MELO3C008976 (gene) Melon (DHL92) v4

Overview


Name	MELO3C008976
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr08: 20751830 .. 20752064 (+)
RNA-Seq Expression	MELO3C008976
Synteny	MELO3C008976

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAATGTACGCGCACCCTGACCTTCTCGCCCGTCTGAGGGTAGGGTCGGATCGAGTGAATCAAAGAGGAAGAGGGGAAGTCAGCGAGAGGTCAAGCTTGAAGTCATACATATGGTGTTGGAGTGTACGAACGACCAACTCAGAAAGATTGCGGAGTGGCCTGCACGCGTCGTTGCCAATGATAACCTTGTGCGCCAGGAATTCATCTGCATATTACGTGAGATGCCGAAACTAA

mRNA sequence

GAGAATGTACGCGCACCCTGACCTTCTCGCCCGTCTGAGGGTAGGGTCGGATCGAGTGAATCAAAGAGGAAGAGGGGAAGTCAGCGAGAGGTCAAGCTTGAAGTCATACATATGGTGTTGGAGTGTACGAACGACCAACTCAGAAAGATTGCGGAGTGGCCTGCACGCGTCGTTGCCAATGATAACCTTGTGCGCCAGGAATTCATCTGCATATTACGTGAGATGCCGAAACTAA

Coding sequence (CDS)

ATGTACGCGCACCCTGACCTTCTCGCCCGTCTGAGGGTAGGGTCGGATCGAGTGAATCAAAGAGGAAGAGGGGAAGTCAGCGAGAGGTCAAGCTTGAAGTCATACATATGGTGTTGGAGTGTACGAACGACCAACTCAGAAAGATTGCGGAGTGGCCTGCACGCGTCGTTGCCAATGATAACCTTGTGCGCCAGGAATTCATCTGCATATTACGTGAGATGCCGAAACTAA

Protein sequence

MYAHPDLLARLRVGSDRVNQRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLPMITLCARNSSAYYVRCRN

Homology

[Close]

BLAST of MELO3C008976 vs. NCBI nr
Match: TYK23166.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 2.2e-21
Identity = 55/76 (72.37%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 1   MYAHPDLLARLRVGSDRVNQRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLPMI 60
           MY H DLLA  RVGSDRV++RGRGE SER+S KS+IW  SVRTTNS RLRSGLHA L M 
Sbjct: 141 MYTHHDLLAHQRVGSDRVDRRGRGEASERASFKSHIWFLSVRTTNSGRLRSGLHAPLLMT 200

Query: 61  TLCARNSSAYYVRCRN 77
           T+C+RNS AY VRC+N
Sbjct: 201 TMCSRNSYAYCVRCQN 216

[Close]

BLAST of MELO3C008976 vs. NCBI nr
Match: KAA0048405.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 6.9e-20
Identity = 53/76 (69.74%), Postives = 61/76 (80.26%), Query Frame = 0


Query: 1   MYAHPDLLARLRVGSDRVNQRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLPMI 60
           MY HPDLLA  RVGSD+V++RGRGEVSE SSLK YIW  + +T+NS RLRSG HA+L M 
Sbjct: 165 MYVHPDLLALQRVGSDQVDRRGRGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQMT 224

Query: 61  TLCARNSSAYYVRCRN 77
           T CARN SAY VRC+N
Sbjct: 225 TTCARNFSAYCVRCQN 240

[Close]

BLAST of MELO3C008976 vs. NCBI nr
Match: TYK08719.1 (hypothetical protein E5676_scaffold76G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 6.9e-20
Identity = 53/76 (69.74%), Postives = 61/76 (80.26%), Query Frame = 0


Query: 1   MYAHPDLLARLRVGSDRVNQRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLPMI 60
           MY HPDLLA  RVGSD+V++RGRGEVSE SSLK YIW  + +T+NS RLRSG HA+L M 
Sbjct: 27  MYVHPDLLALQRVGSDQVDRRGRGEVSETSSLKRYIWGSTKQTSNSGRLRSGQHATLQMT 86

Query: 61  TLCARNSSAYYVRCRN 77
           T CARN SAY VRC+N
Sbjct: 87  TTCARNFSAYCVRCQN 102

[Close]

BLAST of MELO3C008976 vs. NCBI nr
Match: KAA0056563.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 2.6e-19
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 1   MYAHPDLLARLRVGSDRVNQRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLPMI 60
           MY HPDLLA  RVG D+V++RGRGEVSE SSLK YIW  + +T+NS RLRSG HA+L M 
Sbjct: 160 MYVHPDLLALQRVGPDQVDRRGRGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQMT 219

Query: 61  TLCARNSSAYYVRCRN 77
           T CARN SAY VRC+N
Sbjct: 220 TTCARNFSAYCVRCQN 235

[Close]

BLAST of MELO3C008976 vs. NCBI nr
Match: KAA0062452.1 (hypothetical protein E6C27_scaffold130G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 5.9e-19
Identity = 51/76 (67.11%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1   MYAHPDLLARLRVGSDRVNQRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLPMI 60
           MY HPDLLA  RVG D+V++RGRGEVSE SSLK YIW  + +T+NS RLRSG HA+L M 
Sbjct: 54  MYVHPDLLALQRVGPDQVDRRGRGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQMT 113

Query: 61  TLCARNSSAYYVRCRN 77
           T CARN  AY+VRC N
Sbjct: 114 TTCARNFFAYWVRCHN 129

[Close]

BLAST of MELO3C008976 vs. ExPASy TrEMBL
Match: A0A5D3DHQ9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001910 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.0e-21
Identity = 55/76 (72.37%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 1   MYAHPDLLARLRVGSDRVNQRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLPMI 60
           MY H DLLA  RVGSDRV++RGRGE SER+S KS+IW  SVRTTNS RLRSGLHA L M 
Sbjct: 141 MYTHHDLLAHQRVGSDRVDRRGRGEASERASFKSHIWFLSVRTTNSGRLRSGLHAPLLMT 200

Query: 61  TLCARNSSAYYVRCRN 77
           T+C+RNS AY VRC+N
Sbjct: 201 TMCSRNSYAYCVRCQN 216

[Close]

BLAST of MELO3C008976 vs. ExPASy TrEMBL
Match: A0A5D3CED6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00220 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.4e-20
Identity = 53/76 (69.74%), Postives = 61/76 (80.26%), Query Frame = 0


Query: 1   MYAHPDLLARLRVGSDRVNQRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLPMI 60
           MY HPDLLA  RVGSD+V++RGRGEVSE SSLK YIW  + +T+NS RLRSG HA+L M 
Sbjct: 27  MYVHPDLLALQRVGSDQVDRRGRGEVSETSSLKRYIWGSTKQTSNSGRLRSGQHATLQMT 86

Query: 61  TLCARNSSAYYVRCRN 77
           T CARN SAY VRC+N
Sbjct: 87  TTCARNFSAYCVRCQN 102

[Close]

BLAST of MELO3C008976 vs. ExPASy TrEMBL
Match: A0A5A7U437 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G001310 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.4e-20
Identity = 53/76 (69.74%), Postives = 61/76 (80.26%), Query Frame = 0


Query: 1   MYAHPDLLARLRVGSDRVNQRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLPMI 60
           MY HPDLLA  RVGSD+V++RGRGEVSE SSLK YIW  + +T+NS RLRSG HA+L M 
Sbjct: 165 MYVHPDLLALQRVGSDQVDRRGRGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQMT 224

Query: 61  TLCARNSSAYYVRCRN 77
           T CARN SAY VRC+N
Sbjct: 225 TTCARNFSAYCVRCQN 240

[Close]

BLAST of MELO3C008976 vs. ExPASy TrEMBL
Match: A0A5A7UL03 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G00680 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.3e-19
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 1   MYAHPDLLARLRVGSDRVNQRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLPMI 60
           MY HPDLLA  RVG D+V++RGRGEVSE SSLK YIW  + +T+NS RLRSG HA+L M 
Sbjct: 160 MYVHPDLLALQRVGPDQVDRRGRGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQMT 219

Query: 61  TLCARNSSAYYVRCRN 77
           T CARN SAY VRC+N
Sbjct: 220 TTCARNFSAYCVRCQN 235

[Close]

BLAST of MELO3C008976 vs. ExPASy TrEMBL
Match: A0A5A7V2L2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00330 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.8e-19
Identity = 51/76 (67.11%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1   MYAHPDLLARLRVGSDRVNQRGRGEVSERSSLKSYIWCWSVRTTNSERLRSGLHASLPMI 60
           MY HPDLLA  RVG D+V++RGRGEVSE SSLK YIW  + +T+NS RLRSG HA+L M 
Sbjct: 54  MYVHPDLLALQRVGPDQVDRRGRGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQMT 113

Query: 61  TLCARNSSAYYVRCRN 77
           T CARN  AY+VRC N
Sbjct: 114 TTCARNFFAYWVRCHN 129

The following BLAST results are available for this feature:

BLAST of MELO3C008976 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK23166.1	2.2e-21	72.37	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048405.1	6.9e-20	69.74	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK08719.1	6.9e-20	69.74	hypothetical protein E5676_scaffold76G00220 [Cucumis melo var. makuwa]	[more]
KAA0056563.1	2.6e-19	68.42	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0062452.1	5.9e-19	67.11	hypothetical protein E6C27_scaffold130G00330 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C008976 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C008976 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DHQ9	1.0e-21	72.37	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CED6	3.4e-20	69.74	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U437	3.4e-20	69.74	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UL03	1.3e-19	68.42	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V2L2	2.8e-19	67.11	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C008976 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 76..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008976.1	MELO3C008976.1	mRNA