MELO3C008921 (gene) Melon (DHL92) v4

Overview


Name	MELO3C008921
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1
Location	chr08: 22627131 .. 22628563 (+)
RNA-Seq Expression	MELO3C008921
Synteny	MELO3C008921

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGGTGAGGGTATAAGTGTATTTATCGAAGTGGATTCAGTCATTGCAGATGACGATGGATTTGTGATTCGTATAGAAGGTGCAGGATTAGATCCATGACCGAAATTGGAGAGTTTGTGTGCTCTCCATGTTAAGGAAAATTGGAACTTTCAAAGAACATTATTTGAAGAATCAAGTCCGATTGAGATGAGATTGCAAATTTTCATTAGAAGAAAAGGCAAAGATGAAGTTCCTTCGATAAACTCCTCATTCTTAACAGACTCACAACAGAATAATAAAAACTAAACTAATCTCAACAATATAACTGATAACAGATACTACAAAATTTCAGTCTGCCTTCAATCCATTCACCATATACATAATATATATAGTTGAATTTGAAGATGGACGGACAAAATTCAAGCAATGCTCAATAATTTTTAAAACTCTTTATGTAATAGCTTAAGTAATAAGATTTTATAAAATCAGAGCCATCTAAGTCTGTTCCAGTTTCCGTCAAAACTCAAAAAAGGGAAATTCTAAGAATTTCAACTCGTCCTATTGATTTGAACAGAAAATATCCTTCCATTTTTGAAGAATTTCTTCCTGGAGACATTGGAATTCAACCTCATGTCAAGCTAACCTCTAAAGTTCTTGAACTTGATGCAGAACAACTAATGTATCAAACTTCAACTTGTAGACAATTAGCTGCAGATCGACTTGTGAAACTCTTAATGTTATCAAGAGTTAACAAAGTAACTGTAAATGTCGTTGATCAATTGAAATGGGACTTGGGTCTTCCTAAAGATTATGTTCAAAGTATAGTTCCTAATTTTCCAGATTACTTCAAAGTTGTAGGACATCAAAATTTTGCATCTGGATTAGGTGATACGCGGGTATTGGAATTGGTATGTTGGAACAATGAATTGACCACTTCAGTTGTAGAGAAGATGGCTGCAAAAGTAAAGTTTGATACATATAAAGGAATGCATATTACTTTTCCTATGAAATACTCGAACGGTTTTGAGATGGATAAGTTCAAGAAATGGGTGGATGAGTGGCAAAAGCTACCTTACATCTCTCCCTATGAAAATGCATCACATCTTTCTCCTAATAATGATGAATCTGAAAAGTGGACTGTTGCGATTTTACATGAGCTTCTTCATATGCTTGTCACGAAGAAGACTGAGAAGGAAAATATATTGTGTATAGGTGAGTATTTTGGTTTAAGAGAGCATTGCTTCACCATCTAGGGATATTCTACATATCAAGTAAGGCTGGAACCTACATGGTTGTCTTGAAAGAGGGGTATAAAAGGGGTTCCGTGGTTGAGAGTAATCCTTTGATGAACATTAGAAACAAGTACCTTTACCTTATGAACATAGTGGAGGAAGACAAACAACAAGCAAGCATATCGGTACTCGCCAACAGAAGCAAAAACAGAAAGAAAG

mRNA sequence

ATGGTAGGTGAGGGTATAAGTGTATTTATCGAAGTGGATTCAGTCATTGCAGATGACGATGGATTTGTGATTCGTATAGAAGAGCCATCTAAGTCTGTTCCAGTTTCCGTCAAAACTCAAAAAAGGGAAATTCTAAGAATTTCAACTCGTCCTATTGATTTGAACAGAAAATATCCTTCCATTTTTGAAGAATTTCTTCCTGGAGACATTGGAATTCAACCTCATGTCAAGCTAACCTCTAAAGTTCTTGAACTTGATGCAGAACAACTAATGTATCAAACTTCAACTTGTAGACAATTAGCTGCAGATCGACTTGTGAAACTCTTAATGTTATCAAGAGTTAACAAAGTAACTGTAAATGTCGTTGATCAATTGAAATGGGACTTGGGTCTTCCTAAAGATTATGTTCAAAGTATAGTTCCTAATTTTCCAGATTACTTCAAAGTTGTAGGACATCAAAATTTTGCATCTGGATTAGGTGATACGCGGGTATTGGAATTGGTATGTTGGAACAATGAATTGACCACTTCAGTTGTAGAGAAGATGGCTGCAAAAGTAAAGTTTGATACATATAAAGGAATGCATATTACTTTTCCTATGAAATACTCGAACGGTTTTGAGATGGATAAGTTCAAGAAATGGGTGGATGAGTGGCAAAAGCTACCTTACATCTCTCCCTATGAAAATGCATCACATCTTTCTCCTAATAATGATGAATCTGAAAAGTGGACTGTTGCGATTTTACATGAGCTTCTTCATATGCTTGTCACGAAGAAGACTGAGAAGGAAAATATATTGTGTATAGGGATATTCTACATATCAAGTAAGGCTGGAACCTACATGGTTGTCTTGAAAGAGGGGTATAAAAGGGGTTCCGTGGTTGAGAGTAATCCTTTGATGAACATTAGAAACAAGTACCTTTACCTTATGAACATAGTGGAGGAAGACAAACAACAAGCAAGCATATCGGTACTCGCCAACAGAAGCAAAAACAGAAAGAAAG

Coding sequence (CDS)

ATGGTAGGTGAGGGTATAAGTGTATTTATCGAAGTGGATTCAGTCATTGCAGATGACGATGGATTTGTGATTCGTATAGAAGAGCCATCTAAGTCTGTTCCAGTTTCCGTCAAAACTCAAAAAAGGGAAATTCTAAGAATTTCAACTCGTCCTATTGATTTGAACAGAAAATATCCTTCCATTTTTGAAGAATTTCTTCCTGGAGACATTGGAATTCAACCTCATGTCAAGCTAACCTCTAAAGTTCTTGAACTTGATGCAGAACAACTAATGTATCAAACTTCAACTTGTAGACAATTAGCTGCAGATCGACTTGTGAAACTCTTAATGTTATCAAGAGTTAACAAAGTAACTGTAAATGTCGTTGATCAATTGAAATGGGACTTGGGTCTTCCTAAAGATTATGTTCAAAGTATAGTTCCTAATTTTCCAGATTACTTCAAAGTTGTAGGACATCAAAATTTTGCATCTGGATTAGGTGATACGCGGGTATTGGAATTGGTATGTTGGAACAATGAATTGACCACTTCAGTTGTAGAGAAGATGGCTGCAAAAGTAAAGTTTGATACATATAAAGGAATGCATATTACTTTTCCTATGAAATACTCGAACGGTTTTGAGATGGATAAGTTCAAGAAATGGGTGGATGAGTGGCAAAAGCTACCTTACATCTCTCCCTATGAAAATGCATCACATCTTTCTCCTAATAATGATGAATCTGAAAAGTGGACTGTTGCGATTTTACATGAGCTTCTTCATATGCTTGTCACGAAGAAGACTGAGAAGGAAAATATATTGTGTATAGGGATATTCTACATATCAAGTAAGGCTGGAACCTACATGGTTGTCTTGAAAGAGGGGTATAAAAGGGGTTCCGTGGTTGAGAGTAATCCTTTGATGAACATTAGAAACAAGTACCTTTACCTTATGAACATAGTGGAGGAAGACAAACAACAAGCAAGCATATCGGTACTCGCCAACAGAAGCAAAAACAGAAAGAAA

Protein sequence

MVGEGISVFIEVDSVIADDDGFVIRIEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPSIFEEFLPGDIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVNVVDQLKWDLGLPKDYVQSIVPNFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGIFYISSKAGTYMVVLKEGYKRGSVVESNPLMNIRNKYLYLMNIVEEDKQQASISVLANRSKNRKK

Homology

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BLAST of MELO3C008921 vs. NCBI nr
Match: TYK05469.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 620.5 bits (1599), Expect = 8.2e-174
Identity = 317/334 (94.91%), Postives = 317/334 (94.91%), Query Frame = 0


Query: 1   MVGEGISVFIEVDSVIADDDGFVIRIEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPS 60
           MVGEGISVFIEVDSVIADDDGFVIRIEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPS
Sbjct: 47  MVGEGISVFIEVDSVIADDDGFVIRIEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPS 106

Query: 61  IFEEFLPGDIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVN 120
           IFEEFLPGDIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVN
Sbjct: 107 IFEEFLPGDIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVN 166

Query: 121 VVDQLKWDLGLPKDYVQSIVPNFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVE 180
           VVDQLKWDLGLPKDYVQSIVPNFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVE
Sbjct: 167 VVDQLKWDLGLPKDYVQSIVPNFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVE 226

Query: 181 KMAAKVKFDTYKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDES 240
           KMAAKVKFDTYKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDES
Sbjct: 227 KMAAKVKFDTYKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDES 286

Query: 241 EKWTVAILHELLHMLVTKKTEKENILCIGIFYISSKAGTYMVVLKEGYKRGSVVESNPLM 300
           EKWTVAILHELLHMLVTKKTEKENILCI                 EGYKRGSVVESNPLM
Sbjct: 287 EKWTVAILHELLHMLVTKKTEKENILCI-----------------EGYKRGSVVESNPLM 346

Query: 301 NIRNKYLYLMNIVEEDKQQASISVLANRSKNRKK 335
           NIRNKYLYLMNIVEEDKQQASISVLANRSKNRKK
Sbjct: 347 NIRNKYLYLMNIVEEDKQQASISVLANRSKNRKK 363

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BLAST of MELO3C008921 vs. NCBI nr
Match: KAA0034927.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 611.3 bits (1575), Expect = 5.0e-171
Identity = 312/334 (93.41%), Postives = 316/334 (94.61%), Query Frame = 0


Query: 1   MVGEGISVFIEVDSVIADDDGFVIRIEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPS 60
           MVGEGISVFIEVDSV+ADDDGFVIRIEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPS
Sbjct: 47  MVGEGISVFIEVDSVVADDDGFVIRIEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPS 106

Query: 61  IFEEFLPGDIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVN 120
           IFEEFLP DIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTV+
Sbjct: 107 IFEEFLPRDIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVS 166

Query: 121 VVDQLKWDLGLPKDYVQSIVPNFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVE 180
           VVDQLKWDLGLPKDYVQSIVP+FPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVE
Sbjct: 167 VVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVE 226

Query: 181 KMAAKVKFDTYKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDES 240
           KMAAKVKFDTYKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDES
Sbjct: 227 KMAAKVKFDTYKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDES 286

Query: 241 EKWTVAILHELLHMLVTKKTEKENILCIGIFYISSKAGTYMVVLKEGYKRGSVVESNPLM 300
           EKWTVAILHELLHMLVTKKTEKENILCI                 EGYKRGSVVESNPLM
Sbjct: 287 EKWTVAILHELLHMLVTKKTEKENILCI-----------------EGYKRGSVVESNPLM 346

Query: 301 NIRNKYLYLMNIVEEDKQQASISVLANRSKNRKK 335
           NIRNKYL+LMNIVEEDKQQASISVLANRSKNRKK
Sbjct: 347 NIRNKYLHLMNIVEEDKQQASISVLANRSKNRKK 363

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BLAST of MELO3C008921 vs. NCBI nr
Match: TYK12080.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 508.8 bits (1309), Expect = 3.5e-140
Identity = 262/327 (80.12%), Postives = 279/327 (85.32%), Query Frame = 0


Query: 28  EPSKSVPVSVKTQKREILRISTRPIDLNRKYPSIFEEFLPGDIGIQPHVKLTSKVLELDA 87
           EPSKSVPVS+ TQKREILRI  RPIDL RKYPSIFEEFLPG IG+QPHVKLTSKVLELDA
Sbjct: 65  EPSKSVPVSIITQKREILRIPMRPIDLIRKYPSIFEEFLPGGIGVQPHVKLTSKVLELDA 124

Query: 88  -EQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVNVVDQLKWDLGLPKDYVQSIVPNFPDY 147
            EQL YQTSTCRQ AADRL+KLLMLSRV+KV V+++DQLKWDLGLPKD+VQSIVP FPDY
Sbjct: 125 EEQLTYQTSTCRQQAADRLLKLLMLSRVHKVPVSIIDQLKWDLGLPKDFVQSIVPEFPDY 184

Query: 148 FKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGF 207
           FKVVGHQNFASG GD RVLELVCWNNEL TSV+EKMAAKVK DT K MHITFPMKYSNGF
Sbjct: 185 FKVVGHQNFASGSGDMRVLELVCWNNELATSVLEKMAAKVKHDTSKRMHITFPMKYSNGF 244

Query: 208 EMD-KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENI 267
           EMD KFKKWVDEWQKLPYISPYENASHLSPN+DES+KWTVAILHELLHMLVTKKTEKENI
Sbjct: 245 EMDKKFKKWVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENI 304

Query: 268 LCI------------------GIFYISSKAGTYMVVLKEGYKRGSVVESNPLMNIRNKYL 327
           LCI                  GIFYISSKAGTY VVLKEGYKRGSVVESNPLMNIRNKYL
Sbjct: 305 LCIGEYFGLRSRFKRALLHHPGIFYISSKAGTYTVVLKEGYKRGSVVESNPLMNIRNKYL 364

Query: 328 YLMNIVEEDKQQASISVLANRSKNRKK 335
           +LMN VEED +  +  +   + K  +K
Sbjct: 365 HLMNTVEEDSKTTAKHISTRQQKQEQK 391

[Close]

BLAST of MELO3C008921 vs. NCBI nr
Match: KAA0056510.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 508.8 bits (1309), Expect = 3.5e-140
Identity = 262/327 (80.12%), Postives = 279/327 (85.32%), Query Frame = 0


Query: 28  EPSKSVPVSVKTQKREILRISTRPIDLNRKYPSIFEEFLPGDIGIQPHVKLTSKVLELDA 87
           EPSKSVPVS+ TQKREILRI  RPIDL RKYPSIFEEFLPG IG+QPHVKLTSKVLELDA
Sbjct: 65  EPSKSVPVSIITQKREILRIPMRPIDLIRKYPSIFEEFLPGGIGVQPHVKLTSKVLELDA 124

Query: 88  -EQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVNVVDQLKWDLGLPKDYVQSIVPNFPDY 147
            EQL YQTSTCRQ AADRL+KLLMLSRV+KV V+++DQLKWDLGLPKD+VQSIVP FPDY
Sbjct: 125 EEQLTYQTSTCRQQAADRLLKLLMLSRVHKVPVSIIDQLKWDLGLPKDFVQSIVPEFPDY 184

Query: 148 FKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGF 207
           FKVVGHQNFASG GD RVLELVCWNNEL TSV+EKMAAKVK DT K MHITFPMKYSNGF
Sbjct: 185 FKVVGHQNFASGSGDMRVLELVCWNNELATSVLEKMAAKVKHDTSKRMHITFPMKYSNGF 244

Query: 208 EMD-KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENI 267
           EMD KFKKWVDEWQKLPYISPYENASHLSPN+DES+KWTVAILHELLHMLVTKKTEKENI
Sbjct: 245 EMDKKFKKWVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENI 304

Query: 268 LCI------------------GIFYISSKAGTYMVVLKEGYKRGSVVESNPLMNIRNKYL 327
           LCI                  GIFYISSKAGTY VVLKEGYKRGSVVESNPLMNIRNKYL
Sbjct: 305 LCIGEYFGLRSRFKRALLHHPGIFYISSKAGTYTVVLKEGYKRGSVVESNPLMNIRNKYL 364

Query: 328 YLMNIVEEDKQQASISVLANRSKNRKK 335
           +LMN VEED +  +  +   + K  +K
Sbjct: 365 HLMNTVEEDSKTTAKHISTRQQKQEQK 391

[Close]

BLAST of MELO3C008921 vs. NCBI nr
Match: XP_031741647.1 (protein WHAT'S THIS FACTOR 9, mitochondrial, partial [Cucumis sativus])

HSP 1 Score: 508.1 bits (1307), Expect = 5.9e-140
Identity = 262/327 (80.12%), Postives = 280/327 (85.63%), Query Frame = 0


Query: 28  EPSKSVPVSVKTQKREILRISTRPIDLNRKYPSIFEEFLPGDIGIQPHVKLTSKVLELDA 87
           EPSKSVP+S+ TQKREILRI TRPIDL RKYPSIFEEFLPG IGIQPHVKLTSKVLELDA
Sbjct: 106 EPSKSVPLSIITQKREILRIPTRPIDLIRKYPSIFEEFLPGGIGIQPHVKLTSKVLELDA 165

Query: 88  -EQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVNVVDQLKWDLGLPKDYVQSIVPNFPDY 147
            EQL YQTSTCRQ AADRLVKLLMLSRV+KV V+++DQLKWDLGLPKDYV+SIVP+FPDY
Sbjct: 166 EEQLTYQTSTCRQQAADRLVKLLMLSRVHKVPVSIIDQLKWDLGLPKDYVESIVPDFPDY 225

Query: 148 FKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGF 207
           FKVVGHQNFASG GD RVLELVCWNNEL TSV+EKMA KVK D  KGM+ITFPMKYSNGF
Sbjct: 226 FKVVGHQNFASGSGDMRVLELVCWNNELATSVIEKMAVKVKPDKSKGMYITFPMKYSNGF 285

Query: 208 EMD-KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENI 267
           EMD KFKKWVDEWQKLPYISPYENASHLSPN+DES+KWTVAILHELLHMLVTKKTEKENI
Sbjct: 286 EMDKKFKKWVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENI 345

Query: 268 LCI------------------GIFYISSKAGTYMVVLKEGYKRGSVVESNPLMNIRNKYL 327
           LCI                  GIFYISSKAGTY VVLKEGYKRGSVVESNPLMNIRNKYL
Sbjct: 346 LCIGEYFGLRSRFKRALLHHPGIFYISSKAGTYTVVLKEGYKRGSVVESNPLMNIRNKYL 405

Query: 328 YLMNIVEEDKQQASISVLANRSKNRKK 335
           +LMN VEED +  +  +   + K  +K
Sbjct: 406 HLMNTVEEDSKTTTKHIDTRQQKQEQK 432

[Close]

BLAST of MELO3C008921 vs. ExPASy Swiss-Prot
Match: Q9ZUZ6 (Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=WTF9 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.6e-39
Identity = 105/306 (34.31%), Postives = 169/306 (55.23%), Query Frame = 0


Query: 26  IEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPSIFEEFLPGDIGIQPHVKLTSKVLEL 85
           ++EP++ +P+S  ++K     +ST+     RK+PSIFEEF+  +  + P  +LT +  EL
Sbjct: 60  VQEPNRCIPISAISKKTRQFDVSTKIAHFLRKFPSIFEEFVGPEYNL-PWFRLTPEATEL 119

Query: 86  D-AEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVNVVDQLKWDLGLPKDYVQSIVPNFP 145
           D  E+++YQTS       DRL KL+++S+ N + +++V  +KW LGLP DY+Q    N  
Sbjct: 120 DRQERVVYQTSA--DDLRDRLKKLILMSKDNVLPLSIVQGMKWYLGLPDDYLQFPDMNLD 179

Query: 146 DYFKVVGHQNFASGLGDTRVLELVCWN-NELTTSVVEKMAAKVKFDTYKGMHITFPMKYS 205
             F+ V  ++   GL        V +N  +   SV++K A K +        I FP+  S
Sbjct: 180 SSFRFVDMEDGVKGLA-------VDYNGGDKVLSVLQKNAMKKRRGEVSLEEIEFPLFPS 239

Query: 206 NGFEMD-KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEK 265
            G  +  K + W+ E+QKLPY+SPY++ S L P++D +EK  V  LHELL + V    E+
Sbjct: 240 KGCRLRVKIEDWLMEFQKLPYVSPYDDYSCLDPSSDIAEKRVVGFLHELLCLFVEHSAER 299

Query: 266 ENILCI------------------GIFYISSKAGTYMVVLKEGYKRGSVVESNPLMNIRN 311
           + +LC+                   IFY+S K  T   +L+E Y+  + VE++P++ +R 
Sbjct: 300 KKLLCLKKHFGLPQKVHKAFERHPQIFYLSMKNKTCTAILREPYRDKASVETHPVLGVRK 355

[Close]

BLAST of MELO3C008921 vs. ExPASy Swiss-Prot
Match: B6TTV8 (Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 6.8e-22
Identity = 78/289 (26.99%), Postives = 142/289 (49.13%), Query Frame = 0


Query: 50  RPIDLNRKYPSIFEEFLPGDIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADRLVKLL 109
           R I L R++P +F+    G   ++  +   ++ L LD  +L  ++     LA  +L KLL
Sbjct: 110 RLIALLRRFPGVFDVVEEGVYSLRFRLTPAAERLYLDELRLRNES---EGLAVAKLRKLL 169

Query: 110 MLSRVNKVTVNVVDQLKWDLGLPKDYVQSIVPNFPDYFKVVGHQNFASGLGDTRVLELVC 169
           M+S+  ++ +  V  LK DLGLP ++  ++   +P YF+VV        +     LEL  
Sbjct: 170 MMSQEKRILIEKVAHLKHDLGLPPEFRDTVCLRYPQYFRVV-------RMDRGPALELTH 229

Query: 170 WNNELTTSVVE--KMAAKVKFDTYKGMHITFPMKYS-----NGFEMDKFK-KWVDEWQKL 229
           W+ EL  S  E  +  ++ +    + + I  P+K++      G ++ + + + +  ++++
Sbjct: 230 WDPELAVSAAELAEEESRAREAEERNLIIDRPLKFNRVRLPKGLKLTRGEARRIARFKEM 289

Query: 230 PYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCI------------- 289
           PYISPY + SHL   +DE EK    ++HE+L + V K+T  +++                
Sbjct: 290 PYISPYADFSHLRSGSDEKEKHACGVVHEILSLTVEKRTLVDHLTHFREEFRFSQSLRGM 349

Query: 290 -----GIFYISSKAGTYMVVLKEGYKRGSVVESNPLMNIRNKYLYLMNI 313
                 +FY+S K     V L+E YK   +VE N L+ ++ K   L+ +
Sbjct: 350 IIRHPDMFYVSFKGDRDSVFLREAYKDSQLVEKNQLVLLKEKMRALVAV 388

[Close]

BLAST of MELO3C008921 vs. ExPASy Swiss-Prot
Match: Q65XL5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0571100 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.5e-21
Identity = 78/289 (26.99%), Postives = 142/289 (49.13%), Query Frame = 0


Query: 50  RPIDLNRKYPSIFEEFLPGDIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADRLVKLL 109
           R I L +++P +FE    G   ++  +   ++ L LD   L  ++     LA  +L KLL
Sbjct: 116 RLIALLKRFPGVFEVVEEGVYSLRFRLTPAAERLYLDELHLKNES---EGLAVTKLRKLL 175

Query: 110 MLSRVNKVTVNVVDQLKWDLGLPKDYVQSIVPNFPDYFKVVGHQNFASGLGDTRVLELVC 169
           M+S+  ++ +  +  LK DLGLP ++  +I   +P YF+VV       G G    LEL  
Sbjct: 176 MMSQDKRILIEKIAHLKNDLGLPPEFRDTICLRYPQYFRVV---QMDRGPG----LELTH 235

Query: 170 WNNELTTSVVE--KMAAKVKFDTYKGMHITFPMKYS-----NGFEMDKFK-KWVDEWQKL 229
           W+ EL  S  E  +   + + +  + + I  P+K++      G ++ + + + V +++++
Sbjct: 236 WDPELAVSAAEVAEEENRAREEQERNLIIDRPLKFNRVKLPQGLKLSRGEARRVAQFKEM 295

Query: 230 PYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCI------------- 289
           PYISPY + SHL   + E EK    ++HE+L + + K+T  +++                
Sbjct: 296 PYISPYSDFSHLRSGSAEKEKHACGVVHEILSLTLEKRTLVDHLTHFREEFRFSQSLRGM 355

Query: 290 -----GIFYISSKAGTYMVVLKEGYKRGSVVESNPLMNIRNKYLYLMNI 313
                 +FY+S K     V L+E YK   +VE + L+ ++ K   L+ +
Sbjct: 356 LIRHPDMFYVSLKGDRDSVFLREAYKNSQLVEKSKLVLLKEKMRALVAV 394

[Close]

BLAST of MELO3C008921 vs. ExPASy Swiss-Prot
Match: A0MFS5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01037 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.4e-19
Identity = 75/294 (25.51%), Postives = 138/294 (46.94%), Query Frame = 0


Query: 45  LRISTRPIDLNRKYPSIFEEFLPGDIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADR 104
           L+   R I L RKYP +FE    G   ++   K+TS+   L  +++  + +    +   +
Sbjct: 126 LKKRRRFIALLRKYPGVFEIVEEGAYSLR--FKMTSEAERLYLDEMRIR-NELEDVLVVK 185

Query: 105 LVKLLMLSRVNKVTVNVVDQLKWDLGLPKDYVQSIVPNFPDYFKVVGHQNFASGLGDTRV 164
           L KL+M+S   ++ +  +  LK DLGLP ++  +I   +P YF+VV      +       
Sbjct: 186 LRKLVMMSIDKRILLEKISHLKTDLGLPLEFRDTICQRYPQYFRVVPTPRGPA------- 245

Query: 165 LELVCWNNELTTSVVE--KMAAKVKFDTYKGMHITFPMKYS-----NGFEMDKFK-KWVD 224
           LEL  W+ EL  S  E  +   + +    + + I  P K++      G  + K + + + 
Sbjct: 246 LELTHWDPELAVSAAELSEDDNRTRESEERNLIIDRPPKFNRVKLPRGLNLSKSETRKIS 305

Query: 225 EWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCI-------- 284
           +++ + YISPY++ SHL     E EK    ++HELL +   K+T  +++           
Sbjct: 306 QFRDMQYISPYKDFSHLRSGTLEKEKHACGVIHELLSLTTEKRTLVDHLTHFREEFRFSQ 365

Query: 285 ----------GIFYISSKAGTYMVVLKEGYKRGSVVESNPLMNIRNKYLYLMNI 313
                      +FY+S K     V L+E Y+   +++ +PL  ++ K   L+++
Sbjct: 366 QLRGMLIRHPDLFYVSLKGERDSVFLREAYRNSELIDKDPLTLVKEKMRALVSV 409

[Close]

BLAST of MELO3C008921 vs. ExPASy Swiss-Prot
Match: Q689D6 (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.0e-18
Identity = 79/286 (27.62%), Postives = 138/286 (48.25%), Query Frame = 0


Query: 57  KYPSIFEEFLPGDIGIQPHVKLTSKVLEL---DAEQLMYQTSTCRQLAADRLVKLLMLSR 116
           K+P +FE +    +    + +LT K L+    + E ++ Q       A  RL KL+M+S 
Sbjct: 107 KFPHVFEIY-EHPVQRILYCRLTRKALDQIRHEHEAVLDQIPD----AVTRLRKLVMMSN 166

Query: 117 VNKVTVNVVDQLKWDLGLPKDYVQSIVPNFPDYFKVVGHQNFASGLGDTRVLELVCWNNE 176
             ++ +  V   + + GLP+D+  S++   P +F+++  +         + +E+V  +  
Sbjct: 167 TGRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRD-----KYIEIVEKDPN 226

Query: 177 LTTSVVEKMAA---KVKFDTYKGMHITFPMKYSNGFEMDK-FKKWVDEWQKLPYISPYEN 236
           L+   +E++     + K    + +  +F + +  GF++ K F+  V +WQ+LPY SPYE+
Sbjct: 227 LSICAIERVREIEYRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQRLPYWSPYED 286

Query: 237 ASHLSPNNDES----EKWTVAILHELLHMLVTKKTEKENILCI----------------- 296
            S     + E+    EK +VA +HELL + V KK   E I                    
Sbjct: 287 ISGYDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKEFLLQH 346

Query: 297 -GIFYISSKAG---TYMVVLKEGYKRGSVVESNPLMNIRNKYLYLM 311
            GIFYIS++      + V L+EGYKRG +VE N +   R +   L+
Sbjct: 347 QGIFYISTRGNYGKLHTVFLREGYKRGELVEPNDVYLARRRLAELV 382

[Close]

BLAST of MELO3C008921 vs. ExPASy TrEMBL
Match: A0A5D3C507 (Protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G001750 PE=4 SV=1)

HSP 1 Score: 620.5 bits (1599), Expect = 4.0e-174
Identity = 317/334 (94.91%), Postives = 317/334 (94.91%), Query Frame = 0


Query: 1   MVGEGISVFIEVDSVIADDDGFVIRIEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPS 60
           MVGEGISVFIEVDSVIADDDGFVIRIEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPS
Sbjct: 47  MVGEGISVFIEVDSVIADDDGFVIRIEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPS 106

Query: 61  IFEEFLPGDIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVN 120
           IFEEFLPGDIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVN
Sbjct: 107 IFEEFLPGDIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVN 166

Query: 121 VVDQLKWDLGLPKDYVQSIVPNFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVE 180
           VVDQLKWDLGLPKDYVQSIVPNFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVE
Sbjct: 167 VVDQLKWDLGLPKDYVQSIVPNFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVE 226

Query: 181 KMAAKVKFDTYKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDES 240
           KMAAKVKFDTYKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDES
Sbjct: 227 KMAAKVKFDTYKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDES 286

Query: 241 EKWTVAILHELLHMLVTKKTEKENILCIGIFYISSKAGTYMVVLKEGYKRGSVVESNPLM 300
           EKWTVAILHELLHMLVTKKTEKENILCI                 EGYKRGSVVESNPLM
Sbjct: 287 EKWTVAILHELLHMLVTKKTEKENILCI-----------------EGYKRGSVVESNPLM 346

Query: 301 NIRNKYLYLMNIVEEDKQQASISVLANRSKNRKK 335
           NIRNKYLYLMNIVEEDKQQASISVLANRSKNRKK
Sbjct: 347 NIRNKYLYLMNIVEEDKQQASISVLANRSKNRKK 363

[Close]

BLAST of MELO3C008921 vs. ExPASy TrEMBL
Match: A0A5A7T026 (Protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold103G00590 PE=4 SV=1)

HSP 1 Score: 611.3 bits (1575), Expect = 2.4e-171
Identity = 312/334 (93.41%), Postives = 316/334 (94.61%), Query Frame = 0


Query: 1   MVGEGISVFIEVDSVIADDDGFVIRIEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPS 60
           MVGEGISVFIEVDSV+ADDDGFVIRIEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPS
Sbjct: 47  MVGEGISVFIEVDSVVADDDGFVIRIEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPS 106

Query: 61  IFEEFLPGDIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVN 120
           IFEEFLP DIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTV+
Sbjct: 107 IFEEFLPRDIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVS 166

Query: 121 VVDQLKWDLGLPKDYVQSIVPNFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVE 180
           VVDQLKWDLGLPKDYVQSIVP+FPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVE
Sbjct: 167 VVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVE 226

Query: 181 KMAAKVKFDTYKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDES 240
           KMAAKVKFDTYKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDES
Sbjct: 227 KMAAKVKFDTYKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDES 286

Query: 241 EKWTVAILHELLHMLVTKKTEKENILCIGIFYISSKAGTYMVVLKEGYKRGSVVESNPLM 300
           EKWTVAILHELLHMLVTKKTEKENILCI                 EGYKRGSVVESNPLM
Sbjct: 287 EKWTVAILHELLHMLVTKKTEKENILCI-----------------EGYKRGSVVESNPLM 346

Query: 301 NIRNKYLYLMNIVEEDKQQASISVLANRSKNRKK 335
           NIRNKYL+LMNIVEEDKQQASISVLANRSKNRKK
Sbjct: 347 NIRNKYLHLMNIVEEDKQQASISVLANRSKNRKK 363

[Close]

BLAST of MELO3C008921 vs. ExPASy TrEMBL
Match: A0A5D3CKY8 (Protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00040 PE=4 SV=1)

HSP 1 Score: 508.8 bits (1309), Expect = 1.7e-140
Identity = 262/327 (80.12%), Postives = 279/327 (85.32%), Query Frame = 0


Query: 28  EPSKSVPVSVKTQKREILRISTRPIDLNRKYPSIFEEFLPGDIGIQPHVKLTSKVLELDA 87
           EPSKSVPVS+ TQKREILRI  RPIDL RKYPSIFEEFLPG IG+QPHVKLTSKVLELDA
Sbjct: 65  EPSKSVPVSIITQKREILRIPMRPIDLIRKYPSIFEEFLPGGIGVQPHVKLTSKVLELDA 124

Query: 88  -EQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVNVVDQLKWDLGLPKDYVQSIVPNFPDY 147
            EQL YQTSTCRQ AADRL+KLLMLSRV+KV V+++DQLKWDLGLPKD+VQSIVP FPDY
Sbjct: 125 EEQLTYQTSTCRQQAADRLLKLLMLSRVHKVPVSIIDQLKWDLGLPKDFVQSIVPEFPDY 184

Query: 148 FKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGF 207
           FKVVGHQNFASG GD RVLELVCWNNEL TSV+EKMAAKVK DT K MHITFPMKYSNGF
Sbjct: 185 FKVVGHQNFASGSGDMRVLELVCWNNELATSVLEKMAAKVKHDTSKRMHITFPMKYSNGF 244

Query: 208 EMD-KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENI 267
           EMD KFKKWVDEWQKLPYISPYENASHLSPN+DES+KWTVAILHELLHMLVTKKTEKENI
Sbjct: 245 EMDKKFKKWVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENI 304

Query: 268 LCI------------------GIFYISSKAGTYMVVLKEGYKRGSVVESNPLMNIRNKYL 327
           LCI                  GIFYISSKAGTY VVLKEGYKRGSVVESNPLMNIRNKYL
Sbjct: 305 LCIGEYFGLRSRFKRALLHHPGIFYISSKAGTYTVVLKEGYKRGSVVESNPLMNIRNKYL 364

Query: 328 YLMNIVEEDKQQASISVLANRSKNRKK 335
           +LMN VEED +  +  +   + K  +K
Sbjct: 365 HLMNTVEEDSKTTAKHISTRQQKQEQK 391

[Close]

BLAST of MELO3C008921 vs. ExPASy TrEMBL
Match: A0A5A7UN72 (Protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G00040 PE=4 SV=1)

HSP 1 Score: 508.8 bits (1309), Expect = 1.7e-140
Identity = 262/327 (80.12%), Postives = 279/327 (85.32%), Query Frame = 0


Query: 28  EPSKSVPVSVKTQKREILRISTRPIDLNRKYPSIFEEFLPGDIGIQPHVKLTSKVLELDA 87
           EPSKSVPVS+ TQKREILRI  RPIDL RKYPSIFEEFLPG IG+QPHVKLTSKVLELDA
Sbjct: 65  EPSKSVPVSIITQKREILRIPMRPIDLIRKYPSIFEEFLPGGIGVQPHVKLTSKVLELDA 124

Query: 88  -EQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVNVVDQLKWDLGLPKDYVQSIVPNFPDY 147
            EQL YQTSTCRQ AADRL+KLLMLSRV+KV V+++DQLKWDLGLPKD+VQSIVP FPDY
Sbjct: 125 EEQLTYQTSTCRQQAADRLLKLLMLSRVHKVPVSIIDQLKWDLGLPKDFVQSIVPEFPDY 184

Query: 148 FKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGF 207
           FKVVGHQNFASG GD RVLELVCWNNEL TSV+EKMAAKVK DT K MHITFPMKYSNGF
Sbjct: 185 FKVVGHQNFASGSGDMRVLELVCWNNELATSVLEKMAAKVKHDTSKRMHITFPMKYSNGF 244

Query: 208 EMD-KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENI 267
           EMD KFKKWVDEWQKLPYISPYENASHLSPN+DES+KWTVAILHELLHMLVTKKTEKENI
Sbjct: 245 EMDKKFKKWVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENI 304

Query: 268 LCI------------------GIFYISSKAGTYMVVLKEGYKRGSVVESNPLMNIRNKYL 327
           LCI                  GIFYISSKAGTY VVLKEGYKRGSVVESNPLMNIRNKYL
Sbjct: 305 LCIGEYFGLRSRFKRALLHHPGIFYISSKAGTYTVVLKEGYKRGSVVESNPLMNIRNKYL 364

Query: 328 YLMNIVEEDKQQASISVLANRSKNRKK 335
           +LMN VEED +  +  +   + K  +K
Sbjct: 365 HLMNTVEEDSKTTAKHISTRQQKQEQK 391

[Close]

BLAST of MELO3C008921 vs. ExPASy TrEMBL
Match: A0A0A0KRP2 (PORR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G420350 PE=4 SV=1)

HSP 1 Score: 508.1 bits (1307), Expect = 2.9e-140
Identity = 262/327 (80.12%), Postives = 280/327 (85.63%), Query Frame = 0


Query: 28  EPSKSVPVSVKTQKREILRISTRPIDLNRKYPSIFEEFLPGDIGIQPHVKLTSKVLELDA 87
           EPSKSVP+S+ TQKREILRI TRPIDL RKYPSIFEEFLPG IGIQPHVKLTSKVLELDA
Sbjct: 65  EPSKSVPLSIITQKREILRIPTRPIDLIRKYPSIFEEFLPGGIGIQPHVKLTSKVLELDA 124

Query: 88  -EQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVNVVDQLKWDLGLPKDYVQSIVPNFPDY 147
            EQL YQTSTCRQ AADRLVKLLMLSRV+KV V+++DQLKWDLGLPKDYV+SIVP+FPDY
Sbjct: 125 EEQLTYQTSTCRQQAADRLVKLLMLSRVHKVPVSIIDQLKWDLGLPKDYVESIVPDFPDY 184

Query: 148 FKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGF 207
           FKVVGHQNFASG GD RVLELVCWNNEL TSV+EKMA KVK D  KGM+ITFPMKYSNGF
Sbjct: 185 FKVVGHQNFASGSGDMRVLELVCWNNELATSVIEKMAVKVKPDKSKGMYITFPMKYSNGF 244

Query: 208 EMD-KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENI 267
           EMD KFKKWVDEWQKLPYISPYENASHLSPN+DES+KWTVAILHELLHMLVTKKTEKENI
Sbjct: 245 EMDKKFKKWVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENI 304

Query: 268 LCI------------------GIFYISSKAGTYMVVLKEGYKRGSVVESNPLMNIRNKYL 327
           LCI                  GIFYISSKAGTY VVLKEGYKRGSVVESNPLMNIRNKYL
Sbjct: 305 LCIGEYFGLRSRFKRALLHHPGIFYISSKAGTYTVVLKEGYKRGSVVESNPLMNIRNKYL 364

Query: 328 YLMNIVEEDKQQASISVLANRSKNRKK 335
           +LMN VEED +  +  +   + K  +K
Sbjct: 365 HLMNTVEEDSKTTTKHIDTRQQKQEQK 391

[Close]

BLAST of MELO3C008921 vs. TAIR 10
Match: AT1G71850.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 326.2 bits (835), Expect = 3.0e-89
Identity = 165/317 (52.05%), Postives = 226/317 (71.29%), Query Frame = 0


Query: 28  EPSKSVPVSVKTQKREILRISTRPIDLNRKYPSIFEEFLPGDIGIQPHVKLTSKVLELDA 87
           EP+KSVP+SV T +++ LR+  RPI+  R +PS+F+EFLPG IGI PH+ LT ++L  DA
Sbjct: 60  EPAKSVPISVITSQKDSLRVPLRPIEFIRSFPSVFQEFLPGGIGIHPHISLTPEILNHDA 119

Query: 88  -EQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVNVVDQLKWDLGLPKDYVQSIVPNFPDY 147
            EQL+Y + T +Q  ADRL+KLLM++R+NK+ + ++D LKWDLGLPKDYV+++VP FPDY
Sbjct: 120 DEQLVYGSETYKQGLADRLLKLLMINRINKIPLEILDLLKWDLGLPKDYVETMVPEFPDY 179

Query: 148 FKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTY-KGMHITFPMKYSNG 207
           F+V+     +   G +  LELVCW+NE   SV+EK A  ++   Y KG  I FPMK+SNG
Sbjct: 180 FRVIK----SKLRGCSGELELVCWSNEHAVSVLEKKARTLRKGEYTKGSAIAFPMKFSNG 239

Query: 208 FEMD-KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKEN 267
           F +D K KKW+D+WQKLPYISPYENA HLS  +DES+KW  A+LHE++++ V+KK EK+ 
Sbjct: 240 FVVDKKMKKWIDDWQKLPYISPYENALHLSATSDESDKWAAAVLHEIMNLFVSKKVEKDA 299

Query: 268 ILCI------------------GIFYISSKAGTYMVVLKEGYKRGSVVESNPLMNIRNKY 324
           IL +                  GIFY+SSK  T+ VVL++GYKRG ++ESN L+  RN+Y
Sbjct: 300 ILHLGEFMGLRSRFKRVLHNHPGIFYLSSKLRTHTVVLRDGYKRGMLIESNELVTSRNRY 359

[Close]

BLAST of MELO3C008921 vs. TAIR 10
Match: AT4G24320.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 204.5 bits (519), Expect = 1.3e-52
Identity = 119/330 (36.06%), Postives = 189/330 (57.27%), Query Frame = 0


Query: 26  IEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPSIFEEFLPGDIGIQPHVKLTSKVLEL 85
           +  PSKS+P+S  +  + ++ +        +KYPS+F  F P       HV+LT + L L
Sbjct: 52  VSSPSKSLPLSSLSLLKPLVNLHITAAAFFQKYPSVFTTFQPSP-SHPLHVRLTPQALTL 111

Query: 86  -DAEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVNVVDQLKWDLGLPKDYVQSIVPNFP 145
              E+ ++ +   R +   RL K LML+    + + V+D+ ++DLGLP+DY+ S++ ++P
Sbjct: 112 HKEEETIHLSPPQRNVTVQRLTKFLMLTGAGSLPLYVLDRFRFDLGLPRDYITSLIGDYP 171

Query: 146 DYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFD-TYKGMHITFPMKYS 205
           +YF+V   ++  +G   T  L +    N L  S +E+  A +      KG+ I + M + 
Sbjct: 172 EYFEVTEIKDRLTG-EKTLALTISSRRNNLPVSEMERREATIDGSRVKKGLRIRYSMNFP 231

Query: 206 NGFEMDK-FKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEK 265
            G+E+ K  K WV++WQ LPYISPYENA HL   +D++EKW VA+LHELL +LV+KKTE 
Sbjct: 232 KGYELHKRVKNWVEQWQNLPYISPYENAFHLGSYSDQAEKWAVAVLHELLFLLVSKKTET 291

Query: 266 ENILCI------------------GIFYISSKAGTYMVVLKEGYKRGSVVESNPLMNIRN 325
           +N++C+                  GIFY+S K  T  VVL+E Y +  ++E +PLM IR+
Sbjct: 292 DNVICLGEYLGFGMRFKKALVHHPGIFYMSHKIRTQTVVLREAYHKVFLLEKHPLMGIRH 351

Query: 326 KYLYLMNIVEEDKQQASISVLANRSKNRKK 335
           +Y+YLM+     K++  +  +     NRKK
Sbjct: 352 QYIYLMSKSGRGKKRDYVHGV--ERSNRKK 377

[Close]

BLAST of MELO3C008921 vs. TAIR 10
Match: AT2G39120.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 164.9 bits (416), Expect = 1.1e-40
Identity = 105/306 (34.31%), Postives = 169/306 (55.23%), Query Frame = 0


Query: 26  IEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPSIFEEFLPGDIGIQPHVKLTSKVLEL 85
           ++EP++ +P+S  ++K     +ST+     RK+PSIFEEF+  +  + P  +LT +  EL
Sbjct: 60  VQEPNRCIPISAISKKTRQFDVSTKIAHFLRKFPSIFEEFVGPEYNL-PWFRLTPEATEL 119

Query: 86  D-AEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVNVVDQLKWDLGLPKDYVQSIVPNFP 145
           D  E+++YQTS       DRL KL+++S+ N + +++V  +KW LGLP DY+Q    N  
Sbjct: 120 DRQERVVYQTSA--DDLRDRLKKLILMSKDNVLPLSIVQGMKWYLGLPDDYLQFPDMNLD 179

Query: 146 DYFKVVGHQNFASGLGDTRVLELVCWN-NELTTSVVEKMAAKVKFDTYKGMHITFPMKYS 205
             F+ V  ++   GL        V +N  +   SV++K A K +        I FP+  S
Sbjct: 180 SSFRFVDMEDGVKGLA-------VDYNGGDKVLSVLQKNAMKKRRGEVSLEEIEFPLFPS 239

Query: 206 NGFEMD-KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEK 265
            G  +  K + W+ E+QKLPY+SPY++ S L P++D +EK  V  LHELL + V    E+
Sbjct: 240 KGCRLRVKIEDWLMEFQKLPYVSPYDDYSCLDPSSDIAEKRVVGFLHELLCLFVEHSAER 299

Query: 266 ENILCI------------------GIFYISSKAGTYMVVLKEGYKRGSVVESNPLMNIRN 311
           + +LC+                   IFY+S K  T   +L+E Y+  + VE++P++ +R 
Sbjct: 300 KKLLCLKKHFGLPQKVHKAFERHPQIFYLSMKNKTCTAILREPYRDKASVETHPVLGVRK 355

[Close]

BLAST of MELO3C008921 vs. TAIR 10
Match: AT3G58520.2 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 163.7 bits (413), Expect = 2.6e-40
Identity = 98/285 (34.39%), Postives = 158/285 (55.44%), Query Frame = 0


Query: 55  NRKYPSIFEEFLPGDIGIQPHVKLTSKVLELDA-EQLMYQTSTCRQLAADRLVKLLMLSR 114
           N++YP++F EF        P  KLT   L LD+ E++++Q+        +RL ++LM+ R
Sbjct: 79  NKRYPTLFHEFPHARYASLPCFKLTDTALMLDSQEEIIHQSHEAD--TVERLCRVLMMMR 138

Query: 115 VNKVTVNVVDQLKWDLGLPKDYVQSIVPNFPDYFKVVGHQNFASGLGDTRVLELVCWNNE 174
              V++  +  LK+DLGLP +Y +++V  +PD+F  V   N          L+LV W +E
Sbjct: 139 SKTVSLRSLHSLKFDLGLPDNYEKTLVMKYPDHFCFVKASN------GNPCLKLVKWRDE 198

Query: 175 LTTSVVEK-------MAAKVKFDTYK--GMHITFPMKYSNGF-EMDKFKKWVDEWQKLPY 234
              S ++K          + ++  +K     +TFPM +  G+    K K W+DE+QKLPY
Sbjct: 199 FAFSALQKRNEDNDVSGEESRYREFKRGQSTLTFPMSFPRGYGAQKKVKAWMDEFQKLPY 258

Query: 235 ISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCI--------------- 294
           ISPY++ S++ P +D  EK  VA+LHELL + + KKT++  +  +               
Sbjct: 259 ISPYDDPSNIDPESDLMEKRAVAVLHELLSLTIHKKTKRNYLRSMRAELNIPHKFTRLFT 318

Query: 295 ---GIFYISSKAGTYMVVLKEGYKRGSVVESNPLMNIRNKYLYLM 311
              GIFY+S K  T  V+LKEGY+RG +V+ +PL  +R+K+ ++M
Sbjct: 319 RYPGIFYLSLKCKTTTVILKEGYRRGKLVDPHPLTRLRDKFYHVM 355

[Close]

BLAST of MELO3C008921 vs. TAIR 10
Match: AT3G58520.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 162.9 bits (411), Expect = 4.4e-40
Identity = 103/319 (32.29%), Postives = 171/319 (53.61%), Query Frame = 0


Query: 26  IEEPSKSVPVSVKTQK-----REILRISTRPIDLNRKYPSIFEEFLPGDIGIQPHVKLTS 85
           +++  K  P    T K     +++L ++   +   R+YP++F EF        P  KLT 
Sbjct: 57  LKDAIKRSPTGFLTAKSVADWQKLLGLTVPVLRFLRRYPTLFHEFPHARYASLPCFKLTD 116

Query: 86  KVLELDA-EQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVNVVDQLKWDLGLPKDYVQSI 145
             L LD+ E++++Q+        +RL ++LM+ R   V++  +  LK+DLGLP +Y +++
Sbjct: 117 TALMLDSQEEIIHQSHEAD--TVERLCRVLMMMRSKTVSLRSLHSLKFDLGLPDNYEKTL 176

Query: 146 VPNFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEK-------MAAKVKFDTYK 205
           V  +PD+F  V   N          L+LV W +E   S ++K          + ++  +K
Sbjct: 177 VMKYPDHFCFVKASN------GNPCLKLVKWRDEFAFSALQKRNEDNDVSGEESRYREFK 236

Query: 206 --GMHITFPMKYSNGF-EMDKFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILH 265
                +TFPM +  G+    K K W+DE+QKLPYISPY++ S++ P +D  EK  VA+LH
Sbjct: 237 RGQSTLTFPMSFPRGYGAQKKVKAWMDEFQKLPYISPYDDPSNIDPESDLMEKRAVAVLH 296

Query: 266 ELLHMLVTKKTEKENILCI------------------GIFYISSKAGTYMVVLKEGYKRG 311
           ELL + + KKT++  +  +                  GIFY+S K  T  V+LKEGY+RG
Sbjct: 297 ELLSLTIHKKTKRNYLRSMRAELNIPHKFTRLFTRYPGIFYLSLKCKTTTVILKEGYRRG 356

The following BLAST results are available for this feature:

BLAST of MELO3C008921 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK05469.1	8.2e-174	94.91	protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucumis melo var. makuwa]	[more]
KAA0034927.1	5.0e-171	93.41	protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucumis melo var. makuwa]	[more]
TYK12080.1	3.5e-140	80.12	protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucumis melo var. makuwa]	[more]
KAA0056510.1	3.5e-140	80.12	protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_031741647.1	5.9e-140	80.12	protein WHAT'S THIS FACTOR 9, mitochondrial, partial [Cucumis sativus]	[more]

BLAST of MELO3C008921 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZUZ6	1.6e-39	34.31	Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=W...	[more]
B6TTV8	6.8e-22	26.99	Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=...	[more]
Q65XL5	7.5e-21	26.99	Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japon...	[more]
A0MFS5	2.4e-19	25.51	Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
Q689D6	6.0e-18	27.62	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1...	[more]

BLAST of MELO3C008921 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C507	4.0e-174	94.91	Protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A5A7T026	2.4e-171	93.41	Protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A5D3CKY8	1.7e-140	80.12	Protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A5A7UN72	1.7e-140	80.12	Protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A0A0KRP2	2.9e-140	80.12	PORR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G420350 PE=4 S...	[more]

BLAST of MELO3C008921 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G71850.1	3.0e-89	52.05	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT4G24320.1	1.3e-52	36.06	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT2G39120.1	1.1e-40	34.31	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT3G58520.2	2.6e-40	34.39	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT3G58520.1	4.4e-40	32.29	Ubiquitin carboxyl-terminal hydrolase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021099	Plant organelle RNA recognition domain	PFAM	PF11955	PORR	coord: 27..268 e-value: 8.1E-70 score: 235.3 coord: 269..312 e-value: 8.6E-13 score: 47.9
None	No IPR available	PANTHER	PTHR31476:SF16	F14O23.23 PROTEIN	coord: 27..324
IPR045040	PORR family	PANTHER	PTHR31476	PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC	coord: 27..324

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008921.1	MELO3C008921.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding