MELO3C008973.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C008973.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Unknown protein
Location	chr08: 20738025 .. 20738366 (-)
RNA-Seq Expression	MELO3C008973.jh1
Synteny	MELO3C008973.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAGCAACAATCACCGTAGCCGTAGGCCGACCCAAAGACCTGACGGCCACTGTATCCTCAACCAGAATTGCCTTCCCTTCCAAATCCCCAAAAGGATTCCCAGTGATTACATTACACGCACCACCAGAGAGACCGCACTGAATAGAGCGAATAGGAATCAAACAACTGGAAGAAGATCCACCATAAGCCATCCAGAGAGATCGACCGCCAAGATCAATAGCGAGATGGACGAGCTTAATAAGAGAACCATGAAAAACAGTGGCCAAATACTGATTGGTGAGGAAATCTTTAGTGAGGAGGATGACGAGAGAGAAGGTTTCGCCATGGAAGAGGGTTAA

mRNA sequence

ATGAAGAGCAACAATCACCGTAGCCGTAGGCCGACCCAAAGACCTGACGGCCACTGTATCCTCAACCAGAATTGCCTTCCCTTCCAAATCCCCAAAAGGATTCCCAGTGATTACATTACACGCACCACCAGAGAGACCGCACTGAATAGAGCGAATAGGAATCAAACAACTGGAAGAAGATCCACCATAAGCCATCCAGAGAGATCGACCGCCAAGATCAATAGCGAGATGGACGAGCTTAATAAGAGAACCATGAAAAACAGTGGCCAAATACTGATTGGTGAGGAAATCTTTAGTGAGGAGGATGACGAGAGAGAAGGTTTCGCCATGGAAGAGGGTTAA

Coding sequence (CDS)

ATGAAGAGCAACAATCACCGTAGCCGTAGGCCGACCCAAAGACCTGACGGCCACTGTATCCTCAACCAGAATTGCCTTCCCTTCCAAATCCCCAAAAGGATTCCCAGTGATTACATTACACGCACCACCAGAGAGACCGCACTGAATAGAGCGAATAGGAATCAAACAACTGGAAGAAGATCCACCATAAGCCATCCAGAGAGATCGACCGCCAAGATCAATAGCGAGATGGACGAGCTTAATAAGAGAACCATGAAAAACAGTGGCCAAATACTGATTGGTGAGGAAATCTTTAGTGAGGAGGATGACGAGAGAGAAGGTTTCGCCATGGAAGAGGGTTAA

Protein sequence

MKSNNHRSRRPTQRPDGHCILNQNCLPFQIPKRIPSDYITRTTRETALNRANRNQTTGRRSTISHPERSTAKINSEMDELNKRTMKNSGQILIGEEIFSEEDDEREGFAMEEG

Homology

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BLAST of MELO3C008973.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KFQ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G237605 PE=4 SV=1)

HSP 1 Score: 152 bits (385), Expect = 1.34e-45
Identity = 86/122 (70.49%), Postives = 90/122 (73.77%), Query Frame = 0


Query: 1   MKSNNHRSRRPTQRPDGHCILNQNCLPFQIPKRIPSDYITRTTRE---------TALNRA 60
           MKS+NHR RRP QRPDGH ILNQN LPFQIPK IPSDYITR T             LNRA
Sbjct: 1   MKSDNHRCRRPVQRPDGHRILNQNRLPFQIPKGIPSDYITRATNRPRSTPTSSRNTLNRA 60

Query: 61  NRNQTTGRRSTISHPERSTAKINSEMDELNKRTMKNSGQILIGEEIFSEEDDEREGFAME 113
             N+T GRRST SHPER  AKIN EMD LN+R M+NSG ILIGE IFSE DDEREG AME
Sbjct: 61  AGNRTAGRRSTTSHPERLAAKINGEMDGLNRRAMENSGYILIGEGIFSEGDDEREGLAME 120

The following BLAST results are available for this feature:

BLAST of MELO3C008973.jh1 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C008973.jh1 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C008973.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFQ4	1.34e-45	70.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G237605 PE=4 SV=1	[more]

BLAST of MELO3C008973.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008973.jh1.t1	MELO3C008973.jh1.t1	mRNA