MELO3C007348 (gene) Melon (DHL92) v4

Overview


Name	MELO3C007348
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	DNA-directed RNA polymerase III subunit RPC6-like
Location	chr08: 2284875 .. 2286385 (+)
RNA-Seq Expression	MELO3C007348
Synteny	MELO3C007348

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCAAAGTTATAATCCGACCCTCAACCCATCCAACGAACCCAAATTTAGGGTTCGAATTCGTAAAAATTTGAAAATTTTAGTGCCAGATTTTGAGTTTTGTTCCCCTGTTTCTTTCCCAAAACCTAATTCTTTTGTAAGACCTCCGCCTTCTTCTTTTTCCTACCGACCTTCTTCCCTCATCCTCATTTATCCTTCACCGGCGACGGCGACGGCAACGGCAAGGGCTCGTTCCCACCAGCCAGATTTTGACGATTGAAATGTAAAAATTACATTTTTATTAAGTTGGTTTAAATGCGTTTTGATTCTCGAAACACTATGGTTGTAGGAGCTTCAAACAATAATAGGGTATATGTTTAGAAGTAATTTTAGTAATATTATTCTAGTGAGTGATTTGAATCTGATTATATAATTGTTTTAATATTTAGTTTTACACTTTTTCAGAGGTAATTCTGAATGATTTGAAGGTTTTTTTTTGTGATTATTGTTTGTTTGTTTTTGTATATATTGGAAGTTTGATGGTACGCTGGATTGGGAGGAAGAGTTTTGATTACTCAAATTTAGTTTAGTTAATGTCAAAGACCCGAATTCTAAAAATAATGAAAACTAATGTTAGACACTCTCAACATCAATTTGTTTGAAACACTGTATTGTTGGTGCAGCAATGAGTAAATCACAAGGGCCATCATCACTCAAGAGAAAAAGGCCAGATTTGAGTACGAAAAATTCCTCTGTAGGAGCTCTAATTGGGCAAGAAAAAGTTCTCTATGACCTAATTTGCAGCAAGCAAAGCATGGGGATTTGCACTTTTGACATGAAAAGAGAAACAAAGTTTGCCGAAAGTGTTGTAACAAAATCCCTTAAGTCTCTTCAAACCAAAGGCCTGATAAAGATAGTCCAACACTATCAAAACAAAGGCAAGAAGTTCTACCTATCTAACGACTTTGAACCAGCTAAGGAATTAACCGGTGGTAACTGGTATCGTGACGGGGAGCTCGACAAAGACTACATCAATACTCTCAAACAAGTTTGTGCAAGAATGATACAAAGGAAGAAGTTGATGACCATTGAAGGGATTGTGGAGTCTTTCAAACAGAGTGGAGCTTTCAAAGTAGAGTTGACAAGAGAACAAATTGAAGAGATTGTAAATGCTTTGGTGTTGGACAATCAAGTGACGGAAGTGAAGAGCTCTGGATTTGGTGAATTTGAATTTATTCCAATTGGGAAGATTTGTTATAAGTATTGTAGTCAAGGAGGCCTCAAAGGGGAGCCTAAAACAGGGGCAATGGCTTCCATTCCTTGTGGAGTTTGTCCAAGGATCACTCATTGTACCCCAAATGGCATCATTTCTCCTGCTACCTGTGTCTATTATACCAAGTGGTTAGATTTTTAAGTTAACCATTTTGAAAATATACACATAATGTGCATATGAATTTGAACTTGTCTCAAGTTGTGGGACTGATTTCTGTTTTCTTTTTATTTATATATATACACATATTACAGTGTGTTTGGG

mRNA sequence

TTCAAAGTTATAATCCGACCCTCAACCCATCCAACGAACCCAAATTTAGGGTTCGAATTCGTAAAAATTTGAAAATTTTAGTGCCAGATTTTGAGTTTTGTTCCCCTGTTTCTTTCCCAAAACCTAATTCTTTTGTAAGACCTCCGCCTTCTTCTTTTTCCTACCGACCTTCTTCCCTCATCCTCATTTATCCTTCACCGGCGACGGCGACGGCAACGGCAAGGGCTCGTTCCCACCAGCCAGATTTTGACGATTGAAATCAATGAGTAAATCACAAGGGCCATCATCACTCAAGAGAAAAAGGCCAGATTTGAGTACGAAAAATTCCTCTGTAGGAGCTCTAATTGGGCAAGAAAAAGTTCTCTATGACCTAATTTGCAGCAAGCAAAGCATGGGGATTTGCACTTTTGACATGAAAAGAGAAACAAAGTTTGCCGAAAGTGTTGTAACAAAATCCCTTAAGTCTCTTCAAACCAAAGGCCTGATAAAGATAGTCCAACACTATCAAAACAAAGGCAAGAAGTTCTACCTATCTAACGACTTTGAACCAGCTAAGGAATTAACCGGTGGTAACTGGTATCGTGACGGGGAGCTCGACAAAGACTACATCAATACTCTCAAACAAGTTTGTGCAAGAATGATACAAAGGAAGAAGTTGATGACCATTGAAGGGATTGTGGAGTCTTTCAAACAGAGTGGAGCTTTCAAAGTAGAGTTGACAAGAGAACAAATTGAAGAGATTGTAAATGCTTTGGTGTTGGACAATCAAGTGACGGAAGTGAAGAGCTCTGGATTTGGTGAATTTGAATTTATTCCAATTGGGAAGATTTGTTATAAGTATTGTAGTCAAGGAGGCCTCAAAGGGGAGCCTAAAACAGGGGCAATGGCTTCCATTCCTTGTGGAGTTTGTCCAAGGATCACTCATTGTACCCCAAATGGCATCATTTCTCCTGCTACCTGTGTCTATTATACCAAGTGGTTAGATTTTTAAGTTAACCATTTTGAAAATATACACATAATGTGCATATGAATTTGAACTTGTCTCAAGTTGTGGGACTGATTTCTGTTTTCTTTTTATTTATATATATACACATATTACAGTGTGTTTGGG

Coding sequence (CDS)

ATGAGTAAATCACAAGGGCCATCATCACTCAAGAGAAAAAGGCCAGATTTGAGTACGAAAAATTCCTCTGTAGGAGCTCTAATTGGGCAAGAAAAAGTTCTCTATGACCTAATTTGCAGCAAGCAAAGCATGGGGATTTGCACTTTTGACATGAAAAGAGAAACAAAGTTTGCCGAAAGTGTTGTAACAAAATCCCTTAAGTCTCTTCAAACCAAAGGCCTGATAAAGATAGTCCAACACTATCAAAACAAAGGCAAGAAGTTCTACCTATCTAACGACTTTGAACCAGCTAAGGAATTAACCGGTGGTAACTGGTATCGTGACGGGGAGCTCGACAAAGACTACATCAATACTCTCAAACAAGTTTGTGCAAGAATGATACAAAGGAAGAAGTTGATGACCATTGAAGGGATTGTGGAGTCTTTCAAACAGAGTGGAGCTTTCAAAGTAGAGTTGACAAGAGAACAAATTGAAGAGATTGTAAATGCTTTGGTGTTGGACAATCAAGTGACGGAAGTGAAGAGCTCTGGATTTGGTGAATTTGAATTTATTCCAATTGGGAAGATTTGTTATAAGTATTGTAGTCAAGGAGGCCTCAAAGGGGAGCCTAAAACAGGGGCAATGGCTTCCATTCCTTGTGGAGTTTGTCCAAGGATCACTCATTGTACCCCAAATGGCATCATTTCTCCTGCTACCTGTGTCTATTATACCAAGTGGTTAGATTTTTAA

Protein sequence

MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGEFEFIPIGKICYKYCSQGGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKWLDF

Homology

[Close]

BLAST of MELO3C007348 vs. NCBI nr
Match: TYK13079.1 (DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo var. makuwa])

HSP 1 Score: 490.3 bits (1261), Expect = 9.3e-135
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES
Sbjct: 117 MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 176

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK
Sbjct: 177 VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 236

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGE 180
           QVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGE
Sbjct: 237 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGE 296

Query: 181 FEFIPIGKICYKYCSQGGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKWL 240
           FEFIPIGKICYKYCSQGGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKWL
Sbjct: 297 FEFIPIGKICYKYCSQGGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKWL 356

Query: 241 DF 243
           DF
Sbjct: 357 DF 358

[Close]

BLAST of MELO3C007348 vs. NCBI nr
Match: XP_008439941.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo])

HSP 1 Score: 490.3 bits (1261), Expect = 9.3e-135
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES
Sbjct: 1   MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK
Sbjct: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGE 180
           QVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGE
Sbjct: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGE 180

Query: 181 FEFIPIGKICYKYCSQGGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKWL 240
           FEFIPIGKICYKYCSQGGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKWL
Sbjct: 181 FEFIPIGKICYKYCSQGGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKWL 240

Query: 241 DF 243
           DF
Sbjct: 241 DF 242

[Close]

BLAST of MELO3C007348 vs. NCBI nr
Match: KAA0052744.1 (DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo var. makuwa])

HSP 1 Score: 490.3 bits (1261), Expect = 9.3e-135
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES
Sbjct: 117 MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 176

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK
Sbjct: 177 VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 236

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGE 180
           QVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGE
Sbjct: 237 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGE 296

Query: 181 FEFIPIGKICYKYCSQGGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKWL 240
           FEFIPIGKICYKYCSQGGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKWL
Sbjct: 297 FEFIPIGKICYKYCSQGGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKWL 356

Query: 241 DF 243
           DF
Sbjct: 357 DF 358

[Close]

BLAST of MELO3C007348 vs. NCBI nr
Match: TYK19400.1 (DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo var. makuwa])

HSP 1 Score: 471.9 bits (1213), Expect = 3.4e-129
Identity = 235/243 (96.71%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 1   MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           MSKSQGPSSLKRKRPDL TKNSS GALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES
Sbjct: 5   MSKSQGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 64

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK
Sbjct: 65  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 124

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGE 180
           QVCARMIQRKKLMTIEGIVESFKQSGAFKVEL+REQIEEIVNALVLDNQV EVKSSGFGE
Sbjct: 125 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 184

Query: 181 FEFIPIGKICYKYCSQ-GGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKW 240
           FEFIPIGKICYKYC+Q GGLKGEPK GAMASIPCGVCPRIT+CTPNGIISPATCVYYTKW
Sbjct: 185 FEFIPIGKICYKYCTQGGGLKGEPKIGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 244

Query: 241 LDF 243
           LDF
Sbjct: 245 LDF 247

[Close]

BLAST of MELO3C007348 vs. NCBI nr
Match: XP_008448982.1 (PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo] >XP_008448983.1 PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo])

HSP 1 Score: 471.9 bits (1213), Expect = 3.4e-129
Identity = 235/243 (96.71%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 1   MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           MSKSQGPSSLKRKRPDL TKNSS GALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES
Sbjct: 1   MSKSQGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK
Sbjct: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGE 180
           QVCARMIQRKKLMTIEGIVESFKQSGAFKVEL+REQIEEIVNALVLDNQV EVKSSGFGE
Sbjct: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180

Query: 181 FEFIPIGKICYKYCSQ-GGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKW 240
           FEFIPIGKICYKYC+Q GGLKGEPK GAMASIPCGVCPRIT+CTPNGIISPATCVYYTKW
Sbjct: 181 FEFIPIGKICYKYCTQGGGLKGEPKIGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240

Query: 241 LDF 243
           LDF
Sbjct: 241 LDF 243

[Close]

BLAST of MELO3C007348 vs. ExPASy Swiss-Prot
Match: Q2T9S3 (DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus OX=9913 GN=POLR3F PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.9e-23
Identity = 71/231 (30.74%), Postives = 113/231 (48.92%), Query Frame = 0


Query: 30  QEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQHYQNKGKKFY 89
           QEK++Y +I    + GI + D++ ++    + + K LK+L++K LIK V+      KK Y
Sbjct: 91  QEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVY 150

Query: 90  LSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIV-------ESF 149
           +  + +P + +TGG WY D + + +++  L Q C + +Q K     E           SF
Sbjct: 151 MLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQNKAETARESKQNPMIQRNSSF 210

Query: 150 KQS----------GAFKVELTREQIEEIVNALVLDNQV-TEVKSSGFGEFEFIPIGKICY 209
             S          G  KVEL+ E IE I+N L+ D +V   + ++  G    +      Y
Sbjct: 211 ASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLY 270

Query: 210 KYCSQGGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKWLDF 243
           +  S       P TG +   PCG+CP    C   G ISP+ C+Y T+WL+F
Sbjct: 271 RAVS----PIIPPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316

[Close]

BLAST of MELO3C007348 vs. ExPASy Swiss-Prot
Match: Q921X6 (DNA-directed RNA polymerase III subunit RPC6 OS=Mus musculus OX=10090 GN=Polr3f PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.9e-23
Identity = 72/241 (29.88%), Postives = 116/241 (48.13%), Query Frame = 0


Query: 30  QEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQHYQNKGKKFY 89
           QEK++Y +I    + GI + D++ ++    + + K LK+L++K LIK V+      KK Y
Sbjct: 91  QEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVY 150

Query: 90  LSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEG----IVE---SF 149
           +  + +P + +TGG WY D + + +++  L Q C + +Q K     E     +++   SF
Sbjct: 151 MLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPVIQRNSSF 210

Query: 150 KQS----------GAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGEFEFIPIGKICYK 209
             S          G  KVEL+ E IE I+N L+ D +V               +  I  K
Sbjct: 211 ASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKV--------------EMTIIAAK 270

Query: 210 YCSQGGLKGE-----------PKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKWLD 243
             + G + G            P TG + + PCG+CP    C   G ISP+ C+Y T+WL+
Sbjct: 271 EGTVGSVDGHMKLYRAVNPILPPTGVVRA-PCGLCPVFEDCHEGGEISPSNCIYMTEWLE 316

[Close]

BLAST of MELO3C007348 vs. ExPASy Swiss-Prot
Match: Q9H1D9 (DNA-directed RNA polymerase III subunit RPC6 OS=Homo sapiens OX=9606 GN=POLR3F PE=1 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.2e-22
Identity = 72/241 (29.88%), Postives = 112/241 (46.47%), Query Frame = 0


Query: 30  QEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQHYQNKGKKFY 89
           QEK++Y +I    + GI + D++ ++    + + K LK+L++K LIK V+      KK Y
Sbjct: 91  QEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVY 150

Query: 90  LSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIV-------ESF 149
           +  + +P + +TGG WY D + + +++  L Q C + +Q K     E           SF
Sbjct: 151 MLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRNSSF 210

Query: 150 KQS----------GAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGEFEFIPIGKICYK 209
             S          G  KVEL+ E IE I+N L+ D +V               +  I  K
Sbjct: 211 ASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKV--------------EMTIIAAK 270

Query: 210 YCSQGGLKGE-----------PKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKWLD 243
             + G + G            P TG +   PCG+CP    C   G ISP+ C+Y T+WL+
Sbjct: 271 EGTVGSVDGHMKLYRAVNPIIPPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLE 316

[Close]

BLAST of MELO3C007348 vs. ExPASy Swiss-Prot
Match: Q86JM3 (DNA-directed RNA polymerase III subunit rpc6 OS=Dictyostelium discoideum OX=44689 GN=polr3f PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-21
Identity = 67/243 (27.57%), Postives = 118/243 (48.56%), Query Frame = 0


Query: 1   MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           +  S   +S K   P+   K   +G    ++ ++Y LI +  + G  T ++K  + + + 
Sbjct: 52  IQNSDETTSYKEVNPEDQAKFRGLGV---EDFLIYQLIEASSNTGAWTRELKNSSGYQQV 111

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
            +TK LK+L+++ LIK V+  Q+  KK Y+  + EP++E+TGG  Y D   D  YI  +K
Sbjct: 112 QITKILKTLESRKLIKSVKSIQSGRKKVYMLYNMEPSREITGGQLYSDQSYDHQYIQIMK 171

Query: 121 QVCARMIQRKKLMTIEGIVESFKQ--SGAFKVELTREQIEEIVNALVLDNQVTEVKSSGF 180
                 +  K  + +  I+   ++    A    L  E I+ +VN ++ D  + E++ +  
Sbjct: 172 MHIKTFVDNKGAVDLADIITYLRKVAEEATSQSLGPEDIQALVNTVIYDGDIEEMRDTRM 231

Query: 181 GEFEFIPIGKICYKYCSQGGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTK 240
           G       G I YK       K         ++PCG CP    C+ NG++SP  CVY+ +
Sbjct: 232 GAMLGRRSG-ILYK-----PTKTPIPVNNFCNMPCGNCPVFDICSDNGLVSPKRCVYFKQ 285

Query: 241 WLD 242
           +L+
Sbjct: 292 YLE 285

[Close]

BLAST of MELO3C007348 vs. ExPASy Swiss-Prot
Match: Q9VD25 (Probable DNA-directed RNA polymerase III subunit RPC6 OS=Drosophila melanogaster OX=7227 GN=CG5380 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.1e-21
Identity = 63/229 (27.51%), Postives = 104/229 (45.41%), Query Frame = 0


Query: 30  QEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQHYQNKGKKFY 89
           +EKV+Y ++    + GI   D++ ++      + K LK+L+TK LIK V+      KK Y
Sbjct: 79  EEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQLNKILKNLETKKLIKAVKSVNASKKKVY 138

Query: 90  LSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKK-----------------L 149
           +  + EP   +TGG WY+D + + ++++ L Q C R +Q K+                  
Sbjct: 139 MLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKKREGPLAFKQMSC 198

Query: 150 MTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGEFEFIPIGKICYK 209
            T+  + +     G  KV L    +E I+  +V D     V+    G F +  +      
Sbjct: 199 CTVNEVQKFISDLGISKVNLAEADLETILKTVVYDGNAERVRQQD-GSFVYRAVNAPL-- 258

Query: 210 YCSQGGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKWLD 242
                     P TG +  +PCG+CP I +C+  G ++  TC Y   WLD
Sbjct: 259 ----------PPTG-LVQMPCGICPVIKNCSNCGDVTAITCEYMRDWLD 293

[Close]

BLAST of MELO3C007348 vs. ExPASy TrEMBL
Match: A0A5D3CS47 (DNA-directed RNA polymerase III subunit RPC6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006860 PE=3 SV=1)

HSP 1 Score: 490.3 bits (1261), Expect = 4.5e-135
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES
Sbjct: 117 MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 176

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK
Sbjct: 177 VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 236

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGE 180
           QVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGE
Sbjct: 237 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGE 296

Query: 181 FEFIPIGKICYKYCSQGGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKWL 240
           FEFIPIGKICYKYCSQGGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKWL
Sbjct: 297 FEFIPIGKICYKYCSQGGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKWL 356

Query: 241 DF 243
           DF
Sbjct: 357 DF 358

[Close]

BLAST of MELO3C007348 vs. ExPASy TrEMBL
Match: A0A5A7UBI4 (DNA-directed RNA polymerase III subunit RPC6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G003590 PE=3 SV=1)

HSP 1 Score: 490.3 bits (1261), Expect = 4.5e-135
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES
Sbjct: 117 MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 176

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK
Sbjct: 177 VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 236

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGE 180
           QVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGE
Sbjct: 237 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGE 296

Query: 181 FEFIPIGKICYKYCSQGGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKWL 240
           FEFIPIGKICYKYCSQGGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKWL
Sbjct: 297 FEFIPIGKICYKYCSQGGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKWL 356

Query: 241 DF 243
           DF
Sbjct: 357 DF 358

[Close]

BLAST of MELO3C007348 vs. ExPASy TrEMBL
Match: A0A1S3AZZ6 (DNA-directed RNA polymerase III subunit RPC6-like OS=Cucumis melo OX=3656 GN=LOC103484577 PE=3 SV=1)

HSP 1 Score: 490.3 bits (1261), Expect = 4.5e-135
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES
Sbjct: 1   MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK
Sbjct: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGE 180
           QVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGE
Sbjct: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGE 180

Query: 181 FEFIPIGKICYKYCSQGGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKWL 240
           FEFIPIGKICYKYCSQGGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKWL
Sbjct: 181 FEFIPIGKICYKYCSQGGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKWL 240

Query: 241 DF 243
           DF
Sbjct: 241 DF 242

[Close]

BLAST of MELO3C007348 vs. ExPASy TrEMBL
Match: A0A1S3BL06 (DNA-directed RNA polymerase III subunit rpc6-like OS=Cucumis melo OX=3656 GN=LOC103490992 PE=3 SV=1)

HSP 1 Score: 471.9 bits (1213), Expect = 1.7e-129
Identity = 235/243 (96.71%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 1   MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           MSKSQGPSSLKRKRPDL TKNSS GALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES
Sbjct: 1   MSKSQGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK
Sbjct: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGE 180
           QVCARMIQRKKLMTIEGIVESFKQSGAFKVEL+REQIEEIVNALVLDNQV EVKSSGFGE
Sbjct: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180

Query: 181 FEFIPIGKICYKYCSQ-GGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKW 240
           FEFIPIGKICYKYC+Q GGLKGEPK GAMASIPCGVCPRIT+CTPNGIISPATCVYYTKW
Sbjct: 181 FEFIPIGKICYKYCTQGGGLKGEPKIGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240

Query: 241 LDF 243
           LDF
Sbjct: 241 LDF 243

[Close]

BLAST of MELO3C007348 vs. ExPASy TrEMBL
Match: A0A5D3D7H7 (DNA-directed RNA polymerase III subunit rpc6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00330 PE=3 SV=1)

HSP 1 Score: 471.9 bits (1213), Expect = 1.7e-129
Identity = 235/243 (96.71%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 1   MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           MSKSQGPSSLKRKRPDL TKNSS GALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES
Sbjct: 5   MSKSQGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 64

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK
Sbjct: 65  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 124

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGE 180
           QVCARMIQRKKLMTIEGIVESFKQSGAFKVEL+REQIEEIVNALVLDNQV EVKSSGFGE
Sbjct: 125 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 184

Query: 181 FEFIPIGKICYKYCSQ-GGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKW 240
           FEFIPIGKICYKYC+Q GGLKGEPK GAMASIPCGVCPRIT+CTPNGIISPATCVYYTKW
Sbjct: 185 FEFIPIGKICYKYCTQGGGLKGEPKIGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 244

Query: 241 LDF 243
           LDF
Sbjct: 245 LDF 247

[Close]

BLAST of MELO3C007348 vs. TAIR 10
Match: AT5G23710.1 (DNA binding;DNA-directed RNA polymerases )

HSP 1 Score: 198.0 bits (502), Expect = 8.9e-51
Identity = 106/234 (45.30%), Postives = 145/234 (61.97%), Query Frame = 0


Query: 11  KRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQ 70
           KRKRPD   K+S        EK L DLI   Q  G   F++KRE     ++VT+ + SL+
Sbjct: 3   KRKRPD--PKSSGGDLNEPHEKKLLDLIRINQGRGATMFELKREKTIPATIVTRLIASLR 62

Query: 71  TKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQ-- 130
            K LIK V +  NKG K YL+ +FEP  ELTGG WY DG LD   I  LK  C  +++  
Sbjct: 63  KKNLIKEVANMNNKGVKHYLAMEFEPCSELTGGEWYTDGALDLSKIEDLKAKCVMILERH 122

Query: 131 RKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGEFEFIPIGK 190
           R++++T+E +   F +    + +L+ +Q +EI+  L+LDN + EVKS+G  EF    IG+
Sbjct: 123 RQRVVTLEVLCGYFVK----EEKLSVDQTKEILKNLILDNLIMEVKSNGMNEFASTRIGE 182

Query: 191 ICYKYCSQGGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKWLDF 243
           +CY+   +    GEP+ GA ASIPCGVCP I  C+P+G+ISP TCVY+ KWLDF
Sbjct: 183 VCYRLTGKKFGNGEPRAGAFASIPCGVCPHIAICSPDGVISPTTCVYFQKWLDF 230

The following BLAST results are available for this feature:

BLAST of MELO3C007348 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK13079.1	9.3e-135	100.00	DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo var. makuwa]	[more]
XP_008439941.1	9.3e-135	100.00	PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo]	[more]
KAA0052744.1	9.3e-135	100.00	DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo var. makuwa]	[more]
TYK19400.1	3.4e-129	96.71	DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo var. makuwa]	[more]
XP_008448982.1	3.4e-129	96.71	PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo] >XP_...	[more]

BLAST of MELO3C007348 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2T9S3	9.9e-23	30.74	DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus OX=9913 GN=POLR3F PE=...	[more]
Q921X6	9.9e-23	29.88	DNA-directed RNA polymerase III subunit RPC6 OS=Mus musculus OX=10090 GN=Polr3f ...	[more]
Q9H1D9	2.2e-22	29.88	DNA-directed RNA polymerase III subunit RPC6 OS=Homo sapiens OX=9606 GN=POLR3F P...	[more]
Q86JM3	1.1e-21	27.57	DNA-directed RNA polymerase III subunit rpc6 OS=Dictyostelium discoideum OX=4468...	[more]
Q9VD25	7.1e-21	27.51	Probable DNA-directed RNA polymerase III subunit RPC6 OS=Drosophila melanogaster...	[more]

BLAST of MELO3C007348 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CS47	4.5e-135	100.00	DNA-directed RNA polymerase III subunit RPC6-like OS=Cucumis melo var. makuwa OX...	[more]
A0A5A7UBI4	4.5e-135	100.00	DNA-directed RNA polymerase III subunit RPC6-like OS=Cucumis melo var. makuwa OX...	[more]
A0A1S3AZZ6	4.5e-135	100.00	DNA-directed RNA polymerase III subunit RPC6-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A1S3BL06	1.7e-129	96.71	DNA-directed RNA polymerase III subunit rpc6-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A5D3D7H7	1.7e-129	96.71	DNA-directed RNA polymerase III subunit rpc6-like OS=Cucumis melo var. makuwa OX...	[more]

BLAST of MELO3C007348 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23710.1	8.9e-51	45.30	DNA binding;DNA-directed RNA polymerases	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 29..93 e-value: 5.4E-15 score: 57.1
IPR007832	RNA polymerase Rpc34	PFAM	PF05158	RNA_pol_Rpc34	coord: 29..133 e-value: 6.5E-26 score: 91.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
IPR016049	RNA polymerase Rpc34-like	PANTHER	PTHR12780	RNA POLYMERASE III DNA DIRECTED , 39KD SUBUNIT-RELATED	coord: 20..242
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 29..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C007348.1	MELO3C007348.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006383	transcription by RNA polymerase III
cellular_component	GO:0005666	RNA polymerase III complex