGCAGAAGACAAACGAAAGTTAGAGAATTCCAAAAGATGTTTAGAATCAGAACCACCAATCAAGAAGGCTTAGTTTTTCTGCCAATGGAGACTTCTTTTGATTGTATTCCATTTGAAAAGTCACTTGAAGGAGTCCAGTAGTCACATATTTGCAACATTAAAGATATTAACTATGTTGTTTTCGAGAACAAAAGAGCCAATAAGACATTAGTCACTATAAAGGCCAATAATAAAATTCAGATGGGAGTTGCATTTAAATTGTCAGAAAACGAAGAGATG

Coding sequence (CDS)

ATGAAGGTCGAAGGTTTTGAGGAAATCTCATTTACCTCCAAGCTTGAATTTCTTCTTTCTTCGAACTCCATCCCAAGCACGCAAAGGAGCCCTTATAAGTTGTTTGAAAGGTTTTTCAATCATCTTGATTATAGGCCAATATCAACTCATCGAAACATGCAAAACAACGTTAGATTCTGGGAAGTCTCCTCTTCAACCTCCGGCTATTGGTAG

Protein sequence

MKVEGFEEISFTSKLEFLLSSNSIPSTQRSPYKLFERFFNHLDYRPISTHRNMQNNVRFWEVSSSTSGYW
Homology
[Close]
BLAST of MELO3C009049 vs. NCBI nr
Match: KAE8646831.1 (hypothetical protein Csa_018324 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 0 

Query: 1   MKVEGFEEISFTSKLEFLLSSNSIPSTQRSPYKLFERFFNHLDYRPISTHRNMQNNVRFW 60
           MK +GF E SF+SK ++LL SNSIPSTQR+PY+L ER F HL  RPIS    +Q+ V FW
Sbjct: 82  MKDKGFGEGSFSSKFDYLLPSNSIPSTQRNPYELSERLFKHLHQRPISP--KLQSIVGFW 141

Query: 61  EVSSSTSG 69
           E   STSG
Sbjct: 142 EFFPSTSG 147

[Close]
BLAST of MELO3C009049 vs. NCBI nr
Match: KAE8649297.1 (hypothetical protein Csa_015271, partial [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 7.3e-08
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 0 

Query: 1   MKVEGFEEISFTSKLEFLLSSNSIPSTQRSPYKLFERFFNHLDYRPISTHR 52
           MK EGFEE+S +S  E +L +NSIPSTQR+P+KL ER  NHL  R  STHR
Sbjct: 108 MKNEGFEEVSISSNFELILPANSIPSTQRNPHKLSERLLNHLHQRSTSTHR 158

[Close]
BLAST of MELO3C009049 vs. NCBI nr
Match: KAE8653570.1 (hypothetical protein Csa_007659, partial [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-07
Identity = 32/50 (64.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 1  MKVEGFEEISFTSKLEFLLSSNSIPSTQRSPYKLFERFFNHLDYRPISTH 51
          MK EGFEE+SF+S  E LL +NSIP TQR+P+KL ER  NHL  R  STH
Sbjct: 9  MKDEGFEEVSFSSNFELLLPANSIPRTQRNPHKLSERLLNHLHQRSTSTH 58

[Close]
BLAST of MELO3C009049 vs. NCBI nr
Match: KAE8649313.1 (hypothetical protein Csa_014975, partial [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 8.1e-07
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 0 

Query: 1  MKVEGFEEISFTSKLEFLLSSNSIPSTQRSPYKLFERFFNHLDYRPISTHRN 53
          MK EGFEE SF+SK ++LL SNSIPSTQR+PY+  ER F  L  +PI + RN
Sbjct: 9  MKDEGFEEDSFSSKFDYLLPSNSIPSTQRNPYESSERLFKLLQQKPIPSLRN 60

[Close]
BLAST of MELO3C009049 vs. NCBI nr
Match: TYK16775.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 4.9e-04
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 0 

Query: 1   MKVEGFEEISFTSKLEFLLSSNSIPSTQRSPYKLFERFFNHLDYRPISTHRN 53
           MK EG  ++    K ++LL SNSIPS QR+PY+L ER F HL  RP    RN
Sbjct: 276 MKDEGLRKVHLAPKFDYLLPSNSIPSMQRNPYELSERLFKHLRQRPRPFLRN 327

[Close]
BLAST of MELO3C009049 vs. ExPASy TrEMBL
Match: A0A5A7SLN9 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G00330 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-04
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 0 

Query: 1   MKVEGFEEISFTSKLEFLLSSNSIPSTQRSPYKLFERFFNHLDYRPISTHRN 53
           MK EG  ++    K ++LL SNSIPS QR+PY+L ER F HL  RP    RN
Sbjct: 261 MKDEGLRKVHLAPKFDYLLPSNSIPSMQRNPYELSERLFKHLRQRPRPFLRN 312

[Close]
BLAST of MELO3C009049 vs. ExPASy TrEMBL
Match: A0A5D3CZ35 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00310 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-04
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 0 

Query: 1   MKVEGFEEISFTSKLEFLLSSNSIPSTQRSPYKLFERFFNHLDYRPISTHRN 53
           MK EG  ++    K ++LL SNSIPS QR+PY+L ER F HL  RP    RN
Sbjct: 276 MKDEGLRKVHLAPKFDYLLPSNSIPSMQRNPYELSERLFKHLRQRPRPFLRN 327

The following BLAST results are available for this feature:
BLAST of MELO3C009049 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8646831.11.2e-1060.29hypothetical protein Csa_018324 [Cucumis sativus][more]
KAE8649297.17.3e-0862.75hypothetical protein Csa_015271, partial [Cucumis sativus][more]
KAE8653570.11.2e-0764.00hypothetical protein Csa_007659, partial [Cucumis sativus][more]
KAE8649313.18.1e-0761.54hypothetical protein Csa_014975, partial [Cucumis sativus][more]
TYK16775.14.9e-0451.92DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C009049 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C009049 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SLN92.4e-0451.92Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A5D3CZ352.4e-0451.92DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
BLAST of MELO3C009049 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C009049.1MELO3C009049.1mRNA