MELO3C007900.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C007900.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionTransducin/WD40 repeat-like superfamily protein
Locationchr08: 5995212 .. 5995802 (-)
RNA-Seq ExpressionMELO3C007900.jh1
SyntenyMELO3C007900.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGAGAAATCAAGACGAGTCCCCAGAAAGATCAAGCCCCCGGCCAATCTCTGCCTCCGAAAACCAAGATCCGACGACGCCAAGAAGAACAACAAGCCCCCGTCGGCTATGACCCTGTTCGAGCGCCTCCGTGAGGCCGTTTTCCGATTCATAATGCTATGTGCTCTCTCAAAGGCCACAAATCATCATCCCACCGCCGGAGCCGCCTTCCAAGACGACGTAGTCGTTAGGCGGCGACACTCGTATCCTAACGTCGACCACCACCACAGTGAAGCCGTTGCCGATTGCATCGAGTTCATCAAGATGAAGGCGTATTCCGACGATCACGAGGTAATTCTGATCGGTGGACGCGGATGATGATATAGCGGTGCCGGTGCGGGTCAGGTAAAAAGTGCAGGGGATTGTTAGGAAATGGACCCAATTTAGTGACGCTTGTCTTGTGTGTTTGAAATTTAAATGTATTGTTCGTACGTTTTACAATTTGGATTTTATGTAGATTGTGTAAATTATATTGGAAAAATAGATGAGTTTATAGAATAATTTCATGTGTATATATATCTTTTTATATGTATGGTTTTATTTTTGTTA

mRNA sequence

ATGGCCGAGAAATCAAGACGAGTCCCCAGAAAGATCAAGCCCCCGGCCAATCTCTGCCTCCGAAAACCAAGATCCGACGACGCCAAGAAGAACAACAAGCCCCCGTCGGCTATGACCCTGTTCGAGCGCCTCCGTGAGGCCGTTTTCCGATTCATAATGCTATGTGCTCTCTCAAAGGCCACAAATCATCATCCCACCGCCGGAGCCGCCTTCCAAGACGACGTAGTCGTTAGGCGGCGACACTCGTATCCTAACGTCGACCACCACCACAGTGAAGCCGTTGCCGATTGCATCGAGTTCATCAAGATGAAGGCGTATTCCGACGATCACGAGGTAATTCTGATCGGTGGACGCGGATGATGATATAGCGGTGCCGGTGCGGGTCAGGTAAAAAGTGCAGGGGATTGTTAGGAAATGGACCCAATTTAGTGACGCTTGTCTTGTGTGTTTGAAATTTAAATGTATTGTTCGTACGTTTTACAATTTGGATTTTATGTAGATTGTGTAAATTATATTGGAAAAATAGATGAGTTTATAGAATAATTTCATGTGTATATATATCTTTTTATATGTATGGTTTTATTTTTGTTA

Coding sequence (CDS)

ATGGCCGAGAAATCAAGACGAGTCCCCAGAAAGATCAAGCCCCCGGCCAATCTCTGCCTCCGAAAACCAAGATCCGACGACGCCAAGAAGAACAACAAGCCCCCGTCGGCTATGACCCTGTTCGAGCGCCTCCGTGAGGCCGTTTTCCGATTCATAATGCTATGTGCTCTCTCAAAGGCCACAAATCATCATCCCACCGCCGGAGCCGCCTTCCAAGACGACGTAGTCGTTAGGCGGCGACACTCGTATCCTAACGTCGACCACCACCACAGTGAAGCCGTTGCCGATTGCATCGAGTTCATCAAGATGAAGGCGTATTCCGACGATCACGAGGTAATTCTGATCGGTGGACGCGGATGA

Protein sequence

MAEKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKATNHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHEVILIGGRG
Homology
BLAST of MELO3C007900.jh1 vs. NCBI nr
Match: KAA0025678.1 (Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa] >TYK12553.1 Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 240 bits (613), Expect = 5.57e-80
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0

Query: 1   MAEKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKA 60
           MAEKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHEVILIGGRG 119
           TNHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHEVILIGGRG
Sbjct: 61  TNHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHEVILIGGRG 119

BLAST of MELO3C007900.jh1 vs. NCBI nr
Match: KGN49339.2 (hypothetical protein Csa_003207 [Cucumis sativus])

HSP 1 Score: 207 bits (528), Expect = 1.56e-66
Identity = 107/117 (91.45%), Postives = 107/117 (91.45%), Query Frame = 0

Query: 1   MAEKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKA 60
           MAEKSRRVPRKIKPP NLCLRKPRS DAKK  KPPS MTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHEVILIGG 117
           TNHHP AGA FQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDD EVIL  G
Sbjct: 61  TNHHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDD-EVILDRG 116

BLAST of MELO3C007900.jh1 vs. NCBI nr
Match: KAG6603914.1 (hypothetical protein SDJN03_04523, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140 bits (354), Expect = 2.35e-39
Identity = 82/113 (72.57%), Postives = 87/113 (76.99%), Query Frame = 0

Query: 1   MAEKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKA 60
           MAEK+RRVP K K          R DD K N+K P AMTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKTRRVPGKAKL---------RGDDMK-NSKAPPAMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHEVI 113
           TNHH +AGA FQDDVV RRR SY N DHHHSEAVADCIEFIK KAYSDD  ++
Sbjct: 61  TNHH-SAGAVFQDDVV-RRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDQIIL 101

BLAST of MELO3C007900.jh1 vs. NCBI nr
Match: KAB1201821.1 (hypothetical protein CJ030_MR8G020135 [Morella rubra])

HSP 1 Score: 89.4 bits (220), Expect = 3.97e-20
Identity = 58/108 (53.70%), Postives = 70/108 (64.81%), Query Frame = 0

Query: 3   EKSRRVPRKIKPPANLCLRKPRSDDA-KKNNKPPSAMTLFERLREAVFRFIMLCALSKAT 62
           EK +  PRK+K   +LC+ + RS+    K NK PS MTL ER REAVFR IML A+SKAT
Sbjct: 2   EKPKASPRKLK--TSLCIPRFRSNSCTNKINKAPSPMTLLERFREAVFRLIMLSAMSKAT 61

Query: 63  NHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDD 109
           NH   +  A        +R  YPN D HHSEAVA+CIEFIK KA +D+
Sbjct: 62  NHSECSADA--------QRCYYPN-DPHHSEAVAECIEFIKKKASTDE 98

BLAST of MELO3C007900.jh1 vs. NCBI nr
Match: TXG60569.1 (hypothetical protein EZV62_015142 [Acer yangbiense])

HSP 1 Score: 89.0 bits (219), Expect = 6.97e-20
Identity = 60/115 (52.17%), Postives = 71/115 (61.74%), Query Frame = 0

Query: 3   EKSRRVPRKIKPPANLCLRKPR----SDDAKKNNKPPSAMTLFERLREAVFRFIMLCALS 62
           EK R  PRK+K   NLC+  PR     ++ +  NK  + +TL ER REAVFR IML ALS
Sbjct: 2   EKPRGSPRKMK--TNLCI--PRLIKAGNNGRNKNKNLTPVTLLERFREAVFRLIMLSALS 61

Query: 63  KATN--HHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHE 111
           KATN  HH T G++         R  Y   D HHSEAVADCIEFIK KA +DD+E
Sbjct: 62  KATNDHHHHTVGSSRVS------RSYYSPADPHHSEAVADCIEFIKKKAVADDNE 106

BLAST of MELO3C007900.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SHP0 (Transducin/WD40 repeat-like superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001350 PE=4 SV=1)

HSP 1 Score: 240 bits (613), Expect = 2.70e-80
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0

Query: 1   MAEKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKA 60
           MAEKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHEVILIGGRG 119
           TNHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHEVILIGGRG
Sbjct: 61  TNHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHEVILIGGRG 119

BLAST of MELO3C007900.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KGN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505880 PE=4 SV=1)

HSP 1 Score: 207 bits (528), Expect = 4.06e-67
Identity = 107/117 (91.45%), Postives = 107/117 (91.45%), Query Frame = 0

Query: 1   MAEKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKA 60
           MAEKSRRVPRKIKPP NLCLRKPRS DAKK  KPPS MTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHEVILIGG 117
           TNHHP AGA FQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDD EVIL  G
Sbjct: 61  TNHHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDD-EVILDRG 116

BLAST of MELO3C007900.jh1 vs. ExPASy TrEMBL
Match: A0A6A1UNG7 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR8G020135 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.92e-20
Identity = 58/108 (53.70%), Postives = 70/108 (64.81%), Query Frame = 0

Query: 3   EKSRRVPRKIKPPANLCLRKPRSDDA-KKNNKPPSAMTLFERLREAVFRFIMLCALSKAT 62
           EK +  PRK+K   +LC+ + RS+    K NK PS MTL ER REAVFR IML A+SKAT
Sbjct: 2   EKPKASPRKLK--TSLCIPRFRSNSCTNKINKAPSPMTLLERFREAVFRLIMLSAMSKAT 61

Query: 63  NHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDD 109
           NH   +  A        +R  YPN D HHSEAVA+CIEFIK KA +D+
Sbjct: 62  NHSECSADA--------QRCYYPN-DPHHSEAVAECIEFIKKKASTDE 98

BLAST of MELO3C007900.jh1 vs. ExPASy TrEMBL
Match: A0A5C7HUV3 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_015142 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.38e-20
Identity = 60/115 (52.17%), Postives = 71/115 (61.74%), Query Frame = 0

Query: 3   EKSRRVPRKIKPPANLCLRKPR----SDDAKKNNKPPSAMTLFERLREAVFRFIMLCALS 62
           EK R  PRK+K   NLC+  PR     ++ +  NK  + +TL ER REAVFR IML ALS
Sbjct: 2   EKPRGSPRKMK--TNLCI--PRLIKAGNNGRNKNKNLTPVTLLERFREAVFRLIMLSALS 61

Query: 63  KATN--HHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHE 111
           KATN  HH T G++         R  Y   D HHSEAVADCIEFIK KA +DD+E
Sbjct: 62  KATNDHHHHTVGSSRVS------RSYYSPADPHHSEAVADCIEFIKKKAVADDNE 106

BLAST of MELO3C007900.jh1 vs. ExPASy TrEMBL
Match: A0A2N9H458 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34435 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.46e-17
Identity = 54/109 (49.54%), Postives = 69/109 (63.30%), Query Frame = 0

Query: 3   EKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMT-LFERLREAVFRFIMLCALSKAT 62
           EK +  P+K+K   +LC+ + + +     NK  S +T L ER REAVFR IML A+SKAT
Sbjct: 2   EKPKASPKKLK--TSLCIPRLKGNGCTNKNKGLSPLTTLLERFREAVFRLIMLSAMSKAT 61

Query: 63  NHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDH 110
           NH  +A         V+R H YP  D HHSEAVADCIEFIK KA +D++
Sbjct: 62  NHTESAD--------VQRCH-YPINDPHHSEAVADCIEFIKKKASTDEN 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0025678.15.57e-80100.00Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa] >TYK1... [more]
KGN49339.21.56e-6691.45hypothetical protein Csa_003207 [Cucumis sativus][more]
KAG6603914.12.35e-3972.57hypothetical protein SDJN03_04523, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAB1201821.13.97e-2053.70hypothetical protein CJ030_MR8G020135 [Morella rubra][more]
TXG60569.16.97e-2052.17hypothetical protein EZV62_015142 [Acer yangbiense][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SHP02.70e-80100.00Transducin/WD40 repeat-like superfamily protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A0A0KGN34.06e-6791.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505880 PE=4 SV=1[more]
A0A6A1UNG71.92e-2053.70Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR8G020135 PE=4 SV=1[more]
A0A5C7HUV33.38e-2052.17Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_015142 PE=4 SV=1[more]
A0A2N9H4581.46e-1749.54Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34435 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36
NoneNo IPR availablePANTHERPTHR35111F10A5.9-RELATEDcoord: 11..111
NoneNo IPR availablePANTHERPTHR35111:SF1EXPRESSED PROTEINcoord: 11..111

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C007900.jh1.t1MELO3C007900.jh1.t1mRNA