MELO3C009040 (gene) Melon (DHL92) v4

Overview


Name	MELO3C009040
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr08: 19144524 .. 19145416 (-)
RNA-Seq Expression	MELO3C009040
Synteny	MELO3C009040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTTAAGTGCATCATTGCAGCAAAGGACGTCTTCGATAGTTGGGCCAGAGTAAGAAATTTTATGAATTTTGTGTTTACATCGATCTAGTCAAATTGTGATTATGTTGTTTTAATTTTTCTTCATTTGTTTTTTTTTTTTTTTTTTGCAGACGCATCTTGCATGCAAAGGCCTGCTTAACAAGCCCTTCCCCCATTACGATGAGTTGTCGTATGTCTTTGAGAAAGACCGCACCACGGGGGCCAGTGTAGAGATGTTCACTGATATAGGGTCGAATGTGCCAGGCGAAAGTGATGGAGTTCAAGCAGAAGATGGGTTGGATATGGAGTTCCCTACTATGTGCAGCCTGAGAATGAATGTGTCACTCGAGGACAGGATGGGTGCACGACCTAGTATGTCCACTGTCGATAGGATGGGTTCGAGTGGATCAAAGAGGAAGCGCAGAGGGCAGTTTGAGACTGTGGATGTTTTTCGCGATGCCATGCACATTTCCAATGACCAGCTCAGGGACATCGCATAATGGATGATGATAGCTAGAGAGGAGGAAGACTCTGTGCGGCGGGCCATCATTTACACATTTGCAGGTTATCCCTTAACTCAATGTGGAGGACAGTGCACGCTGTATGATGGTCATAACTAAGAACTCCCTATCATGAAAGCTAGCCTTCTTGGACCTACCGGATGCGATGAAGCTCGCCTTTGCAACGTCAATTGGCACGATAACTCCTAATTGGTCTACCACATCCACCGCATGACCCGTAGTTGTTTTGGCCTTCTGAACACTCTTTACTCTGAATTACTTTTTATGATCGCATTGACTTCACGTTTACCGTTATTTATAAGAATGACTTTTATTTTGTAACTCATGTTCTTTCAATGAATTTATGTTTG

mRNA sequence

ATGAGCTTAAGTGCATCATTGCAGCAAAGGACGTCTTCGATAACGCATCTTGCATGCAAAGGCCTGCTTAACAAGCCCTTCCCCCATTACGATGAGTTGTCGTATGTCTTTGAGAAAGACCGCACCACGGGGGCCAGTGTAGAGATGTTCACTGATATAGGGTCGAATGTGCCAGGCGAAAGTGATGGAGTTCAAGCAGAAGATGGGTTGGATATGGAGTTCCCTACTATGTGCAGCCTGAGAATGAATGTGTCACTCGAGGACAGGATGGGTGCACGACCTAGTATGTCCACTGTCGATAGGATGGGTTCGAGTGGATCAAAGAGGAAGCGCAGAGGGCAGTTTGAGACTGTGGATGTTTTTCGCGATGCCATGCACATTTCCAATGACCAGCTCAGGGACATCGCATAATGGATGATGATAGCTAGAGAGGAGGAAGACTCTGTGCGGCGGGCCATCATTTACACATTTGCAGGTTATCCCTTAACTCAATGTGGAGGACAGTGCACGCTGTATGATGGTCATAACTAAGAACTCCCTATCATGAAAGCTAGCCTTCTTGGACCTACCGGATGCGATGAAGCTCGCCTTTGCAACGTCAATTGGCACGATAACTCCTAATTGGTCTACCACATCCACCGCATGACCCGTAGTTGTTTTGGCCTTCTGAACACTCTTTACTCTGAATTACTTTTTATGATCGCATTGACTTCACGTTTACCGTTATTTATAAGAATGACTTTTATTTTGTAACTCATGTTCTTTCAATGAATTTATGTTTG

Coding sequence (CDS)

ATGAGCTTAAGTGCATCATTGCAGCAAAGGACGTCTTCGATAACGCATCTTGCATGCAAAGGCCTGCTTAACAAGCCCTTCCCCCATTACGATGAGTTGTCGTATGTCTTTGAGAAAGACCGCACCACGGGGGCCAGTGTAGAGATGTTCACTGATATAGGGTCGAATGTGCCAGGCGAAAGTGATGGAGTTCAAGCAGAAGATGGGTTGGATATGGAGTTCCCTACTATGTGCAGCCTGAGAATGAATGTGTCACTCGAGGACAGGATGGGTGCACGACCTAGTATGTCCACTGTCGATAGGATGGGTTCGAGTGGATCAAAGAGGAAGCGCAGAGGGCAGTTTGAGACTGTGGATGTTTTTCGCGATGCCATGCACATTTCCAATGACCAGCTCAGGGACATCGCATAA

Protein sequence

MSLSASLQQRTSSITHLACKGLLNKPFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTMCSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQFETVDVFRDAMHISNDQLRDIA

Homology

[Close]

BLAST of MELO3C009040 vs. NCBI nr
Match: TYK29878.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 248.8 bits (634), Expect = 2.6e-62
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 15  THLACKGLLNKPFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEF 74
           THLACKGLLNKPFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEF
Sbjct: 190 THLACKGLLNKPFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEF 249

Query: 75  PTMCSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQFETVDVFRDAMHISNDQLRD 134
           PTMCSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQFETVDVFRDAMHISNDQLRD
Sbjct: 250 PTMCSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQFETVDVFRDAMHISNDQLRD 309

Query: 135 IA 137
           IA
Sbjct: 310 IA 311

[Close]

BLAST of MELO3C009040 vs. NCBI nr
Match: KAA0060069.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 235.3 bits (599), Expect = 3.0e-58
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 21  GLLNKPFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTMCSL 80
           GLLNKPFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTMCSL
Sbjct: 134 GLLNKPFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTMCSL 193

Query: 81  RMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQFETVDVFRDAMHISNDQLRDIA 137
           RMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQFETVDVFRDAMHISNDQLRDIA
Sbjct: 194 RMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQFETVDVFRDAMHISNDQLRDIA 249

[Close]

BLAST of MELO3C009040 vs. NCBI nr
Match: KAA0048148.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 6.1e-27
Identity = 70/122 (57.38%), Postives = 80/122 (65.57%), Query Frame = 0


Query: 16  HLACKGLLNKPFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFP 75
           H A K LLNKPF HYD LSYVFEKD+ TGA  E F DI SN+    D V  +DG+DMEFP
Sbjct: 2   HPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNMSAGYDSVPTKDGIDMEFP 61

Query: 76  TMCSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKR-RGQFETVDVFRDAMHISNDQLRD 135
            MCS RMN+S +D MG R   S+  R GSS  KRK    QFET D+ R+ M  + DQLR 
Sbjct: 62  VMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATDQLRT 121

Query: 136 IA 137
           IA
Sbjct: 122 IA 123

[Close]

BLAST of MELO3C009040 vs. NCBI nr
Match: TYK22883.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 2.3e-26
Identity = 71/106 (66.98%), Postives = 78/106 (73.58%), Query Frame = 0


Query: 16  HLACKGLLNKPFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFP 75
           H A KGLLNK FPHYDELSYVF K   TGAS E F DI SNVPGES+GV+ EDGL MEF 
Sbjct: 47  HPAAKGLLNKFFPHYDELSYVFRKVCMTGASTETFADIESNVPGESEGVETEDGLSMEFL 106

Query: 76  TMCSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKR-RGQFETVDV 121
           TMCS RMN+SLED M  +P  ST  R+G + SKRKR R   ETV+V
Sbjct: 107 TMCSPRMNMSLEDVMVTQPGRSTNCRLGFNESKRKRGRQTIETVEV 152

[Close]

BLAST of MELO3C009040 vs. NCBI nr
Match: KAA0042491.1 (RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 2.3e-26
Identity = 71/106 (66.98%), Postives = 78/106 (73.58%), Query Frame = 0


Query: 16  HLACKGLLNKPFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFP 75
           H A KGLLNK FPHYDELSYVF K   TGAS E F DI SNVPGES+GV+ EDGL MEF 
Sbjct: 609 HPAAKGLLNKFFPHYDELSYVFRKVCMTGASTETFADIESNVPGESEGVETEDGLSMEFL 668

Query: 76  TMCSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKR-RGQFETVDV 121
           TMCS RMN+SLED M  +P  ST  R+G + SKRKR R   ETV+V
Sbjct: 669 TMCSPRMNMSLEDVMVTQPGRSTNCRLGFNESKRKRGRQTIETVEV 714

[Close]

BLAST of MELO3C009040 vs. ExPASy TrEMBL
Match: A0A5D3E267 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001310 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.3e-62
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 15  THLACKGLLNKPFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEF 74
           THLACKGLLNKPFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEF
Sbjct: 190 THLACKGLLNKPFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEF 249

Query: 75  PTMCSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQFETVDVFRDAMHISNDQLRD 134
           PTMCSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQFETVDVFRDAMHISNDQLRD
Sbjct: 250 PTMCSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQFETVDVFRDAMHISNDQLRD 309

Query: 135 IA 137
           IA
Sbjct: 310 IA 311

[Close]

BLAST of MELO3C009040 vs. ExPASy TrEMBL
Match: A0A5A7V2R5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold160G00370 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.5e-58
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 21  GLLNKPFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTMCSL 80
           GLLNKPFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTMCSL
Sbjct: 134 GLLNKPFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTMCSL 193

Query: 81  RMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQFETVDVFRDAMHISNDQLRDIA 137
           RMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQFETVDVFRDAMHISNDQLRDIA
Sbjct: 194 RMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQFETVDVFRDAMHISNDQLRDIA 249

[Close]

BLAST of MELO3C009040 vs. ExPASy TrEMBL
Match: A0A5A7TYU4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002690 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 3.0e-27
Identity = 70/122 (57.38%), Postives = 80/122 (65.57%), Query Frame = 0


Query: 16  HLACKGLLNKPFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFP 75
           H A K LLNKPF HYD LSYVFEKD+ TGA  E F DI SN+    D V  +DG+DMEFP
Sbjct: 2   HPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNMSAGYDSVPTKDGIDMEFP 61

Query: 76  TMCSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKR-RGQFETVDVFRDAMHISNDQLRD 135
            MCS RMN+S +D MG R   S+  R GSS  KRK    QFET D+ R+ M  + DQLR 
Sbjct: 62  VMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATDQLRT 121

Query: 136 IA 137
           IA
Sbjct: 122 IA 123

[Close]

BLAST of MELO3C009040 vs. ExPASy TrEMBL
Match: A0A5D3DH48 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold334G00220 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 71/106 (66.98%), Postives = 78/106 (73.58%), Query Frame = 0


Query: 16  HLACKGLLNKPFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFP 75
           H A KGLLNK FPHYDELSYVF K   TGAS E F DI SNVPGES+GV+ EDGL MEF 
Sbjct: 47  HPAAKGLLNKFFPHYDELSYVFRKVCMTGASTETFADIESNVPGESEGVETEDGLSMEFL 106

Query: 76  TMCSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKR-RGQFETVDV 121
           TMCS RMN+SLED M  +P  ST  R+G + SKRKR R   ETV+V
Sbjct: 107 TMCSPRMNMSLEDVMVTQPGRSTNCRLGFNESKRKRGRQTIETVEV 152

[Close]

BLAST of MELO3C009040 vs. ExPASy TrEMBL
Match: A0A5A7TLN6 (RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00410 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 71/106 (66.98%), Postives = 78/106 (73.58%), Query Frame = 0


Query: 16  HLACKGLLNKPFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFP 75
           H A KGLLNK FPHYDELSYVF K   TGAS E F DI SNVPGES+GV+ EDGL MEF 
Sbjct: 609 HPAAKGLLNKFFPHYDELSYVFRKVCMTGASTETFADIESNVPGESEGVETEDGLSMEFL 668

Query: 76  TMCSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKR-RGQFETVDV 121
           TMCS RMN+SLED M  +P  ST  R+G + SKRKR R   ETV+V
Sbjct: 669 TMCSPRMNMSLEDVMVTQPGRSTNCRLGFNESKRKRGRQTIETVEV 714

The following BLAST results are available for this feature:

BLAST of MELO3C009040 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK29878.1	2.6e-62	100.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0060069.1	3.0e-58	100.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048148.1	6.1e-27	57.38	retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon p...	[more]
TYK22883.1	2.3e-26	66.98	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0042491.1	2.3e-26	66.98	RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C009040 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C009040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E267	1.3e-62	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V2R5	1.5e-58	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TYU4	3.0e-27	57.38	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DH48	1.1e-26	66.98	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TLN6	1.1e-26	66.98	RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of MELO3C009040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C009040.1	MELO3C009040.1	mRNA