MELO3C008859 (gene) Melon (DHL92) v4

Overview
NameMELO3C008859
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionTy3/gypsy retrotransposon protein
Locationchr08: 24010294 .. 24010944 (+)
RNA-Seq ExpressionMELO3C008859
SyntenyMELO3C008859
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAAAGTGTTCTAAGAGATGCTTTTGTAACTAGTTTGGAACCTGCCCTTCAAGCTGAAGTTATTAATAGACACCCACAAACCTTGGAGGAATGTATGAAAGAAGCACAACTAGTAAACGACCCTAACTTAGCTTTGAAGCTTGCGAGAGAAGAGTTGGGGTTGCTGGAACCAAAGAGTAGGGAAGACATTGGCAGTAAAAGCAAATAAGGGAATGAGAAAGAGCCTCACAAGAAAACCAAATTTCAAATGAAGCAAGTAACTATCCCAATCAAGGGCATGTATCAAAAGAATGAACCACCAATAAAAAGACTCTCGGTTGCTGAATTTTGTGCTAGGCTAGACAAAGGGTTATGTTTTAGATGCAATGAGAAATACTCCCACGACCATAAGTGCAAGGTTAAGGAGAAGAGGGAACTAATGCTTTTCCTTCTAAATGAGGAAGAGGGCACATCAAAGGAAAATAGTGGAGAAATAGTTGAGTTAAAACATTTAGACATTGCTGAAGGGTTTGAGCTCAAAACGATCATGGACCTCTCATCTAAGGGCACCGTGAGGTTGAAAGTGGTGTTGATGGATAATGAAGTGGTGGTGCTTAGGGGTGTTCGTGGTTTGGTTCGGTTTGTTTTGAAGCTAAACCCGCACTAA

mRNA sequence

ATGGCTGAAAGTGTTCTAAGAGATGCTTTTGTAACTAGTTTGGAACCTGCCCTTCAAGCTGAAGTTATTAATAGACACCCACAAACCTTGGAGGAATGTATGAAAGAAGCACAACTAGTAAACGACCCTAACTTAGCTTTGAAGCTTGCGAGAGAAGAGTTGGGGTTGCTGGAACCAAAGAGTAGGGAAGACATTGGCAACAAAGGGTTATGTTTTAGATGCAATGAGAAATACTCCCACGACCATAAGTGCAAGGTTAAGGAGAAGAGGGAACTAATGCTTTTCCTTCTAAATGAGGAAGAGGGCACATCAAAGGAAAATAGTGGAGAAATAGTTGAGTTAAAACATTTAGACATTGCTGAAGGGTTTGAGCTCAAAACGATCATGGACCTCTCATCTAAGGGCACCGTGAGGTTGAAAGTGGTGTTGATGGATAATGAAGTGGTGGTGCTTAGGGGTGTTCGTGGTTTGGTTCGGTTTGTTTTGAAGCTAAACCCGCACTAA

Coding sequence (CDS)

ATGGCTGAAAGTGTTCTAAGAGATGCTTTTGTAACTAGTTTGGAACCTGCCCTTCAAGCTGAAGTTATTAATAGACACCCACAAACCTTGGAGGAATGTATGAAAGAAGCACAACTAGTAAACGACCCTAACTTAGCTTTGAAGCTTGCGAGAGAAGAGTTGGGGTTGCTGGAACCAAAGAGTAGGGAAGACATTGGCAACAAAGGGTTATGTTTTAGATGCAATGAGAAATACTCCCACGACCATAAGTGCAAGGTTAAGGAGAAGAGGGAACTAATGCTTTTCCTTCTAAATGAGGAAGAGGGCACATCAAAGGAAAATAGTGGAGAAATAGTTGAGTTAAAACATTTAGACATTGCTGAAGGGTTTGAGCTCAAAACGATCATGGACCTCTCATCTAAGGGCACCGTGAGGTTGAAAGTGGTGTTGATGGATAATGAAGTGGTGGTGCTTAGGGGTGTTCGTGGTTTGGTTCGGTTTGTTTTGAAGCTAAACCCGCACTAA

Protein sequence

MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPKSREDIGNKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEEGTSKENSGEIVELKHLDIAEGFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFVLKLNPH
Homology
[Close]
BLAST of MELO3C008859 vs. NCBI nr
Match: KAA0041824.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 199.1 bits (505), Expect = 2.9e-47
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0 

Query: 67  NKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEEGTSKENSGEIVELKHLDIAEGFELK 126
           +KGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEEGTSKENSGEIVELKHLDIAEGFELK
Sbjct: 32  DKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEEGTSKENSGEIVELKHLDIAEGFELK 91

Query: 127 TIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFVLKLNPH 168
           TIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFVLKLNPH
Sbjct: 92  TIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFVLKLNPH 132

[Close]
BLAST of MELO3C008859 vs. NCBI nr
Match: TYK05346.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 193.0 bits (489), Expect = 2.1e-45
Identity = 100/106 (94.34%), Postives = 101/106 (95.28%), Query Frame = 0 

Query: 67  NKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNE-----EEGTSKENSGEIVELKHLDIAE 126
           +KGLCFRCNEKYSHDHKCKVKEKRELMLFLLNE     EEGTSKENSGEIVELKHLDIAE
Sbjct: 32  DKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAE 91

Query: 127 GFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFVLKLNPH 168
           GFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFVLKLNPH
Sbjct: 92  GFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFVLKLNPH 137

[Close]
BLAST of MELO3C008859 vs. NCBI nr
Match: TYK30161.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 181.0 bits (458), Expect = 8.3e-42
Identity = 118/214 (55.14%), Postives = 131/214 (61.21%), Query Frame = 0 

Query: 1   MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPK 60
           MAESVLRDAFVTSLE ALQAEVI+RHPQTLE+CMKEAQLVND NL LKLAREELGLLE K
Sbjct: 141 MAESVLRDAFVTSLELALQAEVISRHPQTLEQCMKEAQLVNDCNLTLKLAREELGLLEHK 200

Query: 61  SREDI------GN-------------------------------------------KGLC 120
           S E        GN                                           KGL 
Sbjct: 201 SGEGTRSKSNGGNDKEAHKKTEFQMKQVTIPIKGSYQKNEPPIKRLSDAEFCARLDKGLY 260

Query: 121 FRCNEKYSHDHKCKVKEKRELMLFLLNEEEGTSKENSGEIVELKHLDIAEG--FELKTIM 164
           FRCNEKYSH H+CKVKEKRELMLF+LNEEE   +EN  E+V LK L++AEG   ELK IM
Sbjct: 261 FRCNEKYSHGHRCKVKEKRELMLFILNEEEDPPEENREELVRLKQLELAEGAKIELKIIM 320

[Close]
BLAST of MELO3C008859 vs. NCBI nr
Match: KAA0057464.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 181.0 bits (458), Expect = 8.3e-42
Identity = 118/214 (55.14%), Postives = 131/214 (61.21%), Query Frame = 0 

Query: 1   MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPK 60
           MAESVLRDAFVTSLE ALQAEVI+RHPQTLE+CMKEAQLVND NL LKLAREELGLLE K
Sbjct: 289 MAESVLRDAFVTSLELALQAEVISRHPQTLEQCMKEAQLVNDCNLTLKLAREELGLLEHK 348

Query: 61  SREDI------GN-------------------------------------------KGLC 120
           S E        GN                                           KGL 
Sbjct: 349 SGEGTRSKSNGGNDKEAHKKTEFQMKQVTIPIKGSYQKNEPPIKRLSDAEFCARLDKGLY 408

Query: 121 FRCNEKYSHDHKCKVKEKRELMLFLLNEEEGTSKENSGEIVELKHLDIAEG--FELKTIM 164
           FRCNEKYSH H+CKVKEKRELMLF+LNEEE   +EN  E+V LK L++AEG   ELK IM
Sbjct: 409 FRCNEKYSHGHRCKVKEKRELMLFILNEEEDPPEENREELVRLKQLELAEGAKIELKIIM 468

[Close]
BLAST of MELO3C008859 vs. NCBI nr
Match: XP_016900785.1 (PREDICTED: uncharacterized protein LOC107991020 [Cucumis melo])

HSP 1 Score: 181.0 bits (458), Expect = 8.3e-42
Identity = 118/214 (55.14%), Postives = 131/214 (61.21%), Query Frame = 0 

Query: 1   MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPK 60
           MAESVLRDAFVTSLE ALQAEVI+RHPQTLE+CMKEAQLVND NL LKLAREELGLLE K
Sbjct: 43  MAESVLRDAFVTSLELALQAEVISRHPQTLEQCMKEAQLVNDCNLTLKLAREELGLLEHK 102

Query: 61  SREDI------GN-------------------------------------------KGLC 120
           S E        GN                                           KGL 
Sbjct: 103 SGEGTRSKSNGGNDKEAHKKTEFQMKQVTIPIKGSYQKNEPPIKRLSDAEFCARLDKGLY 162

Query: 121 FRCNEKYSHDHKCKVKEKRELMLFLLNEEEGTSKENSGEIVELKHLDIAEG--FELKTIM 164
           FRCNEKYSH H+CKVKEKRELMLF+LNEEE   +EN  E+V LK L++AEG   ELK IM
Sbjct: 163 FRCNEKYSHGHRCKVKEKRELMLFILNEEEDPPEENREELVRLKQLELAEGAKIELKIIM 222

[Close]
BLAST of MELO3C008859 vs. ExPASy TrEMBL
Match: A0A5A7TEG2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G002020 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.4e-47
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0 

Query: 67  NKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEEGTSKENSGEIVELKHLDIAEGFELK 126
           +KGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEEGTSKENSGEIVELKHLDIAEGFELK
Sbjct: 32  DKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEEGTSKENSGEIVELKHLDIAEGFELK 91

Query: 127 TIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFVLKLNPH 168
           TIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFVLKLNPH
Sbjct: 92  TIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFVLKLNPH 132

[Close]
BLAST of MELO3C008859 vs. ExPASy TrEMBL
Match: A0A5D3C4Q7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G00130 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.0e-45
Identity = 100/106 (94.34%), Postives = 101/106 (95.28%), Query Frame = 0 

Query: 67  NKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNE-----EEGTSKENSGEIVELKHLDIAE 126
           +KGLCFRCNEKYSHDHKCKVKEKRELMLFLLNE     EEGTSKENSGEIVELKHLDIAE
Sbjct: 32  DKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAE 91

Query: 127 GFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFVLKLNPH 168
           GFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFVLKLNPH
Sbjct: 92  GFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFVLKLNPH 137

[Close]
BLAST of MELO3C008859 vs. ExPASy TrEMBL
Match: A0A5D3E3K6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001480 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 4.0e-42
Identity = 118/214 (55.14%), Postives = 131/214 (61.21%), Query Frame = 0 

Query: 1   MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPK 60
           MAESVLRDAFVTSLE ALQAEVI+RHPQTLE+CMKEAQLVND NL LKLAREELGLLE K
Sbjct: 141 MAESVLRDAFVTSLELALQAEVISRHPQTLEQCMKEAQLVNDCNLTLKLAREELGLLEHK 200

Query: 61  SREDI------GN-------------------------------------------KGLC 120
           S E        GN                                           KGL 
Sbjct: 201 SGEGTRSKSNGGNDKEAHKKTEFQMKQVTIPIKGSYQKNEPPIKRLSDAEFCARLDKGLY 260

Query: 121 FRCNEKYSHDHKCKVKEKRELMLFLLNEEEGTSKENSGEIVELKHLDIAEG--FELKTIM 164
           FRCNEKYSH H+CKVKEKRELMLF+LNEEE   +EN  E+V LK L++AEG   ELK IM
Sbjct: 261 FRCNEKYSHGHRCKVKEKRELMLFILNEEEDPPEENREELVRLKQLELAEGAKIELKIIM 320

[Close]
BLAST of MELO3C008859 vs. ExPASy TrEMBL
Match: A0A5A7UQT2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003450 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 4.0e-42
Identity = 118/214 (55.14%), Postives = 131/214 (61.21%), Query Frame = 0 

Query: 1   MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPK 60
           MAESVLRDAFVTSLE ALQAEVI+RHPQTLE+CMKEAQLVND NL LKLAREELGLLE K
Sbjct: 289 MAESVLRDAFVTSLELALQAEVISRHPQTLEQCMKEAQLVNDCNLTLKLAREELGLLEHK 348

Query: 61  SREDI------GN-------------------------------------------KGLC 120
           S E        GN                                           KGL 
Sbjct: 349 SGEGTRSKSNGGNDKEAHKKTEFQMKQVTIPIKGSYQKNEPPIKRLSDAEFCARLDKGLY 408

Query: 121 FRCNEKYSHDHKCKVKEKRELMLFLLNEEEGTSKENSGEIVELKHLDIAEG--FELKTIM 164
           FRCNEKYSH H+CKVKEKRELMLF+LNEEE   +EN  E+V LK L++AEG   ELK IM
Sbjct: 409 FRCNEKYSHGHRCKVKEKRELMLFILNEEEDPPEENREELVRLKQLELAEGAKIELKIIM 468

[Close]
BLAST of MELO3C008859 vs. ExPASy TrEMBL
Match: A0A1S4DYI9 (uncharacterized protein LOC107991020 OS=Cucumis melo OX=3656 GN=LOC107991020 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 4.0e-42
Identity = 118/214 (55.14%), Postives = 131/214 (61.21%), Query Frame = 0 

Query: 1   MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPK 60
           MAESVLRDAFVTSLE ALQAEVI+RHPQTLE+CMKEAQLVND NL LKLAREELGLLE K
Sbjct: 43  MAESVLRDAFVTSLELALQAEVISRHPQTLEQCMKEAQLVNDCNLTLKLAREELGLLEHK 102

Query: 61  SREDI------GN-------------------------------------------KGLC 120
           S E        GN                                           KGL 
Sbjct: 103 SGEGTRSKSNGGNDKEAHKKTEFQMKQVTIPIKGSYQKNEPPIKRLSDAEFCARLDKGLY 162

Query: 121 FRCNEKYSHDHKCKVKEKRELMLFLLNEEEGTSKENSGEIVELKHLDIAEG--FELKTIM 164
           FRCNEKYSH H+CKVKEKRELMLF+LNEEE   +EN  E+V LK L++AEG   ELK IM
Sbjct: 163 FRCNEKYSHGHRCKVKEKRELMLFILNEEEDPPEENREELVRLKQLELAEGAKIELKIIM 222

The following BLAST results are available for this feature:
BLAST of MELO3C008859 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0041824.12.9e-4799.01retrotransposon protein [Cucumis melo var. makuwa][more]
TYK05346.12.1e-4594.34retrotransposon protein [Cucumis melo var. makuwa][more]
TYK30161.18.3e-4255.14retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0057464.18.3e-4255.14retrotransposon protein [Cucumis melo var. makuwa][more]
XP_016900785.18.3e-4255.14PREDICTED: uncharacterized protein LOC107991020 [Cucumis melo][more]
BLAST of MELO3C008859 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C008859 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TEG21.4e-4799.01Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3C4Q71.0e-4594.34Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E3K64.0e-4255.14Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UQT24.0e-4255.14Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S4DYI94.0e-4255.14uncharacterized protein LOC107991020 OS=Cucumis melo OX=3656 GN=LOC107991020 PE=... [more]
BLAST of MELO3C008859 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008859.1MELO3C008859.1mRNA