MELO3C008039 (gene) Melon (DHL92) v4

Overview


Name	MELO3C008039
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Protein IDA-LIKE 2
Location	chr08: 7003821 .. 7004403 (-)
RNA-Seq Expression	MELO3C008039
Synteny	MELO3C008039

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATGATGATGATCATGTTTGTTGTTTGTAGAAGAAGATCAAGATCAAGATCAAAATCAAGATCGAGAAAGAAGGTTATTAGTTGGATGATGTTGTTAATAATAATGTTATTGATGAATGAAGAAGATGAGTTATTGATGATTTGCTGCAATGCTTCTTCACCAATTGCTACCAACAAACAACAACAACAACAACAACAACAAGAATCTGCGTTGTTCAAATTGAAGCCTAAAAATGGTAATAATTATTACTACGGCCATTTCTTTGGTTTCTTGCCAAGAAGAATCCCCATTCCTGCCTCTGGTCCTTCAAGAAAACACAATGATATTGGCTTAAGAAGTTGGAGATCCCCTTGAAATAGTATTCATCAATCAAATTAATTACATATTTTTTTCCCTTCTTCATAGTTGTAGTACTAAAAGGTTCATCAATCACCATCTCTCTCTTCTTTATCATTTTTCTTGTTTTTTTCTTTTTGGGAACAAATATTTTGAGACATGGGTTGATATTGTACATCGGATTGTTTCATGGGTTTAGTTTAAAATTTTCTATTTTTTTTTCTTTTTTGGTTGTTTAAAA

mRNA sequence

ATGATGATGATGATGATCATGTTTGTTGTTTGTAGAAGAAGATCAAGATCAAGATCAAAATCAAGATCGAGAAAGAAGGTTATTAGTTGGATGATGTTGTTAATAATAATGTTATTGATGAATGAAGAAGATGAGTTATTGATGATTTGCTGCAATGCTTCTTCACCAATTGCTACCAACAAACAACAACAACAACAACAACAACAAGAATCTGCGTTGTTCAAATTGAAGCCTAAAAATGGTAATAATTATTACTACGGCCATTTCTTTGGTTTCTTGCCAAGAAGAATCCCCATTCCTGCCTCTGGTCCTTCAAGAAAACACAATGATATTGGCTTAAGAAGTTGGAGATCCCCTTGAAATAGTATTCATCAATCAAATTAATTACATATTTTTTTCCCTTCTTCATAGTTGTAGTACTAAAAGGTTCATCAATCACCATCTCTCTCTTCTTTATCATTTTTCTTGTTTTTTTCTTTTTGGGAACAAATATTTTGAGACATGGGTTGATATTGTACATCGGATTGTTTCATGGGTTTAGTTTAAAATTTTCTATTTTTTTTTCTTTTTTGGTTGTTTAAAA

Coding sequence (CDS)

ATGATGATGATGATGATCATGTTTGTTGTTTGTAGAAGAAGATCAAGATCAAGATCAAAATCAAGATCGAGAAAGAAGGTTATTAGTTGGATGATGTTGTTAATAATAATGTTATTGATGAATGAAGAAGATGAGTTATTGATGATTTGCTGCAATGCTTCTTCACCAATTGCTACCAACAAACAACAACAACAACAACAACAACAAGAATCTGCGTTGTTCAAATTGAAGCCTAAAAATGGTAATAATTATTACTACGGCCATTTCTTTGGTTTCTTGCCAAGAAGAATCCCCATTCCTGCCTCTGGTCCTTCAAGAAAACACAATGATATTGGCTTAAGAAGTTGGAGATCCCCTTGA

Protein sequence

MMMMMIMFVVCRRRSRSRSKSRSRKKVISWMMLLIIMLLMNEEDELLMICCNASSPIATNKQQQQQQQQESALFKLKPKNGNNYYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP

Homology

[Close]

BLAST of MELO3C008039 vs. NCBI nr
Match: KAE8647464.1 (hypothetical protein Csa_004278 [Cucumis sativus])

HSP 1 Score: 233.4 bits (594), Expect = 1.0e-57
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   MMMMMIMFVVCRRRSRSRSKSRSRKKVISWMMLLIIMLLMNEEDELLMICCNASSPIATN 60
           MMMMMIMFVVCRRRSRSRSKSRSRKKVISWMMLLIIMLLMNEEDELLMICCNASSPIATN
Sbjct: 1   MMMMMIMFVVCRRRSRSRSKSRSRKKVISWMMLLIIMLLMNEEDELLMICCNASSPIATN 60

Query: 61  KQQQQQQQQESALFKLKPKNGNNYYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 120
           KQQQQQQQQESAL KLKPKNGNNYYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP
Sbjct: 61  KQQQQQQQQESALVKLKPKNGNNYYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 119

[Close]

BLAST of MELO3C008039 vs. NCBI nr
Match: KAG7034431.1 (Protein IDA-LIKE 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 98.2 bits (243), Expect = 5.0e-17
Identity = 54/96 (56.25%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 24  RKKVISWMMLLIIMLLMNEEDELLMICCNASSPIATNKQQQQQQQQESALFKLKPKNGNN 83
           R + ++WM  L++MLLMN E   L+ICCN                + +  FKLKPK  ++
Sbjct: 9   RTRKLAWM--LLVMLLMNGE---LLICCNG------------YPTKHALFFKLKPKKPHS 68

Query: 84  YYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 120
             YGHFFGFLPRRIPIPASGPSRKHNDIGLRSWR+P
Sbjct: 69  --YGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRAP 85

[Close]

BLAST of MELO3C008039 vs. NCBI nr
Match: PRQ49277.1 (hypothetical protein RchiOBHm_Chr2g0120121 [Rosa chinensis] >QRG29089.1 IDL4 [Rosa x borboniana])

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-15
Identity = 50/90 (55.56%), Postives = 61/90 (67.78%), Query Frame = 0


Query: 30  WMMLLIIMLLMNEEDELLMICCNASSPIATNKQQQQQQQQESALFKLKPKNGNNYYYGHF 89
           W+ L  I +L+N         C+  S + T  QQ  Q+QQE  +FK+KPK  N+ Y GHF
Sbjct: 18  WLFLTFIFILVN---------CSHGSRLIT--QQHNQEQQELDVFKMKPK--NHQYSGHF 77

Query: 90  FGFLPRRIPIPASGPSRKHNDIGLRSWRSP 120
            GFLPRRIPIPASGPSRKHN IGL++WRSP
Sbjct: 78  LGFLPRRIPIPASGPSRKHNGIGLKAWRSP 94

[Close]

BLAST of MELO3C008039 vs. NCBI nr
Match: KAF3970106.1 (hypothetical protein CMV_006161 [Castanea mollissima])

HSP 1 Score: 81.3 bits (199), Expect = 6.4e-12
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 73  LFKLKPKNGNNYYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 120
           +FK KPK   + Y GHF GFLPRRIPIPASGPSRKHNDIGL+SWRSP
Sbjct: 33  VFKFKPK---SQYSGHFLGFLPRRIPIPASGPSRKHNDIGLKSWRSP 76

[Close]

BLAST of MELO3C008039 vs. NCBI nr
Match: KAE7998278.1 (hypothetical protein FH972_002837 [Carpinus fangiana])

HSP 1 Score: 81.3 bits (199), Expect = 6.4e-12
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 71  SALFKLKPKNGNNYYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 120
           +++FK KP   N+ + GHF GFLPRRIPIPASGPSRKHNDIGL+SWRSP
Sbjct: 31  TSVFKFKP---NSQFSGHFLGFLPRRIPIPASGPSRKHNDIGLKSWRSP 76

[Close]

BLAST of MELO3C008039 vs. ExPASy Swiss-Prot
Match: Q6DUW6 (Protein IDA-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=IDL4 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-08
Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 71  SALFKLKPK---NGNNYYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 120
           S++F   P    + N    GHF GFLPR +P+PAS PSRKHNDIG+++  SP
Sbjct: 42  SSVFYRNPNYDHSNNTVRRGHFLGFLPRHLPVPASAPSRKHNDIGIQALLSP 93

[Close]

BLAST of MELO3C008039 vs. ExPASy Swiss-Prot
Match: Q6DUW9 (Protein IDA-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=IDL2 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.4e-06
Identity = 37/106 (34.91%), Postives = 52/106 (49.06%), Query Frame = 0


Query: 15  SRSRSKSRSRKKVISWMMLLIIMLLMNEEDELLMICCNASSPIATNKQQQQQQQQESALF 74
           SR++    +    +S+    I++LL+     LL+  CN +             +  + +F
Sbjct: 3   SRNQRSRITSSFFVSFFTRTILLLLI-----LLLGFCNGA-------------RTNTNVF 62

Query: 75  KLKPKNGNNYYYG----HFFGFLPRRIPIPASGPSRKHNDIGLRSW 117
             KP   +N         F GFLPR  P+PASGPSRKHNDIGL SW
Sbjct: 63  NSKPHKKHNDAVSSSTKQFLGFLPRHFPVPASGPSRKHNDIGLLSW 90

[Close]

BLAST of MELO3C008039 vs. ExPASy Swiss-Prot
Match: Q6DUW7 (Protein IDA-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=IDL3 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.7e-04
Identity = 33/106 (31.13%), Postives = 54/106 (50.94%), Query Frame = 0


Query: 17  SRSKSRSRKKVISWMMLLIIMLLMNEEDELLMICCNASSPIATNKQQQQQQQQESALFKL 76
           S    RSRK  ++  + ++++LL      +L+ CCN +    TN        ++  +   
Sbjct: 2   SSRSHRSRKYQLTRTIPILVLLL------VLLSCCNGAR--TTNVFNTSSPPKQKDVVSP 61

Query: 77  KPKNGNNYYYGH----FFGFLPRRIPIPASGPSRKHNDIGLRSWRS 119
              + ++    H    F G LPR+ P+P SGPSRKHN+IGL S ++
Sbjct: 62  PHDHVHHQVQDHKSVQFLGSLPRQFPVPTSGPSRKHNEIGLSSTKT 99

[Close]

BLAST of MELO3C008039 vs. ExPASy TrEMBL
Match: A0A0A0KFQ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G484020 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.7e-42
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 31  MMLLIIMLLMNEEDELLMICCNASSPIATNKQQQQQQQQESALFKLKPKNGNNYYYGHFF 90
           MMLLIIMLLMNEEDELLMICCNASSPIATNKQQQQQQQQESAL KLKPKNGNNYYYGHFF
Sbjct: 1   MMLLIIMLLMNEEDELLMICCNASSPIATNKQQQQQQQQESALVKLKPKNGNNYYYGHFF 60

Query: 91  GFLPRRIPIPASGPSRKHNDIGLRSWRSP 120
           GFLPRRIPIPASGPSRKHNDIGLRSWRSP
Sbjct: 61  GFLPRRIPIPASGPSRKHNDIGLRSWRSP 89

[Close]

BLAST of MELO3C008039 vs. ExPASy TrEMBL
Match: A0A2P6RS79 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0120121 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 6.0e-16
Identity = 50/90 (55.56%), Postives = 61/90 (67.78%), Query Frame = 0


Query: 30  WMMLLIIMLLMNEEDELLMICCNASSPIATNKQQQQQQQQESALFKLKPKNGNNYYYGHF 89
           W+ L  I +L+N         C+  S + T  QQ  Q+QQE  +FK+KPK  N+ Y GHF
Sbjct: 18  WLFLTFIFILVN---------CSHGSRLIT--QQHNQEQQELDVFKMKPK--NHQYSGHF 77

Query: 90  FGFLPRRIPIPASGPSRKHNDIGLRSWRSP 120
            GFLPRRIPIPASGPSRKHN IGL++WRSP
Sbjct: 78  LGFLPRRIPIPASGPSRKHNGIGLKAWRSP 94

[Close]

BLAST of MELO3C008039 vs. ExPASy TrEMBL
Match: A0A5N6QG36 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_002837 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.1e-12
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 71  SALFKLKPKNGNNYYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 120
           +++FK KP   N+ + GHF GFLPRRIPIPASGPSRKHNDIGL+SWRSP
Sbjct: 31  TSVFKFKP---NSQFSGHFLGFLPRRIPIPASGPSRKHNDIGLKSWRSP 76

[Close]

BLAST of MELO3C008039 vs. ExPASy TrEMBL
Match: A0A7N2LYR6 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.1e-12
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 73  LFKLKPKNGNNYYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 120
           +FK KPK   + Y GHF GFLPRRIPIPASGPSRKHNDIGL+SWRSP
Sbjct: 33  VFKFKPK---SQYSGHFLGFLPRRIPIPASGPSRKHNDIGLKSWRSP 76

[Close]

BLAST of MELO3C008039 vs. ExPASy TrEMBL
Match: M5W2Q5 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G159700 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 4.0e-12
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 73  LFKLKPKNGNNYYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 120
           +FKLKPK  ++   GHF GFLPRRIPIPASGPSRKHNDIGLRSWRSP
Sbjct: 34  VFKLKPKYQHS---GHFSGFLPRRIPIPASGPSRKHNDIGLRSWRSP 77

[Close]

BLAST of MELO3C008039 vs. TAIR 10
Match: AT3G18715.1 (inflorescence deficient in abscission (IDA)-like 4 )

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-09
Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 71  SALFKLKPK---NGNNYYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 120
           S++F   P    + N    GHF GFLPR +P+PAS PSRKHNDIG+++  SP
Sbjct: 42  SSVFYRNPNYDHSNNTVRRGHFLGFLPRHLPVPASAPSRKHNDIGIQALLSP 93

[Close]

BLAST of MELO3C008039 vs. TAIR 10
Match: AT5G64667.1 (inflorescence deficient in abscission (IDA)-like 2 )

HSP 1 Score: 53.1 bits (126), Expect = 1.7e-07
Identity = 37/106 (34.91%), Postives = 52/106 (49.06%), Query Frame = 0


Query: 15  SRSRSKSRSRKKVISWMMLLIIMLLMNEEDELLMICCNASSPIATNKQQQQQQQQESALF 74
           SR++    +    +S+    I++LL+     LL+  CN +             +  + +F
Sbjct: 3   SRNQRSRITSSFFVSFFTRTILLLLI-----LLLGFCNGA-------------RTNTNVF 62

Query: 75  KLKPKNGNNYYYG----HFFGFLPRRIPIPASGPSRKHNDIGLRSW 117
             KP   +N         F GFLPR  P+PASGPSRKHNDIGL SW
Sbjct: 63  NSKPHKKHNDAVSSSTKQFLGFLPRHFPVPASGPSRKHNDIGLLSW 90

[Close]

BLAST of MELO3C008039 vs. TAIR 10
Match: AT5G09805.1 (inflorescence deficient in abscission (IDA)-like 3 )

HSP 1 Score: 47.0 bits (110), Expect = 1.2e-05
Identity = 33/106 (31.13%), Postives = 54/106 (50.94%), Query Frame = 0


Query: 17  SRSKSRSRKKVISWMMLLIIMLLMNEEDELLMICCNASSPIATNKQQQQQQQQESALFKL 76
           S    RSRK  ++  + ++++LL      +L+ CCN +    TN        ++  +   
Sbjct: 2   SSRSHRSRKYQLTRTIPILVLLL------VLLSCCNGAR--TTNVFNTSSPPKQKDVVSP 61

Query: 77  KPKNGNNYYYGH----FFGFLPRRIPIPASGPSRKHNDIGLRSWRS 119
              + ++    H    F G LPR+ P+P SGPSRKHN+IGL S ++
Sbjct: 62  PHDHVHHQVQDHKSVQFLGSLPRQFPVPTSGPSRKHNEIGLSSTKT 99

[Close]

BLAST of MELO3C008039 vs. TAIR 10
Match: AT1G76952.1 (inflorescence deficient in abscission (IDA)-like 5 )

HSP 1 Score: 43.5 bits (101), Expect = 1.4e-04
Identity = 32/105 (30.48%), Postives = 50/105 (47.62%), Query Frame = 0


Query: 26  KVISWMMLLIIMLLMNEEDELLMICCNASSPIATNKQQQQQQQQESALFKLKPKNGNNYY 85
           K I  MM+L++M++M     +    C A S      ++     +    FK++  N  N++
Sbjct: 4   KRIKAMMILVVMIMMVFSWRI----CEADS-----LRRYSSSSRPQRFFKVRRPNPRNHH 63

Query: 86  YGH------------FFGFLPRRIPIPASGPSRKHNDIGLRSWRS 119
           + +            F GFLP+ +PIP S PSRKHN  GL+   S
Sbjct: 64  HQNQGFNGDDYPPESFSGFLPKTLPIPHSAPSRKHNVYGLQRTNS 99

The following BLAST results are available for this feature:

BLAST of MELO3C008039 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647464.1	1.0e-57	99.16	hypothetical protein Csa_004278 [Cucumis sativus]	[more]
KAG7034431.1	5.0e-17	56.25	Protein IDA-LIKE 2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
PRQ49277.1	1.2e-15	55.56	hypothetical protein RchiOBHm_Chr2g0120121 [Rosa chinensis] >QRG29089.1 IDL4 [Ro...	[more]
KAF3970106.1	6.4e-12	78.72	hypothetical protein CMV_006161 [Castanea mollissima]	[more]
KAE7998278.1	6.4e-12	73.47	hypothetical protein FH972_002837 [Carpinus fangiana]	[more]

BLAST of MELO3C008039 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6DUW6	3.4e-08	51.92	Protein IDA-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=IDL4 PE=2 SV=1	[more]
Q6DUW9	2.4e-06	34.91	Protein IDA-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=IDL2 PE=2 SV=1	[more]
Q6DUW7	1.7e-04	31.13	Protein IDA-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=IDL3 PE=2 SV=1	[more]

BLAST of MELO3C008039 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFQ3	3.7e-42	98.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G484020 PE=4 SV=1	[more]
A0A2P6RS79	6.0e-16	55.56	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0120121 PE=4...	[more]
A0A5N6QG36	3.1e-12	73.47	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_002837 PE=4 SV=1	[more]
A0A7N2LYR6	3.1e-12	78.72	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
M5W2Q5	4.0e-12	80.85	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G159700 PE=4 SV=1	[more]

BLAST of MELO3C008039 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18715.1	2.4e-09	51.92	inflorescence deficient in abscission (IDA)-like 4	[more]
AT5G64667.1	1.7e-07	34.91	inflorescence deficient in abscission (IDA)-like 2	[more]
AT5G09805.1	1.2e-05	31.13	inflorescence deficient in abscission (IDA)-like 3	[more]
AT1G76952.1	1.4e-04	30.48	inflorescence deficient in abscission (IDA)-like 5	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..119
None	No IPR available	PANTHER	PTHR33599:SF15	PROTEIN IDA-LIKE 2	coord: 24..119
IPR039639	Protein IDA-like	PANTHER	PTHR33599	PROTEIN IDA-LIKE 5	coord: 24..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008039.1	MELO3C008039.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010227	floral organ abscission