MELO3C008843 (gene) Melon (DHL92) v4

Overview


Name	MELO3C008843
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotrans_gag domain-containing protein
Location	chr08: 24406424 .. 24406720 (+)
RNA-Seq Expression	MELO3C008843
Synteny	MELO3C008843

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACCACGAGGAAGGTCGAGACAAGTCAGGCAAGTAGCAACAGATGTTCCAACAACCAGGAGCTTTAATGAAGCGCAAGCATCAGACGAAGTGTCAAGTAACCCACACGGTTCGGTGGGAAAAAGGCATAAGGAAGGGATGGTGGATCGCCTCCTTCAGAAGATAGATAAAAGGTTTAGCATCGAGAGGCTAAAAGCATTGGGGGCAGCAACCTTTCAAGAATCACTAATCCGGCTGATGAGAAAAGTGGTTAAGTTTGATAGAAAAGTGCTTTGGGGTGATGGACTGCACTGA

mRNA sequence

ATGGCACCACGAGGAAGGTCGAGACAAGTCAGGCAAGTAGCAACAGATGTTCCAACAACCAGGAGCTTTAATGAAGCGCAAGCATCAGACGAAGTGTCAAGTAACCCACACGGTTCGGTGGGAAAAAGGCATAAGGAAGGGATGGTGGATCGCCTCCTTCAGAAGATAGATAAAAGGTTTAGCATCGAGAGGCTAAAAGCATTGGGGGCAGCAACCTTTCAAGAATCACTAATCCGGCTGATGAGAAAAGTGGTTAAGTTTGATAGAAAAGTGCTTTGGGGTGATGGACTGCACTGA

Coding sequence (CDS)

ATGGCACCACGAGGAAGGTCGAGACAAGTCAGGCAAGTAGCAACAGATGTTCCAACAACCAGGAGCTTTAATGAAGCGCAAGCATCAGACGAAGTGTCAAGTAACCCACACGGTTCGGTGGGAAAAAGGCATAAGGAAGGGATGGTGGATCGCCTCCTTCAGAAGATAGATAAAAGGTTTAGCATCGAGAGGCTAAAAGCATTGGGGGCAGCAACCTTTCAAGAATCACTAATCCGGCTGATGAGAAAAGTGGTTAAGTTTGATAGAAAAGTGCTTTGGGGTGATGGACTGCACTGA

Protein sequence

MAPRGRSRQVRQVATDVPTTRSFNEAQASDEVSSNPHGSVGKRHKEGMVDRLLQKIDKRFSIERLKALGAATFQESLIRLMRKVVKFDRKVLWGDGLH

Homology

[Close]

BLAST of MELO3C008843 vs. NCBI nr
Match: KAA0041782.1 (uncharacterized protein E6C27_scaffold67G001450 [Cucumis melo var. makuwa] >TYK27071.1 uncharacterized protein E5676_scaffold95G00720 [Cucumis melo var. makuwa])

HSP 1 Score: 175.3 bits (443), Expect = 2.7e-40
Identity = 90/94 (95.74%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1  MAPRGRSRQVRQVATDVPTTRSFNEAQASDEVSSNPHGSVGKRHKEGMVDRLLQKIDKRF 60
          MAPRGRSRQVRQV  DVPTTRSFNEAQASDEVSSNPHGSVGKRHKEGMVDRLLQKIDKRF
Sbjct: 1  MAPRGRSRQVRQVTRDVPTTRSFNEAQASDEVSSNPHGSVGKRHKEGMVDRLLQKIDKRF 60

Query: 61 SIERLKALGAATFQESLIRLMRKVVKFDRKVLWG 95
          SIERLKALGA TFQESLIRLMRKVVKFDRKV WG
Sbjct: 61 SIERLKALGAETFQESLIRLMRKVVKFDRKVFWG 94

[Close]

BLAST of MELO3C008843 vs. NCBI nr
Match: TYK29193.1 (uncharacterized protein E5676_scaffold880G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 2.8e-13
Identity = 46/66 (69.70%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 1  MAPRGRSRQVRQVATDVPTTRSFNEAQASDEVSSNPHGSVGKRHKEGMVDRLLQKIDKRF 60
          M PRGR RQVRQVATDVP TRS N AQA  E+SSNPH  VG+  +EGM D   QK+DKRF
Sbjct: 1  MVPRGRPRQVRQVATDVPATRSINRAQAFGEMSSNPHELVGRGAEEGMFDCFPQKLDKRF 60

Query: 61 SIERLK 67
          SIER K
Sbjct: 61 SIERNK 66

[Close]

BLAST of MELO3C008843 vs. NCBI nr
Match: KAA0046177.1 (uncharacterized protein E6C27_scaffold376G00360 [Cucumis melo var. makuwa] >TYK00206.1 uncharacterized protein E5676_scaffold1333G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 2.0e-11
Identity = 44/73 (60.27%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 1  MAPRGRSRQVRQVATDVPTTRSFNEAQASDEVSSNPHGSVGKRHKEGMVDRLLQKIDKRF 60
          M PRGRSR+VR++ATDVP   S N  QAS+E+SSN +  VG+R  EGM  RL  K+DKRF
Sbjct: 1  MEPRGRSRRVRKLATDVPAIESINREQASNEISSNLYYLVGRRAGEGMNYRLPLKLDKRF 60

Query: 61 SIERLKALGAATF 74
           I+RLKAL   TF
Sbjct: 61 GIKRLKALWVMTF 73

[Close]

BLAST of MELO3C008843 vs. NCBI nr
Match: KAA0047014.1 (hypothetical protein E6C27_scaffold230G002160 [Cucumis melo var. makuwa] >TYK04769.1 hypothetical protein E5676_scaffold68G00730 [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 4.2e-09
Identity = 44/84 (52.38%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 5   GRSRQV---RQVATDVPTTRSFNEAQASDEVSSNPHGSVGKRHKEGMVDRLLQK------ 64
           G SR+V   RQVA  VP TR  N AQAS ++SSNPH SV +  +E M DR  Q+      
Sbjct: 22  GASRKVRRGRQVAISVPVTRKANRAQASGKISSNPHDSVRQNVEESMFDRFAQRLTDHFM 81

Query: 65  -----IDKRFSIERLKALGAATFQ 75
                +DKRF IERLKALGA TF+
Sbjct: 82  PIPSTVDKRFGIERLKALGAMTFE 105

[Close]

BLAST of MELO3C008843 vs. NCBI nr
Match: KAA0039561.1 (hypothetical protein E6C27_scaffold744G00310 [Cucumis melo var. makuwa] >TYK01739.1 hypothetical protein E5676_scaffold775G00680 [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 2.7e-08
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 1  MAPRGRSRQVRQVATDVPTTRSFNEAQASDEVSSNPHGSVGKRHKEGMVDRLLQK----- 60
          MAPR R R  RQV   VP T S N+ Q S+E+S+NP+  + +  ++ M DR  Q+     
Sbjct: 1  MAPRERVRICRQVTIGVPATESANKVQESNEISNNPYDPIKQNTEKSMFDRFGQRLVDHF 60

Query: 61 ------IDKRFSIERLKALGAATFQES 77
                +DKRF+IERL+ALGA TF+E+
Sbjct: 61 MPTPFIVDKRFNIERLRALGATTFEET 87

[Close]

BLAST of MELO3C008843 vs. ExPASy TrEMBL
Match: A0A5D3DTR2 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00720 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.3e-40
Identity = 90/94 (95.74%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1  MAPRGRSRQVRQVATDVPTTRSFNEAQASDEVSSNPHGSVGKRHKEGMVDRLLQKIDKRF 60
          MAPRGRSRQVRQV  DVPTTRSFNEAQASDEVSSNPHGSVGKRHKEGMVDRLLQKIDKRF
Sbjct: 1  MAPRGRSRQVRQVTRDVPTTRSFNEAQASDEVSSNPHGSVGKRHKEGMVDRLLQKIDKRF 60

Query: 61 SIERLKALGAATFQESLIRLMRKVVKFDRKVLWG 95
          SIERLKALGA TFQESLIRLMRKVVKFDRKV WG
Sbjct: 61 SIERLKALGAETFQESLIRLMRKVVKFDRKVFWG 94

[Close]

BLAST of MELO3C008843 vs. ExPASy TrEMBL
Match: A0A5D3DZK7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold880G00030 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-13
Identity = 46/66 (69.70%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 1  MAPRGRSRQVRQVATDVPTTRSFNEAQASDEVSSNPHGSVGKRHKEGMVDRLLQKIDKRF 60
          M PRGR RQVRQVATDVP TRS N AQA  E+SSNPH  VG+  +EGM D   QK+DKRF
Sbjct: 1  MVPRGRPRQVRQVATDVPATRSINRAQAFGEMSSNPHELVGRGAEEGMFDCFPQKLDKRF 60

Query: 61 SIERLK 67
          SIER K
Sbjct: 61 SIERNK 66

[Close]

BLAST of MELO3C008843 vs. ExPASy TrEMBL
Match: A0A5A7TWA5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1333G00270 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 9.7e-12
Identity = 44/73 (60.27%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 1  MAPRGRSRQVRQVATDVPTTRSFNEAQASDEVSSNPHGSVGKRHKEGMVDRLLQKIDKRF 60
          M PRGRSR+VR++ATDVP   S N  QAS+E+SSN +  VG+R  EGM  RL  K+DKRF
Sbjct: 1  MEPRGRSRRVRKLATDVPAIESINREQASNEISSNLYYLVGRRAGEGMNYRLPLKLDKRF 60

Query: 61 SIERLKALGAATF 74
           I+RLKAL   TF
Sbjct: 61 GIKRLKALWVMTF 73

[Close]

BLAST of MELO3C008843 vs. ExPASy TrEMBL
Match: A0A5A7TVM1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00730 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.0e-09
Identity = 44/84 (52.38%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 5   GRSRQV---RQVATDVPTTRSFNEAQASDEVSSNPHGSVGKRHKEGMVDRLLQK------ 64
           G SR+V   RQVA  VP TR  N AQAS ++SSNPH SV +  +E M DR  Q+      
Sbjct: 22  GASRKVRRGRQVAISVPVTRKANRAQASGKISSNPHDSVRQNVEESMFDRFAQRLTDHFM 81

Query: 65  -----IDKRFSIERLKALGAATFQ 75
                +DKRF IERLKALGA TF+
Sbjct: 82  PIPSTVDKRFGIERLKALGAMTFE 105

[Close]

BLAST of MELO3C008843 vs. ExPASy TrEMBL
Match: A0A5D3BUF6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00680 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 1  MAPRGRSRQVRQVATDVPTTRSFNEAQASDEVSSNPHGSVGKRHKEGMVDRLLQK----- 60
          MAPR R R  RQV   VP T S N+ Q S+E+S+NP+  + +  ++ M DR  Q+     
Sbjct: 1  MAPRERVRICRQVTIGVPATESANKVQESNEISNNPYDPIKQNTEKSMFDRFGQRLVDHF 60

Query: 61 ------IDKRFSIERLKALGAATFQES 77
                +DKRF+IERL+ALGA TF+E+
Sbjct: 61 MPTPFIVDKRFNIERLRALGATTFEET 87

The following BLAST results are available for this feature:

BLAST of MELO3C008843 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041782.1	2.7e-40	95.74	uncharacterized protein E6C27_scaffold67G001450 [Cucumis melo var. makuwa] >TYK2...	[more]
TYK29193.1	2.8e-13	69.70	uncharacterized protein E5676_scaffold880G00030 [Cucumis melo var. makuwa]	[more]
KAA0046177.1	2.0e-11	60.27	uncharacterized protein E6C27_scaffold376G00360 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0047014.1	4.2e-09	52.38	hypothetical protein E6C27_scaffold230G002160 [Cucumis melo var. makuwa] >TYK047...	[more]
KAA0039561.1	2.7e-08	44.83	hypothetical protein E6C27_scaffold744G00310 [Cucumis melo var. makuwa] >TYK0173...	[more]

BLAST of MELO3C008843 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C008843 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DTR2	1.3e-40	95.74	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3DZK7	1.3e-13	69.70	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TWA5	9.7e-12	60.27	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TVM1	2.0e-09	52.38	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BUF6	1.3e-08	44.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C008843 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008843.1	MELO3C008843.1	mRNA