MELO3C007519.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C007519.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Mitochondrial transcription termination factor family protein
Location	chr08: 3304891 .. 3306012 (-)
RNA-Seq Expression	MELO3C007519.jh1
Synteny	MELO3C007519.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGACCTTGTGAAGGTCATTAATTGTCGTCCCTGGTTCCTCGAGTGTCCGATCAACAACTTCCATGAGCGGATTGAGTTTTTCTTGCAAATGTTTGAATCTAAAGAAGTTCTTGTTAAAGCCATTTTAAGAGACCCCTCAAACCTGTACTTTCTCAATATGAAGAAATAGGTCTTAGTAAAAAGGATTTGGTTTGCATGCTTCTATTATACCCCACATTGATTCCAAGAACTTCATTCAATAATGAGAAGATGGAATTCATACAAAAAACGGGGCTCTCACAGGGTGACAAGTTGTTCAAATACGTCGTTACAATCATTTGTATCTCACGACTTGAAACAATTCGTCAAAAAGTAGCCAATTTGAAGAAGTTTGGTTTCACAGAAGATGAGAAATTTGCTCTGATTCGACGATGTCCCCTTATCTTGACTCTATCAGTCGATAAAGTGCAAAGGAACATGACTTTCATCTTGTACTCGATGGAGTTACCTGCTAAAGTGGTTCTTCACTATCCATTTCTATTACGTTTTAACCTGGAAGCTGTCCGGATGCTTCTCGCAGGGAAAGTGGAGGAAATGGGTCTCCATCTGCAGATCAAAGGCCGTTCAATTCTTAGTGCCCTTAGAATGCCAGAGAACAGATTCTTGAAGAAATTTGTTTACAGTCAACCACAAGATGTTGCTGATGAGTTGATGCAGTTCTATCAACGTGCAAAAGCCATTAAGTGTTTGGCAGAAACCTCGAGGAAGAACCGTAATAGACGAAGACGATTGAACGTGCGAAAAACAGCAACGGAACAATTAAGAACTGCTTTGTTTCCAATCAAGATTACAGATGATATTGAAAATGGCAACTGACATTAATGGTCATCAGTTAATTAATTGTTACGAGGCTTCTTGGTAGTATGAATTATTAGTTTCTTTCATTTATTTTAAAACGGAATGTCTAAAGTTCTAATGGTGGCCAGACATTTACAAGTAAGGATCTCAAAATGGAAGGGGATTGCAGAGTCACATGGCTTTCAGGAATCAAAAGGCCTAACTACAAGGAAAAATGTAAAATGTTGAACTACTGATGTATGAAAATTCCATTATCTATACTTCAAGATTTTATTTTGTGCTAA

mRNA sequence

CCGACCTTGTGAAGGTCATTAATTGTCGTCCCTGGTTCCTCGAGTGTCCGATCAACAACTTCCATGAGCGGATTGAGTTTTTCTTGCAAATGTTTGAATCTAAAGAAGTTCTTGTTAAAGCCATTTTAAGAGACCCCTCAAACCTGTACTTTCTCAATATGAAGAAATAGGTCTTAGTAAAAAGGATTTGGTTTGCATGCTTCTATTATACCCCACATTGATTCCAAGAACTTCATTCAATAATGAGAAGATGGAATTCATACAAAAAACGGGGCTCTCACAGGGTGACAAGTTGTTCAAATACGTCGTTACAATCATTTGTATCTCACGACTTGAAACAATTCGTCAAAAAGTAGCCAATTTGAAGAAGTTTGGTTTCACAGAAGATGAGAAATTTGCTCTGATTCGACGATGTCCCCTTATCTTGACTCTATCAGTCGATAAAGTGCAAAGGAACATGACTTTCATCTTGTACTCGATGGAGTTACCTGCTAAAGTGGTTCTTCACTATCCATTTCTATTACGTTTTAACCTGGAAGCTGTCCGGATGCTTCTCGCAGGGAAAGTGGAGGAAATGGGTCTCCATCTGCAGATCAAAGGCCGTTCAATTCTTAGTGCCCTTAGAATGCCAGAGAACAGATTCTTGAAGAAATTTGTTTACAGTCAACCACAAGATGTTGCTGATGAGTTGATGCAGTTCTATCAACGTGCAAAAGCCATTAAGTGTTTGGCAGAAACCTCGAGGAAGAACCGTAATAGACGAAGACGATTGAACGTGCGAAAAACAGCAACGGAACAATTAAGAACTGCTTTGTTTCCAATCAAGATTACAGATGATATTGAAAATGGCAACTGACATTAATGGTCATCAGTTAATTAATTGTTACGAGGCTTCTTGGTAGTATGAATTATTAGTTTCTTTCATTTATTTTAAAACGGAATGTCTAAAGTTCTAATGGTGGCCAGACATTTACAAGTAAGGATCTCAAAATGGAAGGGGATTGCAGAGTCACATGGCTTTCAGGAATCAAAAGGCCTAACTACAAGGAAAAATGTAAAATGTTGAACTACTGATGTATGAAAATTCCATTATCTATACTTCAAGATTTTATTTTGTGCTAA

Coding sequence (CDS)

ATGCTTCTATTATACCCCACATTGATTCCAAGAACTTCATTCAATAATGAGAAGATGGAATTCATACAAAAAACGGGGCTCTCACAGGGTGACAAGTTGTTCAAATACGTCGTTACAATCATTTGTATCTCACGACTTGAAACAATTCGTCAAAAAGTAGCCAATTTGAAGAAGTTTGGTTTCACAGAAGATGAGAAATTTGCTCTGATTCGACGATGTCCCCTTATCTTGACTCTATCAGTCGATAAAGTGCAAAGGAACATGACTTTCATCTTGTACTCGATGGAGTTACCTGCTAAAGTGGTTCTTCACTATCCATTTCTATTACGTTTTAACCTGGAAGCTGTCCGGATGCTTCTCGCAGGGAAAGTGGAGGAAATGGGTCTCCATCTGCAGATCAAAGGCCGTTCAATTCTTAGTGCCCTTAGAATGCCAGAGAACAGATTCTTGAAGAAATTTGTTTACAGTCAACCACAAGATGTTGCTGATGAGTTGATGCAGTTCTATCAACGTGCAAAAGCCATTAAGTGTTTGGCAGAAACCTCGAGGAAGAACCGTAATAGACGAAGACGATTGAACGTGCGAAAAACAGCAACGGAACAATTAAGAACTGCTTTGTTTCCAATCAAGATTACAGATGATATTGAAAATGGCAACTGA

Protein sequence

MLLLYPTLIPRTSFNNEKMEFIQKTGLSQGDKLFKYVVTIICISRLETIRQKVANLKKFGFTEDEKFALIRRCPLILTLSVDKVQRNMTFILYSMELPAKVVLHYPFLLRFNLEAVRMLLAGKVEEMGLHLQIKGRSILSALRMPENRFLKKFVYSQPQDVADELMQFYQRAKAIKCLAETSRKNRNRRRRLNVRKTATEQLRTALFPIKITDDIENGN

Homology

[Close]

BLAST of MELO3C007519.jh1 vs. NCBI nr
Match: TYK12925.1 (Mitochondrial transcription termination factor family protein [Cucumis melo var. makuwa])

HSP 1 Score: 420 bits (1080), Expect = 6.53e-148
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 1   MLLLYPTLIPRTSFNNEKMEFIQKTGLSQGDKLFKYVVTIICISRLETIRQKVANLKKFG 60
           MLLLYPTLIPRTSFNNEKMEFIQKTGLSQGDKLFKYVVTIICISRLETIRQKVANLKKFG
Sbjct: 1   MLLLYPTLIPRTSFNNEKMEFIQKTGLSQGDKLFKYVVTIICISRLETIRQKVANLKKFG 60

Query: 61  FTEDEKFALIRRCPLILTLSVDKVQRNMTFILYSMELPAKVVLHYPFLLRFNLEAVRMLL 120
           FTEDEKFALIRRCPLILTLSVDKVQRNMTFILYSMELPAKVVLHYPFLLRFNLEAVRMLL
Sbjct: 61  FTEDEKFALIRRCPLILTLSVDKVQRNMTFILYSMELPAKVVLHYPFLLRFNLEAVRMLL 120

Query: 121 AGKVEEMGLHLQIKGRSILSALRMPENRFLKKFVYSQPQDVADELMQFYQRAKAIKCLAE 180
           AGKVEEMGLHLQIKGRSILSALRMPENRFLKKFVYSQPQDVADELMQFYQRAKAIKCLAE
Sbjct: 121 AGKVEEMGLHLQIKGRSILSALRMPENRFLKKFVYSQPQDVADELMQFYQRAKAIKCLAE 180

Query: 181 TSRKNRNRRRRLNVRKTATEQLRTALFPIKITDDIENGN 219
           TSRKNRNRRRRLNVRKTATEQLRTALFPIKITDDIENGN
Sbjct: 181 TSRKNRNRRRRLNVRKTATEQLRTALFPIKITDDIENGN 219

[Close]

BLAST of MELO3C007519.jh1 vs. NCBI nr
Match: XP_008440198.1 (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103484733 [Cucumis melo])

HSP 1 Score: 420 bits (1080), Expect = 2.85e-145
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 1   MLLLYPTLIPRTSFNNEKMEFIQKTGLSQGDKLFKYVVTIICISRLETIRQKVANLKKFG 60
           MLLLYPTLIPRTSFNNEKMEFIQKTGLSQGDKLFKYVVTIICISRLETIRQKVANLKKFG
Sbjct: 173 MLLLYPTLIPRTSFNNEKMEFIQKTGLSQGDKLFKYVVTIICISRLETIRQKVANLKKFG 232

Query: 61  FTEDEKFALIRRCPLILTLSVDKVQRNMTFILYSMELPAKVVLHYPFLLRFNLEAVRMLL 120
           FTEDEKFALIRRCPLILTLSVDKVQRNMTFILYSMELPAKVVLHYPFLLRFNLEAVRMLL
Sbjct: 233 FTEDEKFALIRRCPLILTLSVDKVQRNMTFILYSMELPAKVVLHYPFLLRFNLEAVRMLL 292

Query: 121 AGKVEEMGLHLQIKGRSILSALRMPENRFLKKFVYSQPQDVADELMQFYQRAKAIKCLAE 180
           AGKVEEMGLHLQIKGRSILSALRMPENRFLKKFVYSQPQDVADELMQFYQRAKAIKCLAE
Sbjct: 293 AGKVEEMGLHLQIKGRSILSALRMPENRFLKKFVYSQPQDVADELMQFYQRAKAIKCLAE 352

Query: 181 TSRKNRNRRRRLNVRKTATEQLRTALFPIKITDDIENGN 219
           TSRKNRNRRRRLNVRKTATEQLRTALFPIKITDDIENGN
Sbjct: 353 TSRKNRNRRRRLNVRKTATEQLRTALFPIKITDDIENGN 391

[Close]

BLAST of MELO3C007519.jh1 vs. NCBI nr
Match: XP_038881817.1 (uncharacterized protein LOC120073205, partial [Benincasa hispida])

HSP 1 Score: 273 bits (698), Expect = 4.58e-87
Identity = 146/187 (78.07%), Postives = 164/187 (87.70%), Query Frame = 0


Query: 1   MLLLYPTLIPRTSFNNEKMEFIQKTGLSQGDKLFKYVVTIICISRLETIRQKVANLKKFG 60
           ML+  PTLIPRTSFN+EKME+IQKTGLSQGDK+FKYVVTII ISRLETIR KVANL+KFG
Sbjct: 218 MLISRPTLIPRTSFNDEKMEYIQKTGLSQGDKMFKYVVTIIGISRLETIRHKVANLEKFG 277

Query: 61  FTEDEKFALIRRCPLILTLSVDKVQRNMTFILYSMELPAKVVLHYPFLLRFNLEAV---R 120
           FTEDE FAL+ R PLILTLSVDKVQRNMTFIL +++LPAKV+L+YPFLL FNL+AV   R
Sbjct: 278 FTEDEIFALLGRSPLILTLSVDKVQRNMTFILCTLKLPAKVILNYPFLLYFNLDAVLKPR 337

Query: 121 MLLAGKVEEMGLHLQIKGRSILSALRMPENRFLKKFVYSQPQDVADELMQFYQRAKAIKC 180
           + L GK+EEMGLH+QIKG  +L ALRM E RFLKKF+YSQP+DVADELMQFYQ AK IK 
Sbjct: 338 VHLLGKMEEMGLHMQIKGHPLLRALRMTEKRFLKKFIYSQPKDVADELMQFYQIAKGIKR 397

Query: 181 LAETSRK 184
           L ETSRK
Sbjct: 398 LGETSRK 404

[Close]

BLAST of MELO3C007519.jh1 vs. NCBI nr
Match: XP_022158121.1 (uncharacterized protein LOC111024679 [Momordica charantia])

HSP 1 Score: 268 bits (685), Expect = 1.67e-85
Identity = 142/188 (75.53%), Postives = 168/188 (89.36%), Query Frame = 0


Query: 1   MLLLYPTLIPRTSFNNEKMEFIQKTGLSQGDKLFKYVVTIICISRLETIRQKVANLKKFG 60
           ML+  PTLIPR+SFN+EK+E+IQKTGLS+GDK++KYVVTI+ ISRLETIRQKVANL+KFG
Sbjct: 187 MLISRPTLIPRSSFNDEKLEYIQKTGLSKGDKMYKYVVTIMGISRLETIRQKVANLEKFG 246

Query: 61  FTEDEKFALIRRCPLILTLSVDKVQRNMTFILYSMELPAKVVLHYPFLLRFNLEAV---R 120
           FT+DE FAL+ R PLILTLSVDKVQRNMTFIL +++LPAKV+L+YPFLL FNLEAV   R
Sbjct: 247 FTDDEIFALLGRSPLILTLSVDKVQRNMTFILCTLKLPAKVILNYPFLLYFNLEAVLKPR 306

Query: 121 MLLAGKVEEMGLHLQIKGRSILSALRMPENRFLKKFVYSQPQDVADELMQFYQRAKAIKC 180
           +LL+GK+EEMGLHLQIKGR++L ALRM E RFLK FV SQP+ VADELM+FYQ AK +K 
Sbjct: 307 VLLSGKMEEMGLHLQIKGRAMLRALRMTEKRFLKTFVNSQPKVVADELMEFYQSAKGVKR 366

Query: 181 LAETSRKN 185
           LAETS+KN
Sbjct: 367 LAETSKKN 374

[Close]

BLAST of MELO3C007519.jh1 vs. NCBI nr
Match: XP_022133358.1 (uncharacterized protein LOC111005954 [Momordica charantia])

HSP 1 Score: 263 bits (673), Expect = 1.09e-83
Identity = 139/191 (72.77%), Postives = 168/191 (87.96%), Query Frame = 0


Query: 1   MLLLYPTLIPRTSFNNEKMEFIQKTGLSQGDKLFKYVVTIICISRLETIRQKVANLKKFG 60
           ML+  P+LIPR+SFN+EK+++IQKTGLS+GDK++KYVVTI+ ISRLETIRQKVANL+KFG
Sbjct: 187 MLISRPSLIPRSSFNDEKLKYIQKTGLSKGDKMYKYVVTIMGISRLETIRQKVANLEKFG 246

Query: 61  FTEDEKFALIRRCPLILTLSVDKVQRNMTFILYSMELPAKVVLHYPFLLRFNLEAV---R 120
           FT+DE FAL+ R PLILTLSVDKVQRNMTFIL +++LPAKV+L YPFL  FNL+A+   R
Sbjct: 247 FTDDEIFALLGRSPLILTLSVDKVQRNMTFILCTLKLPAKVILSYPFLFYFNLDAILKPR 306

Query: 121 MLLAGKVEEMGLHLQIKGRSILSALRMPENRFLKKFVYSQPQDVADELMQFYQRAKAIKC 180
           +LL+GK+EEMGLHLQIKG ++L ALRM E RFLK FV SQP+DVADELM+FYQ AK IK 
Sbjct: 307 VLLSGKMEEMGLHLQIKGHAMLRALRMTEKRFLKTFVNSQPKDVADELMEFYQSAKGIKR 366

Query: 181 LAETSRKNRNR 188
           LAETS+KN +R
Sbjct: 367 LAETSKKNCSR 377

[Close]

BLAST of MELO3C007519.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CMY9 (Mitochondrial transcription termination factor family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005200 PE=3 SV=1)

HSP 1 Score: 420 bits (1080), Expect = 3.16e-148
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 1   MLLLYPTLIPRTSFNNEKMEFIQKTGLSQGDKLFKYVVTIICISRLETIRQKVANLKKFG 60
           MLLLYPTLIPRTSFNNEKMEFIQKTGLSQGDKLFKYVVTIICISRLETIRQKVANLKKFG
Sbjct: 1   MLLLYPTLIPRTSFNNEKMEFIQKTGLSQGDKLFKYVVTIICISRLETIRQKVANLKKFG 60

Query: 61  FTEDEKFALIRRCPLILTLSVDKVQRNMTFILYSMELPAKVVLHYPFLLRFNLEAVRMLL 120
           FTEDEKFALIRRCPLILTLSVDKVQRNMTFILYSMELPAKVVLHYPFLLRFNLEAVRMLL
Sbjct: 61  FTEDEKFALIRRCPLILTLSVDKVQRNMTFILYSMELPAKVVLHYPFLLRFNLEAVRMLL 120

Query: 121 AGKVEEMGLHLQIKGRSILSALRMPENRFLKKFVYSQPQDVADELMQFYQRAKAIKCLAE 180
           AGKVEEMGLHLQIKGRSILSALRMPENRFLKKFVYSQPQDVADELMQFYQRAKAIKCLAE
Sbjct: 121 AGKVEEMGLHLQIKGRSILSALRMPENRFLKKFVYSQPQDVADELMQFYQRAKAIKCLAE 180

Query: 181 TSRKNRNRRRRLNVRKTATEQLRTALFPIKITDDIENGN 219
           TSRKNRNRRRRLNVRKTATEQLRTALFPIKITDDIENGN
Sbjct: 181 TSRKNRNRRRRLNVRKTATEQLRTALFPIKITDDIENGN 219

[Close]

BLAST of MELO3C007519.jh1 vs. ExPASy TrEMBL
Match: A0A1S3B056 (LOW QUALITY PROTEIN: uncharacterized protein LOC103484733 OS=Cucumis melo OX=3656 GN=LOC103484733 PE=3 SV=1)

HSP 1 Score: 420 bits (1080), Expect = 1.38e-145
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 1   MLLLYPTLIPRTSFNNEKMEFIQKTGLSQGDKLFKYVVTIICISRLETIRQKVANLKKFG 60
           MLLLYPTLIPRTSFNNEKMEFIQKTGLSQGDKLFKYVVTIICISRLETIRQKVANLKKFG
Sbjct: 173 MLLLYPTLIPRTSFNNEKMEFIQKTGLSQGDKLFKYVVTIICISRLETIRQKVANLKKFG 232

Query: 61  FTEDEKFALIRRCPLILTLSVDKVQRNMTFILYSMELPAKVVLHYPFLLRFNLEAVRMLL 120
           FTEDEKFALIRRCPLILTLSVDKVQRNMTFILYSMELPAKVVLHYPFLLRFNLEAVRMLL
Sbjct: 233 FTEDEKFALIRRCPLILTLSVDKVQRNMTFILYSMELPAKVVLHYPFLLRFNLEAVRMLL 292

Query: 121 AGKVEEMGLHLQIKGRSILSALRMPENRFLKKFVYSQPQDVADELMQFYQRAKAIKCLAE 180
           AGKVEEMGLHLQIKGRSILSALRMPENRFLKKFVYSQPQDVADELMQFYQRAKAIKCLAE
Sbjct: 293 AGKVEEMGLHLQIKGRSILSALRMPENRFLKKFVYSQPQDVADELMQFYQRAKAIKCLAE 352

Query: 181 TSRKNRNRRRRLNVRKTATEQLRTALFPIKITDDIENGN 219
           TSRKNRNRRRRLNVRKTATEQLRTALFPIKITDDIENGN
Sbjct: 353 TSRKNRNRRRRLNVRKTATEQLRTALFPIKITDDIENGN 391

[Close]

BLAST of MELO3C007519.jh1 vs. ExPASy TrEMBL
Match: A0A6J1E035 (uncharacterized protein LOC111024679 OS=Momordica charantia OX=3673 GN=LOC111024679 PE=3 SV=1)

HSP 1 Score: 268 bits (685), Expect = 8.10e-86
Identity = 142/188 (75.53%), Postives = 168/188 (89.36%), Query Frame = 0


Query: 1   MLLLYPTLIPRTSFNNEKMEFIQKTGLSQGDKLFKYVVTIICISRLETIRQKVANLKKFG 60
           ML+  PTLIPR+SFN+EK+E+IQKTGLS+GDK++KYVVTI+ ISRLETIRQKVANL+KFG
Sbjct: 187 MLISRPTLIPRSSFNDEKLEYIQKTGLSKGDKMYKYVVTIMGISRLETIRQKVANLEKFG 246

Query: 61  FTEDEKFALIRRCPLILTLSVDKVQRNMTFILYSMELPAKVVLHYPFLLRFNLEAV---R 120
           FT+DE FAL+ R PLILTLSVDKVQRNMTFIL +++LPAKV+L+YPFLL FNLEAV   R
Sbjct: 247 FTDDEIFALLGRSPLILTLSVDKVQRNMTFILCTLKLPAKVILNYPFLLYFNLEAVLKPR 306

Query: 121 MLLAGKVEEMGLHLQIKGRSILSALRMPENRFLKKFVYSQPQDVADELMQFYQRAKAIKC 180
           +LL+GK+EEMGLHLQIKGR++L ALRM E RFLK FV SQP+ VADELM+FYQ AK +K 
Sbjct: 307 VLLSGKMEEMGLHLQIKGRAMLRALRMTEKRFLKTFVNSQPKVVADELMEFYQSAKGVKR 366

Query: 181 LAETSRKN 185
           LAETS+KN
Sbjct: 367 LAETSKKN 374

[Close]

BLAST of MELO3C007519.jh1 vs. ExPASy TrEMBL
Match: A0A6J1BYX5 (uncharacterized protein LOC111005954 OS=Momordica charantia OX=3673 GN=LOC111005954 PE=3 SV=1)

HSP 1 Score: 263 bits (673), Expect = 5.26e-84
Identity = 139/191 (72.77%), Postives = 168/191 (87.96%), Query Frame = 0


Query: 1   MLLLYPTLIPRTSFNNEKMEFIQKTGLSQGDKLFKYVVTIICISRLETIRQKVANLKKFG 60
           ML+  P+LIPR+SFN+EK+++IQKTGLS+GDK++KYVVTI+ ISRLETIRQKVANL+KFG
Sbjct: 187 MLISRPSLIPRSSFNDEKLKYIQKTGLSKGDKMYKYVVTIMGISRLETIRQKVANLEKFG 246

Query: 61  FTEDEKFALIRRCPLILTLSVDKVQRNMTFILYSMELPAKVVLHYPFLLRFNLEAV---R 120
           FT+DE FAL+ R PLILTLSVDKVQRNMTFIL +++LPAKV+L YPFL  FNL+A+   R
Sbjct: 247 FTDDEIFALLGRSPLILTLSVDKVQRNMTFILCTLKLPAKVILSYPFLFYFNLDAILKPR 306

Query: 121 MLLAGKVEEMGLHLQIKGRSILSALRMPENRFLKKFVYSQPQDVADELMQFYQRAKAIKC 180
           +LL+GK+EEMGLHLQIKG ++L ALRM E RFLK FV SQP+DVADELM+FYQ AK IK 
Sbjct: 307 VLLSGKMEEMGLHLQIKGHAMLRALRMTEKRFLKTFVNSQPKDVADELMEFYQSAKGIKR 366

Query: 181 LAETSRKNRNR 188
           LAETS+KN +R
Sbjct: 367 LAETSKKNCSR 377

[Close]

BLAST of MELO3C007519.jh1 vs. ExPASy TrEMBL
Match: A0A6J1IQK9 (uncharacterized protein LOC111478530 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478530 PE=3 SV=1)

HSP 1 Score: 259 bits (663), Expect = 1.47e-82
Identity = 139/191 (72.77%), Postives = 162/191 (84.82%), Query Frame = 0


Query: 1   MLLLYPTLIPRTSFNNEKMEFIQKTGLSQGDKLFKYVVTIICISRLETIRQKVANLKKFG 60
           MLL  PTLIPR+SFN+EKM +IQKTGL+ GDK++KY+VTII ISRLETIRQKVANL+KFG
Sbjct: 182 MLLSRPTLIPRSSFNDEKMGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVANLEKFG 241

Query: 61  FTEDEKFALIRRCPLILTLSVDKVQRNMTFILYSMELPAKVVLHYPFLLRFNLEAV---R 120
           FTEDE F L+ R PLILTLSVDKVQRNMTFIL ++ LPAK++L+YPFL+  NLE V   R
Sbjct: 242 FTEDETFTLLGRSPLILTLSVDKVQRNMTFILCTLRLPAKIILNYPFLVYLNLEEVLKPR 301

Query: 121 MLLAGKVEEMGLHLQIKGRSILSALRMPENRFLKKFVYSQPQDVADELMQFYQRAKAIKC 180
           +LL+ K+EEMGLH+QIKG  +L ALRM E RFLK+FV SQP+DVADELMQFYQ AK IK 
Sbjct: 302 VLLSEKMEEMGLHIQIKGGLMLRALRMTEKRFLKRFVNSQPKDVADELMQFYQSAKGIKR 361

Query: 181 LAETSRKNRNR 188
           LAETSRK+  R
Sbjct: 362 LAETSRKSHRR 372

[Close]

BLAST of MELO3C007519.jh1 vs. TAIR 10
Match: AT1G79220.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 191.4 bits (485), Expect = 7.5e-49
Identity = 103/187 (55.08%), Postives = 139/187 (74.33%), Query Frame = 0


Query: 1   MLLLYPTLIPRTSFNNEKMEFIQKTGLSQGDKLFKYVVTIICISRLETIRQKVANLKKFG 60
           ML+  PTLIPRT+FNNEK E+I+KTG+++  K+FKYV  II +SR+ETI +KV NL+KFG
Sbjct: 205 MLISRPTLIPRTNFNNEKFEYIEKTGVTRESKMFKYVAVIIGVSRMETIEEKVRNLEKFG 264

Query: 61  FTEDEKFALIRRCPLILTLSVDKVQRNMTFILYSMELPAKVVLHYPFLLRFNLEA---VR 120
           F+E+E + L  +CP++L+LSV+KVQRNMTF++ SM+LPA  V+ +P LL  NLE+    R
Sbjct: 265 FSEEEIWHLYGKCPILLSLSVEKVQRNMTFVIASMKLPAHSVVKHPCLLLLNLESRLKPR 324

Query: 121 MLLAGKVEEMGLHLQIKGRSILSALRMPENRFLKKFVYSQPQDVADELMQFYQRAKAIKC 180
             L  +V EM L   IK  SI  A+RM E RFLK +V   PQD+A ELM+FY+++K +K 
Sbjct: 325 ADLVKRVLEMRLKPLIKEVSIFRAVRMSEKRFLKVYVMCHPQDIATELMEFYEKSKNMKR 384

Query: 181 LAETSRK 185
           LAE S+K
Sbjct: 385 LAEKSKK 391

[Close]

BLAST of MELO3C007519.jh1 vs. TAIR 10
Match: AT5G64950.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 56.2 bits (134), Expect = 3.8e-08
Identity = 42/150 (28.00%), Postives = 74/150 (49.33%), Query Frame = 0


Query: 26  GLSQGDKLFKYVVTIICISRLETIRQKVANLKKFGFTEDEKFALIRRCPLILTLSVDKVQ 85
           G +   ++  + V  +     +T  +KV      GF+EDE   +IRR P ++  S DK+ 
Sbjct: 227 GFTLNSRMLVHAVISLSSLSEKTFDRKVKLFMANGFSEDEITDIIRRSPGLIRCSEDKLT 286

Query: 86  RNMTFILYSMELPAKVVLHYPFLLRFNLE---AVRMLLAGKVEEMGLHL--QIKGRSILS 145
               F L  M L  + +   P +L +NLE     R+ +   + E GL L  + K ++++ 
Sbjct: 287 LGFEFYLKRMGLEREALAKRPCVLSYNLEKRVIPRLKVLQILREKGLLLKEEKKKKNMVG 346

Query: 146 ALRMPENRFLKKFVYSQPQDVADELMQFYQ 171
            + M E  FL+K+V     ++A+EL+  Y+
Sbjct: 347 IVEMTEEAFLEKYVVRFGDEIAEELLVAYK 376

[Close]

BLAST of MELO3C007519.jh1 vs. TAIR 10
Match: AT1G62150.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.5e-04
Identity = 35/159 (22.01%), Postives = 72/159 (45.28%), Query Frame = 0


Query: 17  EKMEFIQKTGLSQGDKLFKYVVTIICISRLE-TIRQKVANLKKFGFTEDEKFALIRRCPL 76
           +  E +++ GL + + L  +    +C+   E  I   +      GF+ DE   +++  P 
Sbjct: 302 QTFEALKRCGLCEDEVLSVFKKNPLCLRASEQQILNSMETFIGLGFSRDEFVMMVKCLPQ 361

Query: 77  ILTLSVDKVQRNMTFILYSMELPAKVVLHYPFLLRFNLE---AVRMLLAGKVEEMGLHLQ 136
            +  S + V++   F++  M  P KV+  +P +L +++E     R  +   +   GL L 
Sbjct: 362 CIGYSAEMVKKKTEFVVKKMNWPLKVITLFPQVLGYSMEKRTVPRCNVIKALMSKGL-LG 421

Query: 137 IKGRSILSALRMPENRFLKKFVYSQPQDVADELMQFYQR 172
            +   + S L   +  FLK++V    + +  ELM  + +
Sbjct: 422 SELPPMASVLACTDQTFLKRYVVEHDEKLVLELMSIFNQ 459

[Close]

BLAST of MELO3C007519.jh1 vs. TAIR 10
Match: AT1G78930.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 42.4 bits (98), Expect = 5.6e-04
Identity = 29/101 (28.71%), Postives = 52/101 (51.49%), Query Frame = 0


Query: 17  EKMEFIQKTGLS--QGDKLFKYVVTIICISRLETIRQKVANLKKFGFTEDEKFALIRRCP 76
           +K+ F+ + G+S     ++ K     +     +T+  ++  L + G +E E   +IR+  
Sbjct: 444 KKLIFLTRFGVSTTHFPRIIKKYPEFLIYDADKTVLPRLKYLMEIGISEREIAFMIRKFS 503

Query: 77  LILTLSVDKVQR-NMTFILYSMELPAKVVLHYPFLLRFNLE 115
            IL  S+DKV R    F++ SME P + V+ YP    ++LE
Sbjct: 504 PILGYSIDKVLRPKFEFLVNSMEKPVREVIEYPRYFSYSLE 544

The following BLAST results are available for this feature:

BLAST of MELO3C007519.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK12925.1	6.53e-148	100.00	Mitochondrial transcription termination factor family protein [Cucumis melo var....	[more]
XP_008440198.1	2.85e-145	100.00	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103484733 [Cucumis me...	[more]
XP_038881817.1	4.58e-87	78.07	uncharacterized protein LOC120073205, partial [Benincasa hispida]	[more]
XP_022158121.1	1.67e-85	75.53	uncharacterized protein LOC111024679 [Momordica charantia]	[more]
XP_022133358.1	1.09e-83	72.77	uncharacterized protein LOC111005954 [Momordica charantia]	[more]

BLAST of MELO3C007519.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C007519.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CMY9	3.16e-148	100.00	Mitochondrial transcription termination factor family protein OS=Cucumis melo va...	[more]
A0A1S3B056	1.38e-145	100.00	LOW QUALITY PROTEIN: uncharacterized protein LOC103484733 OS=Cucumis melo OX=365...	[more]
A0A6J1E035	8.10e-86	75.53	uncharacterized protein LOC111024679 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1BYX5	5.26e-84	72.77	uncharacterized protein LOC111005954 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A6J1IQK9	1.47e-82	72.77	uncharacterized protein LOC111478530 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of MELO3C007519.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79220.1	7.5e-49	55.08	Mitochondrial transcription termination factor family protein	[more]
AT5G64950.1	3.8e-08	28.00	Mitochondrial transcription termination factor family protein	[more]
AT1G62150.1	1.5e-04	22.01	Mitochondrial transcription termination factor family protein	[more]
AT1G78930.1	5.6e-04	28.71	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 31..62 e-value: 270.0 score: 8.3 coord: 67..98 e-value: 0.26 score: 20.4 coord: 99..130 e-value: 1200.0 score: 3.2
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 3..149 e-value: 3.7E-20 score: 72.1
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 1..188
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 1..163 e-value: 3.0E-20 score: 74.5
None	No IPR available	PANTHER	PTHR13068:SF112	MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN	coord: 1..188

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C007519.jh1.t1	MELO3C007519.jh1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003690	double-stranded DNA binding