MELO3C007743 (gene) Melon (DHL92) v4

Overview


Name	MELO3C007743
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Polyadenylate-binding protein
Location	chr08: 5050543 .. 5051046 (+)
RNA-Seq Expression	MELO3C007743
Synteny	MELO3C007743

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGAGAGCTCTCATGGACTTGGGTTGACTCAAGCAGTCCTTTGAAACGAGTCTTTAGCCGATTTATTGTTCATTATAAAATGGTCCGCGGTTGGGCTTTATAGATTACCCTATATATCGATCGTATTGTGGGAGCCTGTTCGGACACAATTAGGAAGAACGGAAATGGAGGAAGAGGAACACGAGGTTTACGGCGGAGAGATCCCGGTCGAGGAGGGTGACATTGACATGTCTGCCGCCGATGACGACGCCATCAAGGTTCCCTCTGTCCTCTATTTCATAACTGTAGAGATCCATTACCAATACAGTTGTGTAATGGAAGCTTGATCTGCGTGGTATGTGAATTTGTTGTCTTCTGTGGATGTTGCAGGAGCTGGACGAGATGAAGAAGAGATTGAAGGAGATGGAGGAGGAAGCAGCTGCTCTTCGCGAAATGCAAGCCAAGGTAGAAAAGGAAATGGACGCCGTTCAAGGTTTACCTCCATCTCGAATTACCTTCGACTAA

mRNA sequence

CTGAGAGCTCTCATGGACTTGGGTTGACTCAAGCAGTCCTTTGAAACGAGTCTTTAGCCGATTTATTGTTCATTATAAAATGGTCCGCGGTTGGGCTTTATAGATTACCCTATATATCGATCGTATTGTGGGAGCCTGTTCGGACACAATTAGGAAGAACGGAAATGGAGGAAGAGGAACACGAGGTTTACGGCGGAGAGATCCCGGTCGAGGAGGGTGACATTGACATGTCTGCCGCCGATGACGACGCCATCAAGGAGCTGGACGAGATGAAGAAGAGATTGAAGGAGATGGAGGAGGAAGCAGCTGCTCTTCGCGAAATGCAAGCCAAGGTAGAAAAGGAAATGGACGCCGTTCAAGGTTTACCTCCATCTCGAATTACCTTCGACTAA

Coding sequence (CDS)

ATGGAGGAAGAGGAACACGAGGTTTACGGCGGAGAGATCCCGGTCGAGGAGGGTGACATTGACATGTCTGCCGCCGATGACGACGCCATCAAGGAGCTGGACGAGATGAAGAAGAGATTGAAGGAGATGGAGGAGGAAGCAGCTGCTCTTCGCGAAATGCAAGCCAAGGTAGAAAAGGAAATGGACGCCGTTCAAGGTTTACCTCCATCTCGAATTACCTTCGACTAA

Protein sequence

MEEEEHEVYGGEIPVEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMDAVQGLPPSRITFD

Homology

[Close]

BLAST of MELO3C007743 vs. NCBI nr
Match: XP_008440581.1 (PREDICTED: polyadenylate-binding protein 3-like [Cucumis melo])

HSP 1 Score: 139.4 bits (350), Expect = 1.2e-29
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MEEEEHEVYGGEIPVEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60
          MEEEEHEVYGGEIPVEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE
Sbjct: 1  MEEEEHEVYGGEIPVEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60

Query: 61 MDAVQGLPPSRITFD 76
          MDAVQGLPPSRITFD
Sbjct: 61 MDAVQGLPPSRITFD 75

[Close]

BLAST of MELO3C007743 vs. NCBI nr
Match: XP_038882558.1 (polyadenylate-binding protein 3-like isoform X1 [Benincasa hispida])

HSP 1 Score: 131.3 bits (329), Expect = 3.4e-27
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 1  MEEEEHEVYGGEIPVEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60
          M+EEEHEVYGGEIPVEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE
Sbjct: 1  MDEEEHEVYGGEIPVEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60

Query: 61 MDAVQGLPPSRITFD 76
          M AVQGLPPSR T D
Sbjct: 61 MGAVQGLPPSRTTLD 75

[Close]

BLAST of MELO3C007743 vs. NCBI nr
Match: KAA0036316.1 (polyadenylate-binding protein 2-like [Cucumis melo var. makuwa] >TYK12710.1 polyadenylate-binding protein 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 2.5e-22
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MEEEEHEVYGGEIPVEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60
          MEEEEHEVYGGEIPVEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE
Sbjct: 1  MEEEEHEVYGGEIPVEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60

Query: 61 MDAVQ 66
          M AVQ
Sbjct: 61 MGAVQ 65

[Close]

BLAST of MELO3C007743 vs. NCBI nr
Match: XP_038882559.1 (polyadenylate-binding protein 3-like isoform X2 [Benincasa hispida])

HSP 1 Score: 114.0 bits (284), Expect = 5.6e-22
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MEEEEHEVYGGEIPVEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60
          M+EEEHEVYGGEIPVEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE
Sbjct: 1  MDEEEHEVYGGEIPVEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60

Query: 61 MDAVQ 66
          M AVQ
Sbjct: 61 MGAVQ 65

[Close]

BLAST of MELO3C007743 vs. NCBI nr
Match: XP_004143458.1 (polyadenylate-binding protein 3 isoform X1 [Cucumis sativus] >KGN48735.1 hypothetical protein Csa_003260 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 7.3e-22
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 1  MEEEEHEVYGGEIPVEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60
          MEEEEHEVYGGEIPVEEGDIDMSA DDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE
Sbjct: 1  MEEEEHEVYGGEIPVEEGDIDMSATDDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60

Query: 61 MDAVQ 66
          M AVQ
Sbjct: 61 MGAVQ 65

[Close]

BLAST of MELO3C007743 vs. ExPASy Swiss-Prot
Match: Q9LX90 (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.0e-18
Identity = 55/71 (77.46%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 1  MEEEEHEVYGGEIP------VEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQ 60
          MEEEEHEVYGGEIP      V + DIDMSAAD+DA+ EL EMK+RLKEMEEEAAALREMQ
Sbjct: 1  MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 61 AKVEKEMDAVQ 66
          AKVEKEM A Q
Sbjct: 61 AKVEKEMGATQ 71

[Close]

BLAST of MELO3C007743 vs. ExPASy Swiss-Prot
Match: Q9FJN9 (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.7e-18
Identity = 54/73 (73.97%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 1  MEEEEHEVYGGEIP----------VEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAAL 60
          MEEEEHEVYGGEIP              D+DM+AADDDA+KELDEMKKRLKEME+EAAAL
Sbjct: 1  MEEEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDAVKELDEMKKRLKEMEDEAAAL 60

Query: 61 REMQAKVEKEMDA 64
          REMQAKVEKEM A
Sbjct: 61 REMQAKVEKEMGA 73

[Close]

BLAST of MELO3C007743 vs. ExPASy Swiss-Prot
Match: Q93VI4 (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.3e-09
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 2  EEEEHEVYGGEIP-VEEGDIDM-----------SAADDDAI------KELDEMKKRLKEM 61
          +E+EHEVYGGEIP  EEG++D            +AA D+ +      ++L++MKKR+KE+
Sbjct: 5  DEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEI 64

Query: 62 EEEAAALREMQAKVEKEMDAVQ 66
          EEEA ALREMQAK EK+M A Q
Sbjct: 65 EEEAGALREMQAKAEKDMGASQ 86

[Close]

BLAST of MELO3C007743 vs. ExPASy TrEMBL
Match: A0A1S3B1F6 (polyadenylate-binding protein 3-like OS=Cucumis melo OX=3656 GN=LOC103484956 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 6.0e-30
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MEEEEHEVYGGEIPVEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60
          MEEEEHEVYGGEIPVEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE
Sbjct: 1  MEEEEHEVYGGEIPVEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60

Query: 61 MDAVQGLPPSRITFD 76
          MDAVQGLPPSRITFD
Sbjct: 61 MDAVQGLPPSRITFD 75

[Close]

BLAST of MELO3C007743 vs. ExPASy TrEMBL
Match: A0A5A7T2C2 (Polyadenylate-binding protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002980 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.2e-22
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MEEEEHEVYGGEIPVEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60
          MEEEEHEVYGGEIPVEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE
Sbjct: 1  MEEEEHEVYGGEIPVEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60

Query: 61 MDAVQ 66
          M AVQ
Sbjct: 61 MGAVQ 65

[Close]

BLAST of MELO3C007743 vs. ExPASy TrEMBL
Match: A0A0A0KG83 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G499790 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.5e-22
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 1  MEEEEHEVYGGEIPVEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60
          MEEEEHEVYGGEIPVEEGDIDMSA DDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE
Sbjct: 1  MEEEEHEVYGGEIPVEEGDIDMSATDDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60

Query: 61 MDAVQ 66
          M AVQ
Sbjct: 61 MGAVQ 65

[Close]

BLAST of MELO3C007743 vs. ExPASy TrEMBL
Match: A0A6J1BTY4 (polyadenylate-binding protein 3-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005528 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.9e-22
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 1  MEEEEHEVYGGEIPVEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60
          MEEEEHEVYGGEIPVEE D+DMSAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE
Sbjct: 1  MEEEEHEVYGGEIPVEEADVDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60

Query: 61 MDAVQ 66
          M AVQ
Sbjct: 61 MGAVQ 65

[Close]

BLAST of MELO3C007743 vs. ExPASy TrEMBL
Match: A0A6J1HIK8 (polyadenylate-binding protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111463324 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.9e-22
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MEEEEHEVYGGEIPVEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60
          M+EEEHEVYGGEIPVEEGD+DM+AADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE
Sbjct: 1  MDEEEHEVYGGEIPVEEGDVDMTAADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKE 60

Query: 61 MDAVQ 66
          M AVQ
Sbjct: 61 MGAVQ 65

[Close]

BLAST of MELO3C007743 vs. TAIR 10
Match: AT5G10350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 92.0 bits (227), Expect = 2.1e-19
Identity = 55/71 (77.46%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 1  MEEEEHEVYGGEIP------VEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQ 60
          MEEEEHEVYGGEIP      V + DIDMSAAD+DA+ EL EMK+RLKEMEEEAAALREMQ
Sbjct: 1  MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 61 AKVEKEMDAVQ 66
          AKVEKEM A Q
Sbjct: 61 AKVEKEMGATQ 71

[Close]

BLAST of MELO3C007743 vs. TAIR 10
Match: AT5G10350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 92.0 bits (227), Expect = 2.1e-19
Identity = 55/71 (77.46%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 1  MEEEEHEVYGGEIP------VEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAALREMQ 60
          MEEEEHEVYGGEIP      V + DIDMSAAD+DA+ EL EMK+RLKEMEEEAAALREMQ
Sbjct: 1  MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 61 AKVEKEMDAVQ 66
          AKVEKEM A Q
Sbjct: 61 AKVEKEMGATQ 71

[Close]

BLAST of MELO3C007743 vs. TAIR 10
Match: AT5G65260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 90.9 bits (224), Expect = 4.7e-19
Identity = 54/73 (73.97%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 1  MEEEEHEVYGGEIP----------VEEGDIDMSAADDDAIKELDEMKKRLKEMEEEAAAL 60
          MEEEEHEVYGGEIP              D+DM+AADDDA+KELDEMKKRLKEME+EAAAL
Sbjct: 1  MEEEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDAVKELDEMKKRLKEMEDEAAAL 60

Query: 61 REMQAKVEKEMDA 64
          REMQAKVEKEM A
Sbjct: 61 REMQAKVEKEMGA 73

[Close]

BLAST of MELO3C007743 vs. TAIR 10
Match: AT5G51120.2 (polyadenylate-binding protein 1 )

HSP 1 Score: 65.9 bits (159), Expect = 1.6e-11
Identity = 44/84 (52.38%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 2  EEEEHEVYGGEIP-VEEGDIDM-----------SAADDDAI------KELDEMKKRLKEM 61
          +E+EHEVYGGEIP  EEG++D            +AA D+ +      ++L++MKKR+KE+
Sbjct: 5  DEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEI 64

Query: 62 EEEAAALREMQAKVEKEMDAVQGL 68
          EEEA ALREMQAK EK+M A QGL
Sbjct: 65 EEEAGALREMQAKAEKDMGASQGL 88

[Close]

BLAST of MELO3C007743 vs. TAIR 10
Match: AT5G51120.1 (polyadenylate-binding protein 1 )

HSP 1 Score: 61.6 bits (148), Expect = 3.1e-10
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 2  EEEEHEVYGGEIP-VEEGDIDM-----------SAADDDAI------KELDEMKKRLKEM 61
          +E+EHEVYGGEIP  EEG++D            +AA D+ +      ++L++MKKR+KE+
Sbjct: 5  DEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEI 64

Query: 62 EEEAAALREMQAKVEKEMDAVQ 66
          EEEA ALREMQAK EK+M A Q
Sbjct: 65 EEEAGALREMQAKAEKDMGASQ 86

The following BLAST results are available for this feature:

BLAST of MELO3C007743 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008440581.1	1.2e-29	100.00	PREDICTED: polyadenylate-binding protein 3-like [Cucumis melo]	[more]
XP_038882558.1	3.4e-27	94.67	polyadenylate-binding protein 3-like isoform X1 [Benincasa hispida]	[more]
KAA0036316.1	2.5e-22	98.46	polyadenylate-binding protein 2-like [Cucumis melo var. makuwa] >TYK12710.1 poly...	[more]
XP_038882559.1	5.6e-22	96.92	polyadenylate-binding protein 3-like isoform X2 [Benincasa hispida]	[more]
XP_004143458.1	7.3e-22	96.92	polyadenylate-binding protein 3 isoform X1 [Cucumis sativus] >KGN48735.1 hypothe...	[more]

BLAST of MELO3C007743 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LX90	3.0e-18	77.46	Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV...	[more]
Q9FJN9	6.7e-18	73.97	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV...	[more]
Q93VI4	4.3e-09	51.22	Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV...	[more]

BLAST of MELO3C007743 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B1F6	6.0e-30	100.00	polyadenylate-binding protein 3-like OS=Cucumis melo OX=3656 GN=LOC103484956 PE=...	[more]
A0A5A7T2C2	1.2e-22	98.46	Polyadenylate-binding protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0KG83	3.5e-22	96.92	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G499790 PE=4 SV...	[more]
A0A6J1BTY4	7.9e-22	95.38	polyadenylate-binding protein 3-like isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1HIK8	7.9e-22	93.85	polyadenylate-binding protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC1114633...	[more]

BLAST of MELO3C007743 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10350.2	2.1e-19	77.46	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G10350.1	2.1e-19	77.46	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G65260.1	4.7e-19	73.97	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G51120.2	1.6e-11	52.38	polyadenylate-binding protein 1	[more]
AT5G51120.1	3.1e-10	51.22	polyadenylate-binding protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 26..63
None	No IPR available	PANTHER	PTHR23236:SF80	POLYADENYLATE-BINDING PROTEIN 3	coord: 1..66
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C007743.1	MELO3C007743.1	mRNA