MELO3C007927.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C007927.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionR3H domain-containing protein 2-like
Locationchr08: 6203639 .. 6204241 (-)
RNA-Seq ExpressionMELO3C007927.jh1
SyntenyMELO3C007927.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCGTGCAATCACCAAACCCTAACTTCGAAAATGCAATTCCGATCCACAAGTTATCTTACTATCTCCTTCTCCTTTGTGGTGGGGACCTTCGTTCTCTTATCTTTCATGTCTTGGAGCACCGGAGTCATGGGAGGTCGCCGATTTGGACGTAGCCACGAGTCGATTGATGCTCCCTTCTTCATCCCCTAACAAGAATTCCAAATCCTTGGACCACCCTGTTGCCGATGCTGTTACTGCCTATCATTTTTTATTCCGCTTCGTTGCTTCGGCTTCTTCTGCTCTCGATAGGGTTTCCGAGGATGATGCTATCAATCCGGTTGATCGGTTCCTTCGTGACGAGGCTTTGCACAACCCTGGCAAGCGTCTATCAAGTAAGTTGTTTATTTAGCTTTCCCGTATCGTGGATGGTGTGATTGGATTCAGGAGTTCTATAATGTCATGTTCGGTAGAGGGAGGAGAAAATTAAAAGCTGCTTGTTACGGTCTTCTCGAGGCTTTGTTTATTTAGCTGCTGGCTTTCCCTCAAGTTAGGTTCTGTTAAGTGCAATTCTTTTTAATCCTGAATTTATGTGAACTTTTATAGGTAATGCCAATTTACTTTT

mRNA sequence

CTCCGTGCAATCACCAAACCCTAACTTCGAAAATGCAATTCCGATCCACAAGTTATCTTACTATCTCCTTCTCCTTTGTGGTGGGGACCTTCGTTCTCTTATCTTTCATGTCTTGGAGCACCGGAGTCATGGGAGGTCGCCGATTTGGACGTAGCCACGAGTCGATTGATGCTCCCTTCTTCATCCCCTAACAAGAATTCCAAATCCTTGGACCACCCTGTTGCCGATGCTGTTACTGCCTATCATTTTTTATTCCGCTTCGTTGCTTCGGCTTCTTCTGCTCTCGATAGGGTTTCCGAGGATGATGCTATCAATCCGGTTGATCGGTTCCTTCGTGACGAGGCTTTGCACAACCCTGGCAAGCGTCTATCAAGTAAGTTGTTTATTTAGCTTTCCCGTATCGTGGATGGTGTGATTGGATTCAGGAGTTCTATAATGTCATGTTCGGTAGAGGGAGGAGAAAATTAAAAGCTGCTTGTTACGGTCTTCTCGAGGCTTTGTTTATTTAGCTGCTGGCTTTCCCTCAAGTTAGGTTCTGTTAAGTGCAATTCTTTTTAATCCTGAATTTATGTGAACTTTTATAGGTAATGCCAATTTACTTTT

Coding sequence (CDS)

ATGCTCCCTTCTTCATCCCCTAACAAGAATTCCAAATCCTTGGACCACCCTGTTGCCGATGCTGTTACTGCCTATCATTTTTTATTCCGCTTCGTTGCTTCGGCTTCTTCTGCTCTCGATAGGGTTTCCGAGGATGATGCTATCAATCCGGTTGATCGGTTCCTTCGTGACGAGGCTTTGCACAACCCTGGCAAGCGTCTATCAAGTAAGTTGTTTATTTAG

Protein sequence

MLPSSSPNKNSKSLDHPVADAVTAYHFLFRFVASASSALDRVSEDDAINPVDRFLRDEALHNPGKRLSSKLFI
Homology
BLAST of MELO3C007927.jh1 vs. NCBI nr
Match: KAA0025653.1 (R3H domain-containing protein 2-like [Cucumis melo var. makuwa] >TYK12526.1 R3H domain-containing protein 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 126 bits (317), Expect = 2.51e-35
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 0

Query: 1   MLPSSSPNKNSKSLDHPVADAVTAYHFLFRFVASASSALDRVSEDDAINPVDRFLRDEAL 60
           MLPSSSPNKNS SLDHPVADAVTAYHFLFRFVASASSALDRVSED AINPVDRFLR+EAL
Sbjct: 73  MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSED-AINPVDRFLREEAL 132

Query: 61  HNPGKRLSS 69
           HNPGKRLSS
Sbjct: 133 HNPGKRLSS 140

BLAST of MELO3C007927.jh1 vs. NCBI nr
Match: XP_008441130.1 (PREDICTED: uncharacterized protein LOC103485359 [Cucumis melo])

HSP 1 Score: 125 bits (313), Expect = 8.27e-35
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0

Query: 1  MLPSSSPNKNSKSLDHPVADAVTAYHFLFRFVASASSALDRVSEDDAINPVDRFLRDEAL 60
          MLPSSSPNKNS SLDHPVADAVTAYHFLFRFVASASSALDRVSED AINPVDRFLR+EAL
Sbjct: 1  MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSED-AINPVDRFLREEAL 60

Query: 61 HNPGKRLS 68
          HNPGKRLS
Sbjct: 61 HNPGKRLS 67

BLAST of MELO3C007927.jh1 vs. NCBI nr
Match: XP_038892280.1 (uncharacterized protein LOC120081466 [Benincasa hispida])

HSP 1 Score: 82.8 bits (203), Expect = 2.22e-16
Identity = 51/72 (70.83%), Postives = 53/72 (73.61%), Query Frame = 0

Query: 1  MLPSSSPNKNSKSLDHPVADAVTAYHFLFR----FVASASSALDRVSEDDAINPVDRFLR 60
          MLPSSSP KNSKSLDH VADA  AYHF         AS SS LDRVSED AIN VD+FLR
Sbjct: 28 MLPSSSPKKNSKSLDHSVADAAPAYHFSSASFPSLSASPSSTLDRVSED-AINQVDQFLR 87

Query: 61 DEALHNPGKRLS 68
           EALHNP +RLS
Sbjct: 88 -EALHNPRERLS 97

BLAST of MELO3C007927.jh1 vs. NCBI nr
Match: XP_008446764.1 (PREDICTED: R3H domain-containing protein 2-like [Cucumis melo] >XP_008446765.1 PREDICTED: R3H domain-containing protein 2-like [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 7.05e-15
Identity = 52/72 (72.22%), Postives = 54/72 (75.00%), Query Frame = 0

Query: 1  MLPSSSPNKNSKSLDHPVADAVTAYHFLFR----FVASASSALDRVSEDDAINPVDRFLR 60
          MLPSSSP KNSKSLD  VADA  AYHF         ASASSALDRVSED AIN VD+FLR
Sbjct: 28 MLPSSSPKKNSKSLD--VADAAPAYHFSSASFPSLSASASSALDRVSED-AINQVDQFLR 87

Query: 61 DEALHNPGKRLS 68
           EALHNP +RLS
Sbjct: 88 -EALHNPRERLS 95

BLAST of MELO3C007927.jh1 vs. NCBI nr
Match: KAA0034658.1 (R3H domain-containing protein 2-like [Cucumis melo var. makuwa] >TYK09209.1 R3H domain-containing protein 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 7.44e-15
Identity = 52/72 (72.22%), Postives = 54/72 (75.00%), Query Frame = 0

Query: 1  MLPSSSPNKNSKSLDHPVADAVTAYHFLFR----FVASASSALDRVSEDDAINPVDRFLR 60
          MLPSSSP KNSKSLD  VADA  AYHF         ASASSALDRVSED AIN VD+FLR
Sbjct: 28 MLPSSSPKKNSKSLD--VADAAPAYHFSSASFPSLSASASSALDRVSED-AINQVDQFLR 87

Query: 61 DEALHNPGKRLS 68
           EALHNP +RLS
Sbjct: 88 -EALHNPRERLS 95

BLAST of MELO3C007927.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CQ27 (R3H domain-containing protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001070 PE=4 SV=1)

HSP 1 Score: 126 bits (317), Expect = 1.21e-35
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 0

Query: 1   MLPSSSPNKNSKSLDHPVADAVTAYHFLFRFVASASSALDRVSEDDAINPVDRFLRDEAL 60
           MLPSSSPNKNS SLDHPVADAVTAYHFLFRFVASASSALDRVSED AINPVDRFLR+EAL
Sbjct: 73  MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSED-AINPVDRFLREEAL 132

Query: 61  HNPGKRLSS 69
           HNPGKRLSS
Sbjct: 133 HNPGKRLSS 140

BLAST of MELO3C007927.jh1 vs. ExPASy TrEMBL
Match: A0A1S3B3D2 (uncharacterized protein LOC103485359 OS=Cucumis melo OX=3656 GN=LOC103485359 PE=4 SV=1)

HSP 1 Score: 125 bits (313), Expect = 4.00e-35
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0

Query: 1  MLPSSSPNKNSKSLDHPVADAVTAYHFLFRFVASASSALDRVSEDDAINPVDRFLRDEAL 60
          MLPSSSPNKNS SLDHPVADAVTAYHFLFRFVASASSALDRVSED AINPVDRFLR+EAL
Sbjct: 1  MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSED-AINPVDRFLREEAL 60

Query: 61 HNPGKRLS 68
          HNPGKRLS
Sbjct: 61 HNPGKRLS 67

BLAST of MELO3C007927.jh1 vs. ExPASy TrEMBL
Match: A0A1S3BGI0 (R3H domain-containing protein 2-like OS=Cucumis melo OX=3656 GN=LOC103489394 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.41e-15
Identity = 52/72 (72.22%), Postives = 54/72 (75.00%), Query Frame = 0

Query: 1  MLPSSSPNKNSKSLDHPVADAVTAYHFLFR----FVASASSALDRVSEDDAINPVDRFLR 60
          MLPSSSP KNSKSLD  VADA  AYHF         ASASSALDRVSED AIN VD+FLR
Sbjct: 28 MLPSSSPKKNSKSLD--VADAAPAYHFSSASFPSLSASASSALDRVSED-AINQVDQFLR 87

Query: 61 DEALHNPGKRLS 68
           EALHNP +RLS
Sbjct: 88 -EALHNPRERLS 95

BLAST of MELO3C007927.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CFX4 (R3H domain-containing protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002020 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.60e-15
Identity = 52/72 (72.22%), Postives = 54/72 (75.00%), Query Frame = 0

Query: 1  MLPSSSPNKNSKSLDHPVADAVTAYHFLFR----FVASASSALDRVSEDDAINPVDRFLR 60
          MLPSSSP KNSKSLD  VADA  AYHF         ASASSALDRVSED AIN VD+FLR
Sbjct: 28 MLPSSSPKKNSKSLD--VADAAPAYHFSSASFPSLSASASSALDRVSED-AINQVDQFLR 87

Query: 61 DEALHNPGKRLS 68
           EALHNP +RLS
Sbjct: 88 -EALHNPRERLS 95

BLAST of MELO3C007927.jh1 vs. ExPASy TrEMBL
Match: A0A6J1HWM6 (R3H domain-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111467527 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.19e-11
Identity = 45/72 (62.50%), Postives = 47/72 (65.28%), Query Frame = 0

Query: 1  MLPSSSPNKNSKSLDHPVADAVTAYHFLFRFV----ASASSALDRVSEDDAINPVDRFLR 60
          MLPSSSP KNSKSLDH VADA    H          AS SS  DR SED  IN VD+FLR
Sbjct: 28 MLPSSSPLKNSKSLDHSVADAALGSHSSSASFPSPSASTSSTPDRASED-VINQVDQFLR 87

Query: 61 DEALHNPGKRLS 68
           EALHNP +RLS
Sbjct: 88 -EALHNPRERLS 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0025653.12.51e-3595.65R3H domain-containing protein 2-like [Cucumis melo var. makuwa] >TYK12526.1 R3H ... [more]
XP_008441130.18.27e-3595.59PREDICTED: uncharacterized protein LOC103485359 [Cucumis melo][more]
XP_038892280.12.22e-1670.83uncharacterized protein LOC120081466 [Benincasa hispida][more]
XP_008446764.17.05e-1572.22PREDICTED: R3H domain-containing protein 2-like [Cucumis melo] >XP_008446765.1 P... [more]
KAA0034658.17.44e-1572.22R3H domain-containing protein 2-like [Cucumis melo var. makuwa] >TYK09209.1 R3H ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CQ271.21e-3595.65R3H domain-containing protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A1S3B3D24.00e-3595.59uncharacterized protein LOC103485359 OS=Cucumis melo OX=3656 GN=LOC103485359 PE=... [more]
A0A1S3BGI03.41e-1572.22R3H domain-containing protein 2-like OS=Cucumis melo OX=3656 GN=LOC103489394 PE=... [more]
A0A5D3CFX43.60e-1572.22R3H domain-containing protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A6J1HWM62.19e-1162.50R3H domain-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111467527... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C007927.jh1.t1MELO3C007927.jh1.t1mRNA