MELO3C008562 (gene) Melon (DHL92) v4

Overview
NameMELO3C008562
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGATA zinc finger domain-containing protein 10-like isoform X2
Locationchr06: 28116675 .. 28117202 (-)
RNA-Seq ExpressionMELO3C008562
SyntenyMELO3C008562
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGATCGAACAACACAAGACTTCGTGATGTAGTAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATAAGAGGTACATGGAGAAGATACATAATATGTACGATCTACCTATTGTACCTCCACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAACTGAACTCGATGAAGTTTACCATAATGTAGAAGAAGTGCCTCCTACAACACAAACACAGAGCCAAACTGGTTATGGTAGTCTGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTGAGTTCGGTACAGGATATTATGATGCAGGGGTCGGTCCATCTTATTCTTACATGCATGGACATGGACGTGGCTATGGGGAACATAACGAATATCTGTATCATGAAGCACCTACAGATGTATCAGATCGACAATAGTACCAACAAGAACCAAAGAACCAAGAGGACCAAGAACAACATAGAGTTCAGAGTCGACGTCGACAACCAACTTGAAATCGACGACGTCCGAGTTGTGGAACACATTGA

mRNA sequence

AGATCGAACAACACAAGACTTCGTGATGTAGTAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATAAGAGGTACATGGAGAAGATACATAATATGTACGATCTACCTATTGTACCTCCACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAACTGAACTCGATGAAGTTTACCATAATGTAGAAGAAGTGCCTCCTACAACACAAACACAGAGCCAAACTGGTTATGAGTTCGGTACAGGATATTATGATGCAGGGGTCGGTCCATCTTATTCTTACATGCATGGACATGGACGTGGCTATGGGGAACATAACGAATATCTGTATCATGAAGCACCTACAGATGTATCAGATCGACAATAGTACCAACAAGAACCAAAGAACCAAGAGGACCAAGAACAACATAGAGTTCAGAGTCGACGTCGACAACCAACTTGAAATCGACGACGTCCGAGTTGTGGAACACATTGA

Coding sequence (CDS)

ATGGAGAAGATACATAATATGTACGATCTACCTATTGTACCTCCACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAACTGAACTCGATGAAGTTTACCATAATGTAGAAGAAGTGCCTCCTACAACACAAACACAGAGCCAAACTGGTTATGAGTTCGGTACAGGATATTATGATGCAGGGGTCGGTCCATCTTATTCTTACATGCATGGACATGGACGTGGCTATGGGGAACATAACGAATATCTGTATCATGAAGCACCTACAGATGTATCAGATCGACAATAG

Protein sequence

MEKIHNMYDLPIVPPPVHRGRVRVEETELDEVYHNVEEVPPTTQTQSQTGYEFGTGYYDAGVGPSYSYMHGHGRGYGEHNEYLYHEAPTDVSDRQ
Homology
[Close]
BLAST of MELO3C008562 vs. NCBI nr
Match: KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 5.1e-36
Identity = 85/121 (70.25%), Postives = 87/121 (71.90%), Query Frame = 0 

Query: 1   MEKIHNMYDLPIVPPPVHRGRVRVEETELDEVYHNVEEVPPTTQTQSQTGY--------- 60
           ME+IHNMYDLPIVPPPVHRG VRVEE ELD+VYHNVEEVP TTQTQSQTGY         
Sbjct: 66  MEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPT 125

Query: 61  --------EFGTGYYDAGVG---------PSYSYMHGHGRGYGEHNEYLYHEAPTDVSDR 96
                   E G GYYDAGVG         PS SYMHGH RGYGEHNEYLYHEAP DVSDR
Sbjct: 126 FEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSRGYGEHNEYLYHEAPADVSDR 185

[Close]
BLAST of MELO3C008562 vs. NCBI nr
Match: TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 6.6e-36
Identity = 85/121 (70.25%), Postives = 87/121 (71.90%), Query Frame = 0 

Query: 1   MEKIHNMYDLPIVPPPVHRGRVRVEETELDEVYHNVEEVPPTTQTQSQTGY--------- 60
           MEKIHN+YDLPIVPPPVHR R RVEE ELDEVYHNVEEVPPTTQTQSQTGY         
Sbjct: 344 MEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPT 403

Query: 61  --------EFGTGYYDA---------GVGPSYSYMHGHGRGYGEHNEYLYHEAPTDVSDR 96
                   E   GYYDA          VGPS SYM+GHGRGYGEHNEYLYHEAPTDVSDR
Sbjct: 404 FGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAPTDVSDR 463

[Close]
BLAST of MELO3C008562 vs. NCBI nr
Match: TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 160.2 bits (404), Expect = 8.6e-36
Identity = 85/121 (70.25%), Postives = 87/121 (71.90%), Query Frame = 0 

Query: 1   MEKIHNMYDLPIVPPPVHRGRVRVEETELDEVYHNVEEVPPTTQTQSQTGY--------- 60
           ME+IHNMYDLPIVPPPVHRG VRVEE ELD+VYHNVEEVP TTQTQSQTGY         
Sbjct: 54  MEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPT 113

Query: 61  --------EFGTGYYDAGVG---------PSYSYMHGHGRGYGEHNEYLYHEAPTDVSDR 96
                   E G GYYDAGVG         PS SYMHGH RGYGEHNEYLYHEAP DVSDR
Sbjct: 114 FEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHRRGYGEHNEYLYHEAPADVSDR 173

[Close]
BLAST of MELO3C008562 vs. NCBI nr
Match: KAA0049532.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK16210.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 156.0 bits (393), Expect = 1.6e-34
Identity = 83/115 (72.17%), Postives = 83/115 (72.17%), Query Frame = 0 

Query: 7   MYDLPIVPPPVHRGRVRVEETELDEVYHNVEEVPPTTQTQSQTGY--------------- 66
           MYDLPIVPP VHRGRVRVEE ELDEVYHNVEEVPPTTQTQSQTGY               
Sbjct: 1   MYDLPIVPPRVHRGRVRVEEVELDEVYHNVEEVPPTTQTQSQTGYGSPMMMMPTFGAGYC 60

Query: 67  --EFGTGYYDAG---------VGPSYSYMHGHGRGYGEHNEYLYHEAPTDVSDRQ 96
             E  TGYYDAG         VGPS SYMHGHGRGYGEHNEYLYHEAP DVSDRQ
Sbjct: 61  DSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRGYGEHNEYLYHEAPADVSDRQ 115

[Close]
BLAST of MELO3C008562 vs. NCBI nr
Match: KAA0064245.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK18615.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 156.0 bits (393), Expect = 1.6e-34
Identity = 81/120 (67.50%), Postives = 87/120 (72.50%), Query Frame = 0 

Query: 1   MEKIHNMYDLPIVPPPVHRGRVRVEETELDEVYHNVEEVPPTTQTQSQTGY--------- 60
           ME+IHNMYDLPIVP P+HRGR+RVEE ELDEVYHNVEEVPPTT+TQSQTGY         
Sbjct: 93  MEEIHNMYDLPIVPLPIHRGRIRVEEAELDEVYHNVEEVPPTTKTQSQTGYGSLMTMMPT 152

Query: 61  --------EFGTGYYDAG---------VGPSYSYMHGHGRGYGEHNEYLYHEAPTDVSDR 95
                   E G GYYDAG         VGPS SYMHG+ RGYGEHNEYLYHEAP DVSD+
Sbjct: 153 FGARYCDSEVGRGYYDAGVDLSSSYMDVGPSTSYMHGYERGYGEHNEYLYHEAPADVSDQ 212

[Close]
BLAST of MELO3C008562 vs. ExPASy TrEMBL
Match: A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.4e-36
Identity = 85/121 (70.25%), Postives = 87/121 (71.90%), Query Frame = 0 

Query: 1   MEKIHNMYDLPIVPPPVHRGRVRVEETELDEVYHNVEEVPPTTQTQSQTGY--------- 60
           ME+IHNMYDLPIVPPPVHRG VRVEE ELD+VYHNVEEVP TTQTQSQTGY         
Sbjct: 66  MEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPT 125

Query: 61  --------EFGTGYYDAGVG---------PSYSYMHGHGRGYGEHNEYLYHEAPTDVSDR 96
                   E G GYYDAGVG         PS SYMHGH RGYGEHNEYLYHEAP DVSDR
Sbjct: 126 FEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSRGYGEHNEYLYHEAPADVSDR 185

[Close]
BLAST of MELO3C008562 vs. ExPASy TrEMBL
Match: A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.2e-36
Identity = 85/121 (70.25%), Postives = 87/121 (71.90%), Query Frame = 0 

Query: 1   MEKIHNMYDLPIVPPPVHRGRVRVEETELDEVYHNVEEVPPTTQTQSQTGY--------- 60
           MEKIHN+YDLPIVPPPVHR R RVEE ELDEVYHNVEEVPPTTQTQSQTGY         
Sbjct: 344 MEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPT 403

Query: 61  --------EFGTGYYDA---------GVGPSYSYMHGHGRGYGEHNEYLYHEAPTDVSDR 96
                   E   GYYDA          VGPS SYM+GHGRGYGEHNEYLYHEAPTDVSDR
Sbjct: 404 FGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAPTDVSDR 463

[Close]
BLAST of MELO3C008562 vs. ExPASy TrEMBL
Match: A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 4.2e-36
Identity = 85/121 (70.25%), Postives = 87/121 (71.90%), Query Frame = 0 

Query: 1   MEKIHNMYDLPIVPPPVHRGRVRVEETELDEVYHNVEEVPPTTQTQSQTGY--------- 60
           ME+IHNMYDLPIVPPPVHRG VRVEE ELD+VYHNVEEVP TTQTQSQTGY         
Sbjct: 54  MEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPT 113

Query: 61  --------EFGTGYYDAGVG---------PSYSYMHGHGRGYGEHNEYLYHEAPTDVSDR 96
                   E G GYYDAGVG         PS SYMHGH RGYGEHNEYLYHEAP DVSDR
Sbjct: 114 FEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHRRGYGEHNEYLYHEAPADVSDR 173

[Close]
BLAST of MELO3C008562 vs. ExPASy TrEMBL
Match: A0A5D3CXX3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001390 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 7.9e-35
Identity = 83/115 (72.17%), Postives = 83/115 (72.17%), Query Frame = 0 

Query: 7   MYDLPIVPPPVHRGRVRVEETELDEVYHNVEEVPPTTQTQSQTGY--------------- 66
           MYDLPIVPP VHRGRVRVEE ELDEVYHNVEEVPPTTQTQSQTGY               
Sbjct: 1   MYDLPIVPPRVHRGRVRVEEVELDEVYHNVEEVPPTTQTQSQTGYGSPMMMMPTFGAGYC 60

Query: 67  --EFGTGYYDAG---------VGPSYSYMHGHGRGYGEHNEYLYHEAPTDVSDRQ 96
             E  TGYYDAG         VGPS SYMHGHGRGYGEHNEYLYHEAP DVSDRQ
Sbjct: 61  DSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRGYGEHNEYLYHEAPADVSDRQ 115

[Close]
BLAST of MELO3C008562 vs. ExPASy TrEMBL
Match: A0A5A7VEC1 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001470 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 7.9e-35
Identity = 81/120 (67.50%), Postives = 87/120 (72.50%), Query Frame = 0 

Query: 1   MEKIHNMYDLPIVPPPVHRGRVRVEETELDEVYHNVEEVPPTTQTQSQTGY--------- 60
           ME+IHNMYDLPIVP P+HRGR+RVEE ELDEVYHNVEEVPPTT+TQSQTGY         
Sbjct: 93  MEEIHNMYDLPIVPLPIHRGRIRVEEAELDEVYHNVEEVPPTTKTQSQTGYGSLMTMMPT 152

Query: 61  --------EFGTGYYDAG---------VGPSYSYMHGHGRGYGEHNEYLYHEAPTDVSDR 95
                   E G GYYDAG         VGPS SYMHG+ RGYGEHNEYLYHEAP DVSD+
Sbjct: 153 FGARYCDSEVGRGYYDAGVDLSSSYMDVGPSTSYMHGYERGYGEHNEYLYHEAPADVSDQ 212

The following BLAST results are available for this feature:
BLAST of MELO3C008562 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062642.15.1e-3670.25mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
TYK23842.16.6e-3670.25serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
TYK01176.18.6e-3670.25GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0049532.11.6e-3472.17GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0064245.11.6e-3467.50GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
BLAST of MELO3C008562 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C008562 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V3422.4e-3670.25Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3DJV73.2e-3670.25Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5D3BSG84.2e-3670.25GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5D3CXX37.9e-3572.17GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5A7VEC17.9e-3567.50GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
BLAST of MELO3C008562 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008562.1MELO3C008562.1mRNA