MELO3C008228.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C008228.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionThaumatin-like protein
Locationchr03: 2271186 .. 2271602 (-)
RNA-Seq ExpressionMELO3C008228.jh1
SyntenyMELO3C008228.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAACCGAAGCAAGTTTTTCTTCTTCAACCTCCAAAGAACTATCATGACCCCTCTTCCTTCTAACAAATATATGTAACCTAATATCCATTCGGCTTGATTCAACCAACTACACCCTCTGGAAGTTCCAATTTGAACCTATGCTGAAAGCGTTGTACGACTTTATTGACGAATCCTTTCCCACACCTCTGAAGACGATTTCAAACTCCACAACTGTGAGTTCCTCAACAACTACTCAGACCACTTCGTCTTCAACAACCGAACTCAGACCACTTCGTCTTCAACAACCGAACTCAGACCACTTCGTCTTCAACAATCGAACTCATACCACTTCGTCTTCAACAATCGAAATCAGACCACTTCGTCTTCAACAACCGAAATCAGACCGCTTCGTCTTCAACAACCAAAATTAGTAA

mRNA sequence

ATGGGAACCGAAGCAAGTTTTTCTTCTTCAACCTCCAAAGAACTATCATGACCCCTCTTCCTTCTAACAAATATATGTAACCTAATATCCATTCGGCTTGATTCAACCAACTACACCCTCTGGAAGTTCCAATTTGAACCTATGCTGAAAGCGTTGTACGACTTTATTGACGAATCCTTTCCCACACCTCTGAAGACGATTTCAAACTCCACAACTGTGAGTTCCTCAACAACTACTCAGACCACTTCGTCTTCAACAACCGAACTCAGACCACTTCGTCTTCAACAACCGAACTCAGACCACTTCGTCTTCAACAATCGAACTCATACCACTTCGTCTTCAACAATCGAAATCAGACCACTTCGTCTTCAACAACCGAAATCAGACCGCTTCGTCTTCAACAACCAAAATTAGTAA

Coding sequence (CDS)

ATGCTGAAAGCGTTGTACGACTTTATTGACGAATCCTTTCCCACACCTCTGAAGACGATTTCAAACTCCACAACTGTGAGTTCCTCAACAACTACTCAGACCACTTCGTCTTCAACAACCGAACTCAGACCACTTCGTCTTCAACAACCGAACTCAGACCACTTCGTCTTCAACAATCGAACTCATACCACTTCGTCTTCAACAATCGAAATCAGACCACTTCGTCTTCAACAACCGAAATCAGACCGCTTCGTCTTCAACAACCAAAATTAG

Protein sequence

MLKALYDFIDESFPTPLKTISNSTTVSSSTTTQTTSSSTTELRPLRLQQPNSDHFVFNNRTHTTSSSTIEIRPLRLQQPKSDRFVFNNQN
Homology
[Close]
BLAST of MELO3C008228.jh1 vs. NCBI nr
Match: KAA0041430.1 (Thaumatin-like protein [Cucumis melo var. makuwa] >TYK24304.1 Thaumatin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 1.29e-16
Identity = 43/50 (86.00%), Postives = 43/50 (86.00%), Query Frame = 0 

Query: 32  TQTTSSSTTELRPLRLQQPNSDHFVFNNRTHTTSSSTIEIRPLRLQQPKS 81
           TQTTSSSTTELRPLRLQQP SD FVFNNR  T SSST EIRPL LQQPKS
Sbjct: 156 TQTTSSSTTELRPLRLQQPKSDRFVFNNRNQTASSSTTEIRPLHLQQPKS 205

[Close]
BLAST of MELO3C008228.jh1 vs. NCBI nr
Match: TYK17989.1 (uncharacterized protein E5676_scaffold306G002980 [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 7.37e-07
Identity = 35/44 (79.55%), Postives = 36/44 (81.82%), Query Frame = 0 

Query: 1  MLKA--LYDFIDESFPTPLKTISNSTTVSSSTTTQTTSSSTTEL 42
          MLKA  LY FIDES PTP KTISN TT SSS TTQTTSSSTTE+
Sbjct: 48 MLKAHKLYGFIDESIPTPPKTISNPTTASSSATTQTTSSSTTEI 91

[Close]
BLAST of MELO3C008228.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DL32 (Thaumatin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00750 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.22e-17
Identity = 43/50 (86.00%), Postives = 43/50 (86.00%), Query Frame = 0 

Query: 32  TQTTSSSTTELRPLRLQQPNSDHFVFNNRTHTTSSSTIEIRPLRLQQPKS 81
           TQTTSSSTTELRPLRLQQP SD FVFNNR  T SSST EIRPL LQQPKS
Sbjct: 156 TQTTSSSTTELRPLRLQQPKSDRFVFNNRNQTASSSTTEIRPLHLQQPKS 205

[Close]
BLAST of MELO3C008228.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D3T6 (Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002980 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.57e-07
Identity = 35/44 (79.55%), Postives = 36/44 (81.82%), Query Frame = 0 

Query: 1  MLKA--LYDFIDESFPTPLKTISNSTTVSSSTTTQTTSSSTTEL 42
          MLKA  LY FIDES PTP KTISN TT SSS TTQTTSSSTTE+
Sbjct: 48 MLKAHKLYGFIDESIPTPPKTISNPTTASSSATTQTTSSSTTEI 91

The following BLAST results are available for this feature:
BLAST of MELO3C008228.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0041430.11.29e-1686.00Thaumatin-like protein [Cucumis melo var. makuwa] >TYK24304.1 Thaumatin-like pro... [more]
TYK17989.17.37e-0779.55uncharacterized protein E5676_scaffold306G002980 [Cucumis melo var. makuwa][more]
BLAST of MELO3C008228.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C008228.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DL326.22e-1786.00Thaumatin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2... [more]
A0A5D3D3T63.57e-0779.55Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695... [more]
BLAST of MELO3C008228.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..41

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008228.jh1.t1MELO3C008228.jh1.t1mRNA