MELO3C007316 (gene) Melon (DHL92) v4

Overview
NameMELO3C007316
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Locationchr08: 2114121 .. 2114932 (-)
RNA-Seq ExpressionMELO3C007316
SyntenyMELO3C007316
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCACCTCATTTAGCCTTTCGGAGCATCCAACACTTCAACACCAACAACAACAAAAAAAAAAAAAAAAAAAAAATCTTTTACTTCTTCTTAAACTGATATCTCTAGAAGATGGGTGAAGAAGCTAAGATGATGAACAACATCAACGGTCAGAGATTGGGAAGGAGAATTTCTGGGCGTTTGATCCCAAAGAGAGGGCAAGTGAAGATGGGAATCATGGTGGGGTTGGCTCAAACTGTCACTTCTATCTTCTCTAACAGTCACAGTACTCAACAACAACATTGAACATTTAGATAGACACAAACGTACATAGCTTCTATGTAATTTTGAGGTTGAAGAGATTAAGGTTGTAAATTTGTAGTGATATCAATGTCAATTTTATAACTTTTCAACTATTCCTTGTAATGCTTCAACTTTTCTCTATCCTTCAACTTTTCTCTATGAATTGGGGGAGAAACACCAAAAATGAAAGAATCAAATCTGTCTAATTCTAAGAAATGGGTAACAGAAAAAAGAGGAAAAACTAAAAGAATTTTGTGGTTATTGGTGAAGTTTAACCGATCCGGGAGTTGTCTCTGCCGAATACAAGAGTGGTAGCCCAGTTGACAGCCACATAAAACCTGTTTCTCCAGCTGATTACACGAGTCAGATATGCAGATCGCCATATGAGCCAACTCAAGAACCCTGCTAGTGATATGCCTTTTGCATCCTGTTAATACCCACAATCCAAAAACATTTCACGACCCCAAAGTTATTGATATTTGAATAAATCAAGATTGATTGTTTTTTTCTTTTTACCTTGGACTGGCGTAGAT

mRNA sequence

CCACCTCATTTAGCCTTTCGGAGCATCCAACACTTCAACACCAACAACAACAAAAAAAAAAAAAAAAAAAAAATCTTTTACTTCTTCTTAAACTGATATCTCTAGAAGATGGGTGAAGAAGCTAAGATGATGAACAACATCAACGGTCAGAGATTGGGAAGGAGAATTTCTGGGCGTTTGATCCCAAAGAGAGGGCAAGTGAAGATGGGAATCATGGTGGGGTTGGCTCAAACTGTCACTTCTATCTTCTCTAACAGTCACAGTACTCAACAACAACATTGAACATTTAGATAGACACAAACGTACATAGCTTCTATGTAATTTTGAGGTTGAAGAGATTAAGGTTGTAAATTTGTAGTGATATCAATGTCAATTTTATAACTTTTCAACTATTCCTTGTAATGCTTCAACTTTTCTCTATCCTTCAACTTTTCTCTATGAATTGGGGGAGAAACACCAAAAATGAAAGAATCAAATCTGTCTAATTCTAAGAAATGGGTAACAGAAAAAAGAGGAAAAACTAAAAGAATTTTGTGGTTATTGGTGAAGTTTAACCGATCCGGGAGTTGTCTCTGCCGAATACAAGAGTGGTAGCCCAGTTGACAGCCACATAAAACCTGTTTCTCCAGCTGATTACACGAGTCAGATATGCAGATCGCCATATGAGCCAACTCAAGAACCCTGCTAGTGATATGCCTTTTGCATCCTGTTAATACCCACAATCCAAAAACATTTCACGACCCCAAAGTTATTGATATTTGAATAAATCAAGATTGATTGTTTTTTTCTTTTTACCTTGGACTGGCGTAGAT

Coding sequence (CDS)

ATGGGTGAAGAAGCTAAGATGATGAACAACATCAACGGTCAGAGATTGGGAAGGAGAATTTCTGGGCGTTTGATCCCAAAGAGAGGGCAAGTGAAGATGGGAATCATGGTGGGGTTGGCTCAAACTGTCACTTCTATCTTCTCTAACAGTCACAGTACTCAACAACAACATTGA

Protein sequence

MGEEAKMMNNINGQRLGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQQQH
Homology
BLAST of MELO3C007316 vs. NCBI nr
Match: KAA0052717.1 (hypothetical protein E6C27_scaffold120G003300 [Cucumis melo var. makuwa] >TYK13107.1 hypothetical protein E5676_scaffold255G007170 [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 9.5e-22
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 1  MGEEAKMMNNINGQRLGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQQQH 58
          MGEEAKMMNNINGQRLGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQQQH
Sbjct: 1  MGEEAKMMNNINGQRLGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQQQH 57

BLAST of MELO3C007316 vs. NCBI nr
Match: KAG7026593.1 (Anaphase-promoting complex subunit 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 70.5 bits (171), Expect = 5.4e-09
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 0

Query: 8  MNNINGQRLGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQQQH 58
          MNNING+R+ RRI GR IPKRGQVKMGIMVG+  TVTSIFS+ H     H
Sbjct: 1  MNNINGERICRRIGGRPIPKRGQVKMGIMVGIVHTVTSIFSHGHGHGHGH 50

BLAST of MELO3C007316 vs. NCBI nr
Match: EEF40912.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-05
Identity = 28/48 (58.33%), Postives = 41/48 (85.42%), Query Frame = 0

Query: 8  MNNINGQRLGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQQ 56
          M  ++ +++ RR+SGR IPKRGQVK+GI+VGLA +V SIFS+SHS+++
Sbjct: 6  MGMMSDRKVSRRLSGRPIPKRGQVKVGIVVGLAHSVASIFSHSHSSRR 53

BLAST of MELO3C007316 vs. NCBI nr
Match: KAF9672289.1 (hypothetical protein SADUNF_Sadunf11G0025900 [Salix dunnii])

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-04
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 0

Query: 11 INGQRLGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFS 49
          ING R  +R+ GRLIPKRGQVK+GI++GLA TV SIFS
Sbjct: 10 INGGRHSQRVYGRLIPKRGQVKLGIVLGLAHTVASIFS 47

BLAST of MELO3C007316 vs. NCBI nr
Match: GAY34397.1 (hypothetical protein CUMW_011210 [Citrus unshiu])

HSP 1 Score: 55.1 bits (131), Expect = 2.3e-04
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 0

Query: 11 INGQRLGRRI-----SGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQ 55
          ING  + RR+     SGR IPKRGQVKM I+VGLA +V SIFS+SHS +
Sbjct: 9  INGGNISRRLTAGGGSGRPIPKRGQVKMAILVGLAHSVASIFSHSHSNR 57

BLAST of MELO3C007316 vs. ExPASy TrEMBL
Match: A0A5A7UDZ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007170 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.6e-22
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 1  MGEEAKMMNNINGQRLGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQQQH 58
          MGEEAKMMNNINGQRLGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQQQH
Sbjct: 1  MGEEAKMMNNINGQRLGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQQQH 57

BLAST of MELO3C007316 vs. ExPASy TrEMBL
Match: B9S603 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1062910 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.9e-06
Identity = 28/48 (58.33%), Postives = 41/48 (85.42%), Query Frame = 0

Query: 8  MNNINGQRLGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQQ 56
          M  ++ +++ RR+SGR IPKRGQVK+GI+VGLA +V SIFS+SHS+++
Sbjct: 6  MGMMSDRKVSRRLSGRPIPKRGQVKVGIVVGLAHSVASIFSHSHSSRR 53

BLAST of MELO3C007316 vs. ExPASy TrEMBL
Match: A0A2H5N387 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_011210 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-04
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 0

Query: 11 INGQRLGRRI-----SGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQ 55
          ING  + RR+     SGR IPKRGQVKM I+VGLA +V SIFS+SHS +
Sbjct: 9  INGGNISRRLTAGGGSGRPIPKRGQVKMAILVGLAHSVASIFSHSHSNR 57

BLAST of MELO3C007316 vs. ExPASy TrEMBL
Match: K7L2M4 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_07G191400 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-04
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 0

Query: 5  AKMMNNINGQR-LGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQ 55
          A+    ING R   RR SGR IPKRGQVK+GI+VGLA +V SIFS S +T+
Sbjct: 4  ARASGMINGGRSFPRRFSGRPIPKRGQVKVGIVVGLANSVASIFSRSRATR 54

BLAST of MELO3C007316 vs. ExPASy TrEMBL
Match: A0A445JYT4 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Glycine soja OX=3848 GN=D0Y65_018344 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-04
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 0

Query: 5   AKMMNNINGQR-LGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQ 55
           A+    ING R   RR SGR IPKRGQVK+GI+VGLA +V SIFS S +T+
Sbjct: 398 ARASGMINGGRSFPRRFSGRPIPKRGQVKVGIVVGLANSVASIFSRSRATR 448

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0052717.19.5e-22100.00hypothetical protein E6C27_scaffold120G003300 [Cucumis melo var. makuwa] >TYK131... [more]
KAG7026593.15.4e-0970.00Anaphase-promoting complex subunit 4, partial [Cucurbita argyrosperma subsp. arg... [more]
EEF40912.11.6e-0558.33conserved hypothetical protein [Ricinus communis][more]
KAF9672289.11.8e-0471.05hypothetical protein SADUNF_Sadunf11G0025900 [Salix dunnii][more]
GAY34397.12.3e-0461.22hypothetical protein CUMW_011210 [Citrus unshiu][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UDZ44.6e-22100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
B9S6037.9e-0658.33Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1062910 PE=4 SV=1[more]
A0A2H5N3871.1e-0461.22Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_011210 PE=4 SV=1[more]
K7L2M41.5e-0460.78Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_07G191400 PE=4 SV=1[more]
A0A445JYT41.5e-0460.78Retrovirus-related Pol polyprotein from transposon RE1 OS=Glycine soja OX=3848 G... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36615PROTEIN, PUTATIVE-RELATEDcoord: 8..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C007316.1MELO3C007316.1mRNA