MELO3C008439.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C008439.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr03: 6496467 .. 6496628 (+)
RNA-Seq ExpressionMELO3C008439.jh1
SyntenyMELO3C008439.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGACGGGGACGTTAAGGGAGCAGCGTTTGAACGTTCATGGTAGCAGCGGCCGACAACGTTCGAAGATAGGAAAGTTAAGGATAGCAACTACCGTCAGTGTTCAGGGAGAAGACGGGGTTGGAAACTGGGACGTTCACGGGGAGGGATTTTATGTTTGA

mRNA sequence

ATGAGGACGGGGACGTTAAGGGAGCAGCGTTTGAACGTTCATGGTAGCAGCGGCCGACAACGTTCGAAGATAGGAAAGTTAAGGATAGCAACTACCGTCAGTGTTCAGGGAGAAGACGGGGTTGGAAACTGGGACGTTCACGGGGAGGGATTTTATGTTTGA

Coding sequence (CDS)

ATGAGGACGGGGACGTTAAGGGAGCAGCGTTTGAACGTTCATGGTAGCAGCGGCCGACAACGTTCGAAGATAGGAAAGTTAAGGATAGCAACTACCGTCAGTGTTCAGGGAGAAGACGGGGTTGGAAACTGGGACGTTCACGGGGAGGGATTTTATGTTTGA

Protein sequence

MRTGTLREQRLNVHGSSGRQRSKIGKLRIATTVSVQGEDGVGNWDVHGEGFYV
Homology
[Close]
BLAST of MELO3C008439.jh1 vs. NCBI nr
Match: TYK27249.1 (hypothetical protein E5676_scaffold244G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 50.4 bits (119), Expect = 4.72e-06
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 3  TGTLREQRL-NVHGSSGRQRSKIGKLRIATTVSVQGED 39
          TGTLREQR  NVHGS+ R RSK GKLR+A   S+QGE+
Sbjct: 40 TGTLREQRCSNVHGSNNRWRSKTGKLRVAAANSIQGEE 77

[Close]
BLAST of MELO3C008439.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DV65 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold244G00120 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.28e-06
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 3  TGTLREQRL-NVHGSSGRQRSKIGKLRIATTVSVQGED 39
          TGTLREQR  NVHGS+ R RSK GKLR+A   S+QGE+
Sbjct: 40 TGTLREQRCSNVHGSNNRWRSKTGKLRVAAANSIQGEE 77

The following BLAST results are available for this feature:
BLAST of MELO3C008439.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK27249.14.72e-0668.42hypothetical protein E5676_scaffold244G00120 [Cucumis melo var. makuwa][more]
BLAST of MELO3C008439.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C008439.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DV652.28e-0668.42Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of MELO3C008439.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008439.jh1.t1MELO3C008439.jh1.t1mRNA