MELO3C007473 (gene) Melon (DHL92) v4

Overview
NameMELO3C007473
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionHeat shock protein 40
Locationchr08: 2987458 .. 2987998 (-)
RNA-Seq ExpressionMELO3C007473
SyntenyMELO3C007473
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAATCGTAGGTTGCTGGTTTCAATCGAGAATTCTTCTGTGATTAAACTAAAACTCGACGGTCATGGAGAAGAAAAACAACGACGATAAAAAGGCTCCGATTGTGCTCAGGTCTGGTGAAACGAGAAAAAAATCGACGGCGAATTGGTCTCCGGCGATGGATAATATAGTGAAGCTCTCGCGCAAGATGACATTGGGTAAAGCACTGGATGAACTCGATTCGAAAATCGATGCTATTCTTTATTCTCCACGCAAGACCAAGAGATTGCCAATTTTTGAGGAGATTTGTCCAATTCATTCCTCTTCGTGAGTTTTTTTCTATTTTTTTTTTCTTTTTAAATTCTTTGCGAGTTTGATTTATTTTGTTGATTCAAGATGGAGATGGTGGAAGAGATCATAGTTCCAATTGATCAGGGAATTATGATTAGCCATTTTTTTCTATGGTTTTGACTTTGAATTTGGTCAAGAATTATTGTAATAAATAATCCACCATTAGATTTCTATGAGATTTGTTTATTCAATTTTTTTCATTCAATAATTAAG

mRNA sequence

GAATCGTAGGTTGCTGGTTTCAATCGAGAATTCTTCTGTGATTAAACTAAAACTCGACGGTCATGGAGAAGAAAAACAACGACGATAAAAAGGCTCCGATTGTGCTCAGGTCTGGTGAAACGAGAAAAAAATCGACGGCGAATTGGTCTCCGGCGATGGATAATATAGTGAAGCTCTCGCGCAAGATGACATTGGGTAAAGCACTGGATGAACTCGATTCGAAAATCGATGCTATTCTTTATTCTCCACGCAAGACCAAGAGATTGCCAATTTTTGAGGAGATTTGTCCAATTCATTCCTCTTCGTGAGTTTTTTTCTATTTTTTTTTTCTTTTTAAATTCTTTGCGAGTTTGATTTATTTTGTTGATTCAAGATGGAGATGGTGGAAGAGATCATAGTTCCAATTGATCAGGGAATTATGATTAGCCATTTTTTTCTATGGTTTTGACTTTGAATTTGGTCAAGAATTATTGTAATAAATAATCCACCATTAGATTTCTATGAGATTTGTTTATTCAATTTTTTTCATTCAATAATTAAG

Coding sequence (CDS)

ATGGAGAAGAAAAACAACGACGATAAAAAGGCTCCGATTGTGCTCAGGTCTGGTGAAACGAGAAAAAAATCGACGGCGAATTGGTCTCCGGCGATGGATAATATAGTGAAGCTCTCGCGCAAGATGACATTGGGTAAAGCACTGGATGAACTCGATTCGAAAATCGATGCTATTCTTTATTCTCCACGCAAGACCAAGAGATTGCCAATTTTTGAGGAGATTTGTCCAATTCATTCCTCTTCGTGA

Protein sequence

MEKKNNDDKKAPIVLRSGETRKKSTANWSPAMDNIVKLSRKMTLGKALDELDSKIDAILYSPRKTKRLPIFEEICPIHSSS
Homology
[Close]
BLAST of MELO3C007473 vs. NCBI nr
Match: TYK12969.1 (heat shock protein 40 [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 4.3e-36
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MEKKNNDDKKAPIVLRSGETRKKSTANWSPAMDNIVKLSRKMTLGKALDELDSKIDAILY 60
          MEKKNNDDKKAPIVLRSGETRKKSTANWSPAMDNIVKLSRKMTLGKALDELDSKIDAILY
Sbjct: 1  MEKKNNDDKKAPIVLRSGETRKKSTANWSPAMDNIVKLSRKMTLGKALDELDSKIDAILY 60

Query: 61 SPRKTKRLPIFEEICPIHSSS 82
          SPRKTKRLPIFEEICPIHSSS
Sbjct: 61 SPRKTKRLPIFEEICPIHSSS 81

[Close]
BLAST of MELO3C007473 vs. NCBI nr
Match: KAE8647478.1 (hypothetical protein Csa_003673 [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 3.5e-30
Identity = 72/82 (87.80%), Postives = 78/82 (95.12%), Query Frame = 0 

Query: 1  MEKKNNDDKKAPIVLRSGETRKKSTANWSPAMDNIVKLSRKMTLGKALDELDSKIDAILY 60
          MEKKNNDDKK PIVLRSGET+KKST+NWSPAMDNIVKLS KM+LG+ALDELD+KIDAILY
Sbjct: 1  MEKKNNDDKKTPIVLRSGETKKKSTSNWSPAMDNIVKLSPKMSLGEALDELDAKIDAILY 60

Query: 61 -SPRKTKRLPIFEEICPIHSSS 82
           S R+TKRLPIFEEICPIHSSS
Sbjct: 61 SSSRRTKRLPIFEEICPIHSSS 82

[Close]
BLAST of MELO3C007473 vs. NCBI nr
Match: KAG6604244.1 (hypothetical protein SDJN03_04853, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.9 bits (185), Expect = 1.8e-10
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 0 

Query: 6  NDDKKAPIVLRSGETRKKSTANWSPAMDNIVKL-SRKMTLGKALDELDSKIDAILYSPRK 65
          N  K+ PIV+  GET  K T  WSP MD+IV++ S   +L   +DE+DSKID +LYS + 
Sbjct: 11 NSQKRIPIVVNPGETSTKFTM-WSPLMDHIVQISSSNKSLADNVDEIDSKIDRVLYSSKN 70

Query: 66 TKRLPIFEEICPIHSSS 82
           +RLPIFEE+CP  S+S
Sbjct: 71 FRRLPIFEEMCPSSSAS 86

[Close]
BLAST of MELO3C007473 vs. ExPASy TrEMBL
Match: A0A5D3CRK5 (Heat shock protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005660 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.1e-36
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MEKKNNDDKKAPIVLRSGETRKKSTANWSPAMDNIVKLSRKMTLGKALDELDSKIDAILY 60
          MEKKNNDDKKAPIVLRSGETRKKSTANWSPAMDNIVKLSRKMTLGKALDELDSKIDAILY
Sbjct: 1  MEKKNNDDKKAPIVLRSGETRKKSTANWSPAMDNIVKLSRKMTLGKALDELDSKIDAILY 60

Query: 61 SPRKTKRLPIFEEICPIHSSS 82
          SPRKTKRLPIFEEICPIHSSS
Sbjct: 61 SPRKTKRLPIFEEICPIHSSS 81

[Close]
BLAST of MELO3C007473 vs. ExPASy TrEMBL
Match: A0A0A0KKZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486980 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.7e-30
Identity = 72/82 (87.80%), Postives = 78/82 (95.12%), Query Frame = 0 

Query: 1  MEKKNNDDKKAPIVLRSGETRKKSTANWSPAMDNIVKLSRKMTLGKALDELDSKIDAILY 60
          MEKKNNDDKK PIVLRSGET+KKST+NWSPAMDNIVKLS KM+LG+ALDELD+KIDAILY
Sbjct: 1  MEKKNNDDKKTPIVLRSGETKKKSTSNWSPAMDNIVKLSPKMSLGEALDELDAKIDAILY 60

Query: 61 -SPRKTKRLPIFEEICPIHSSS 82
           S R+TKRLPIFEEICPIHSSS
Sbjct: 61 SSSRRTKRLPIFEEICPIHSSS 82

The following BLAST results are available for this feature:
BLAST of MELO3C007473 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK12969.14.3e-36100.00heat shock protein 40 [Cucumis melo var. makuwa][more]
KAE8647478.13.5e-3087.80hypothetical protein Csa_003673 [Cucumis sativus][more]
KAG6604244.11.8e-1051.95hypothetical protein SDJN03_04853, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of MELO3C007473 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C007473 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CRK52.1e-36100.00Heat shock protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25... [more]
A0A0A0KKZ21.7e-3087.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486980 PE=4 SV=1[more]
BLAST of MELO3C007473 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C007473.1MELO3C007473.1mRNA