MELO3C008728 (gene) Melon (DHL92) v4

Overview


Name	MELO3C008728
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon gag protein
Location	chr05: 18363087 .. 18363338 (-)
RNA-Seq Expression	MELO3C008728
Synteny	MELO3C008728

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTACCTGATGATGATGAGCCCCTACCTAATCAAGGGGATGTTGAGTTATCCCAAGATGACTTCGAAGATTCTTTTTGCGATCCTCCAACCTCATCTAAAAAAGATGCGACCTTAGTCCTTGTTAGGTCGCCAACCAAAAAGGTCTTGGAGGAGATTACTGATGACTCATTCCTTAAAGGAAATCAAATCGCCTCTGAGGTAGCAGGCAAGACACGTGCTCCTTTGCCACCTAAGCAAACAAGCAATTAA

mRNA sequence

ATGTTACCTGATGATGATGAGCCCCTACCTAATCAAGGGGATGTTGAGTTATCCCAAGATGACTTCGAAGATTCTTTTTGCGATCCTCCAACCTCATCTAAAAAAGATGCGACCTTAGTCCTTGTTAGGTCGCCAACCAAAAAGGTCTTGGAGGAGATTACTGATGACTCATTCCTTAAAGGAAATCAAATCGCCTCTGAGGTAGCAGGCAAGACACGTGCTCCTTTGCCACCTAAGCAAACAAGCAATTAA

Coding sequence (CDS)

ATGTTACCTGATGATGATGAGCCCCTACCTAATCAAGGGGATGTTGAGTTATCCCAAGATGACTTCGAAGATTCTTTTTGCGATCCTCCAACCTCATCTAAAAAAGATGCGACCTTAGTCCTTGTTAGGTCGCCAACCAAAAAGGTCTTGGAGGAGATTACTGATGACTCATTCCTTAAAGGAAATCAAATCGCCTCTGAGGTAGCAGGCAAGACACGTGCTCCTTTGCCACCTAAGCAAACAAGCAATTAA

Protein sequence

MLPDDDEPLPNQGDVELSQDDFEDSFCDPPTSSKKDATLVLVRSPTKKVLEEITDDSFLKGNQIASEVAGKTRAPLPPKQTSN

Homology

[Close]

BLAST of MELO3C008728 vs. NCBI nr
Match: KAA0049885.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK07623.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 135.2 bits (339), Expect = 2.6e-28
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MLPDDDEPLPNQGDVELSQDDFEDSFCDPPTSSKKDATLVLVRSPTKKVLEEITDDSFLK 60
          MLPDDDEPLPNQGDVELSQDDFEDSFCDPPTSSKKDATLVLVRSPTKKVLEEITDDSFLK
Sbjct: 1  MLPDDDEPLPNQGDVELSQDDFEDSFCDPPTSSKKDATLVLVRSPTKKVLEEITDDSFLK 60

Query: 61 GNQIASEV 69
          GNQIASEV
Sbjct: 61 GNQIASEV 68

[Close]

BLAST of MELO3C008728 vs. NCBI nr
Match: KAA0056630.1 (hypothetical protein E6C27_scaffold288G001510 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 3.4e-04
Identity = 32/68 (47.06%), Postives = 39/68 (57.35%), Query Frame = 0


Query: 20  DDFEDSFCDP------PTSSKKDATLVLVRSPTKKVLEEITDDSFLKGNQIASEVAGKTR 79
           D F+DS CDP         +  DA+   V SP+K+VLE+  DD   KG +  SE AGKT 
Sbjct: 92  DLFQDSICDPLAFIDDAFKASDDASQTSVVSPSKEVLEKAVDDPLQKGKETTSEAAGKTS 151

Query: 80  APLPPKQT 82
            PL PKQT
Sbjct: 152 LPLLPKQT 159

[Close]

BLAST of MELO3C008728 vs. NCBI nr
Match: KAA0067817.1 (hypothetical protein E6C27_scaffold2484G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 3.4e-04
Identity = 33/60 (55.00%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 23  EDSFCDPPTSSKKDATLVLVRSPTKKVLEEITDDSFLKGNQIASEVAGKTRAPLPPKQTS 82
           +D   DP     KDA LV V SP K+VLE+  DDS LKG QI  EV G+T  P PPKQ S
Sbjct: 57  KDEIKDP-----KDAPLVPVGSPRKEVLEKNIDDSLLKGKQIVFEVVGQTYPPSPPKQRS 111

[Close]

BLAST of MELO3C008728 vs. NCBI nr
Match: TYK29776.1 (hypothetical protein E5676_scaffold2208G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 4.5e-04
Identity = 35/82 (42.68%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 6   DEPLPNQGDVELSQDDFEDSFCD------PPTSSKKDATLVLVRSPTKKVLEEITDDSFL 65
           D+PL +QGD  L QD  +DS CD            ++ TL LV    K +LE+  DD   
Sbjct: 40  DDPLADQGDERL-QDLLQDSLCDLLAFIGDTCKESENTTLTLVVLSNKNILEKAIDDPLQ 99

Query: 66  KGNQIASEVAGKTRAPLPPKQT 82
           K  Q+ SE A KTR P PPKQ+
Sbjct: 100 KRKQVDSEDASKTRQPSPPKQS 120

[Close]

BLAST of MELO3C008728 vs. NCBI nr
Match: KAA0043584.1 (hypothetical protein E6C27_scaffold320G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 4.5e-04
Identity = 35/82 (42.68%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 6   DEPLPNQGDVELSQDDFEDSFCD------PPTSSKKDATLVLVRSPTKKVLEEITDDSFL 65
           D+PL +QGD  L QD  +DS CD            ++ TL LV    K +LE+  DD   
Sbjct: 85  DDPLADQGDERL-QDLLQDSLCDLLAFIGDTCKESENTTLTLVVLSNKNILEKAIDDPLQ 144

Query: 66  KGNQIASEVAGKTRAPLPPKQT 82
           K  Q+ SE A KTR P PPKQ+
Sbjct: 145 KRKQVDSEDASKTRQPSPPKQS 165

[Close]

BLAST of MELO3C008728 vs. ExPASy TrEMBL
Match: A0A5A7U8D9 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00220 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.3e-28
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MLPDDDEPLPNQGDVELSQDDFEDSFCDPPTSSKKDATLVLVRSPTKKVLEEITDDSFLK 60
          MLPDDDEPLPNQGDVELSQDDFEDSFCDPPTSSKKDATLVLVRSPTKKVLEEITDDSFLK
Sbjct: 1  MLPDDDEPLPNQGDVELSQDDFEDSFCDPPTSSKKDATLVLVRSPTKKVLEEITDDSFLK 60

Query: 61 GNQIASEV 69
          GNQIASEV
Sbjct: 61 GNQIASEV 68

[Close]

BLAST of MELO3C008728 vs. ExPASy TrEMBL
Match: A0A5A7UNI4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001510 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.7e-04
Identity = 32/68 (47.06%), Postives = 39/68 (57.35%), Query Frame = 0


Query: 20  DDFEDSFCDP------PTSSKKDATLVLVRSPTKKVLEEITDDSFLKGNQIASEVAGKTR 79
           D F+DS CDP         +  DA+   V SP+K+VLE+  DD   KG +  SE AGKT 
Sbjct: 92  DLFQDSICDPLAFIDDAFKASDDASQTSVVSPSKEVLEKAVDDPLQKGKETTSEAAGKTS 151

Query: 80  APLPPKQT 82
            PL PKQT
Sbjct: 152 LPLLPKQT 159

[Close]

BLAST of MELO3C008728 vs. ExPASy TrEMBL
Match: A0A5A7VKU1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00210 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.7e-04
Identity = 33/60 (55.00%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 23  EDSFCDPPTSSKKDATLVLVRSPTKKVLEEITDDSFLKGNQIASEVAGKTRAPLPPKQTS 82
           +D   DP     KDA LV V SP K+VLE+  DDS LKG QI  EV G+T  P PPKQ S
Sbjct: 57  KDEIKDP-----KDAPLVPVGSPRKEVLEKNIDDSLLKGKQIVFEVVGQTYPPSPPKQRS 111

[Close]

BLAST of MELO3C008728 vs. ExPASy TrEMBL
Match: A0A5D3E1H0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2208G00350 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.2e-04
Identity = 35/82 (42.68%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 6   DEPLPNQGDVELSQDDFEDSFCD------PPTSSKKDATLVLVRSPTKKVLEEITDDSFL 65
           D+PL +QGD  L QD  +DS CD            ++ TL LV    K +LE+  DD   
Sbjct: 40  DDPLADQGDERL-QDLLQDSLCDLLAFIGDTCKESENTTLTLVVLSNKNILEKAIDDPLQ 99

Query: 66  KGNQIASEVAGKTRAPLPPKQT 82
           K  Q+ SE A KTR P PPKQ+
Sbjct: 100 KRKQVDSEDASKTRQPSPPKQS 120

[Close]

BLAST of MELO3C008728 vs. ExPASy TrEMBL
Match: A0A5A7TJU0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G00130 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.2e-04
Identity = 35/82 (42.68%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 6   DEPLPNQGDVELSQDDFEDSFCD------PPTSSKKDATLVLVRSPTKKVLEEITDDSFL 65
           D+PL +QGD  L QD  +DS CD            ++ TL LV    K +LE+  DD   
Sbjct: 85  DDPLADQGDERL-QDLLQDSLCDLLAFIGDTCKESENTTLTLVVLSNKNILEKAIDDPLQ 144

Query: 66  KGNQIASEVAGKTRAPLPPKQT 82
           K  Q+ SE A KTR P PPKQ+
Sbjct: 145 KRKQVDSEDASKTRQPSPPKQS 165

The following BLAST results are available for this feature:

BLAST of MELO3C008728 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049885.1	2.6e-28	100.00	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK07623.1 retrotranspos...	[more]
KAA0056630.1	3.4e-04	47.06	hypothetical protein E6C27_scaffold288G001510 [Cucumis melo var. makuwa]	[more]
KAA0067817.1	3.4e-04	55.00	hypothetical protein E6C27_scaffold2484G00210 [Cucumis melo var. makuwa]	[more]
TYK29776.1	4.5e-04	42.68	hypothetical protein E5676_scaffold2208G00350 [Cucumis melo var. makuwa]	[more]
KAA0043584.1	4.5e-04	42.68	hypothetical protein E6C27_scaffold320G00130 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C008728 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C008728 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U8D9	1.3e-28	100.00	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7UNI4	1.7e-04	47.06	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VKU1	1.7e-04	55.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3E1H0	2.2e-04	42.68	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TJU0	2.2e-04	42.68	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C008728 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008728.1	MELO3C008728.1	mRNA