MELO3C006829 (gene) Melon (DHL92) v4

Overview


Name	MELO3C006829
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	40S ribosomal protein S20
Location	chr06: 6427335 .. 6429279 (-)
RNA-Seq Expression	MELO3C006829
Synteny	MELO3C006829

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGAACCCGAGCCCACTTTCAGGAAAGGAAAAAAAAAACCCTAATAGCTCCCGAATCATATAAATTGTAATATCGTCACTCTCGTTCTCCTTCTTTCAGAGGCAGCTGGATACGCAATTGTTGAGATCTCCTTCGCACCCGCCGTCCCAGGTTTCTCTATTTTTCTTATCTCCATTGCTTATTGTTTCTTGTATTTTGGAATTGTTTCCTGTGGTTGAGTTCTTTTTGTCAATATTGAAACCACTGTTCGGTTGGTTCAACAGATTCATTTTGGAAACAGGAAGTATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGACACACAAGAGCAAATCCATAAGATCAGGATTACACTCTCCTCCAAAAATGTCAAGAACCTCGAGAAAGGTATTCACTTTTACATGCTGGATTATTGTTGTTTTTTTTTTTCTTCTTCTTTTGTAATTTAGTGAATATGGGACTCAAATGAGACTGCGTTTTCGTTTGTTTAGTTTGTTAACTTTCATGTCAAGTGAGTAGAGGATGATTGGTTGGTAATTTTCTTGCAATGCTCTGATTATGAATTGAATACGATATAATATTGTAAACACGTGAACAAATTATTGAGAGATAGTATTGTTGGATAAAATGGATGAATGATCCTTATTTTATGCCTAATGACCAACGCGAGTTTAGGGGTTGTTAAATTACTTCTTAAGATTGTAGTTTGTTTTTCTGGATGTTGGTGCATTGTTAATCCTCACTCTATTGATTTCTACTGCATAGTTGGCTTATCATGTAATTGGGTTTAGGGTTTTTCAAAGTTGTCCAATTTACGGCCCTTCTGTCAATTAGTTTGTTTGATGTCATTTTTAATCAATAGTCTGCGCCGATTTGGTTCGTGGTGCGAAGGACAAGAGGTTGAGGGTGAAGGGACCAGTGAGAATGCCCACTAAAGTTCTCCACATCACAACCAGAAAATCTCCATGTGGTGAAGGTATTTTGTTTTCCACTTATCTATGATCTTCTGAGTTTAAGTTCATCTTTTCGTGGATTTGAAACTAATATATGTAATATCCCTTCATCGCGGTCCATTGCCATTTGGGAACTCATTTCTTGTGACGTCATTTCAATATTTGCTATCAAATTTGGAAAGAGGGGTGGATTCTTTTGGTTTTTATAGATATGAGTCCGATGTTGAAAAATCATCTAAGGCCAATTCTTAGTGAAATCATTTCTTTGTTCGGTTTTTGATTGTAGGTACCAACACATGGGACAGATTTGAACTTCGTGTTCACAAGCGAGTTATTGACCTTTTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATTGAACCTGGGGTGGAGGTTGAGGTCACCATCGCCGATCAATGAGTGCACTCTTTTTCATGTTTCGACTATTTTTAGTTTCATTAGACAGCTGTTACTTTTTTGGGTTTGGAACATACCTGTCAGGTCATTGGGGTTTAAATGCAATAGTTGTTCCCATTATATGTTGAAATTAAAGACATTGATAGAGTTTTCAATTCCTGGCAAATTTTTCTTGCTTTAGAACTAATGTTAATTTTTCTATCTATGCAGATTTTGTATCTATAGCTGTGTGAATTCTTTCTTAATTCAGATTTAAATGTGCAATGCTTCAATAATCCATATCACGGTTCTTTATATTCGAATCACAGCTTCTTGGTTTTTTCTTCGACAGGTGAATAAATAAGGACATATAGGAAGAAAAGTTTCAAAGGTAAATAAAATTATAAATGGCGTCTAGGTGAGTCTGTCGTTATGATGACATACATATAAACTAGCCAAATGAGCTCAACTCATTTCTCTTTAGAAGTTGGAGAACCAATTCTTTTAACTCTATTTAAGTAGCAAGCTCCTTTCCCAGGATCAAAAGAAATTTAAGAATTGATGTAAACAATT

mRNA sequence

ATGATCGAACCCGAGCCCACTTTCAGGAAAGAGGCAGCTGGATACGCAATTGTTGAGATCTCCTTCGCACCCGCCGTCCCAGGAAGTATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGACACACAAGAGCAAATCCATAAGATCAGGATTACACTCTCCTCCAAAAATGTCAAGAACCTCGAGAAAGTCTGCGCCGATTTGGTTCGTGGTGCGAAGGACAAGAGGTTGAGGGTGAAGGGACCAGTGAGAATGCCCACTAAAGTTCTCCACATCACAACCAGAAAATCTCCATGTGGTGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTTCACAAGCGAGTTATTGACCTTTTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATTGAACCTGGGGTGGAGGTTGAGGTCACCATCGCCGATCAATGAGTGCACTCTTTTTCATGTTTCGACTATTTTTAGTTTCATTAGACAGCTGTTACTTTTTTGGGTTTGGAACATACCTGTCAGGTCATTGGGGTTTAAATGCAATAGTTGTTCCCATTATATGTTGAAATTAAAGACATTGATAGAGTTTTCAATTCCTGGCAAATTTTTCTTGCTTTAGAACTAATGTTAATTTTTCTATCTATGCAGATTTTGTATCTATAGCTGTGTGAATTCTTTCTTAATTCAGATTTAAATGTGCAATGCTTCAATAATCCATATCACGGTTCTTTATATTCGAATCACAGCTTCTTGGTTTTTTCTTCGACAGGTGAATAAATAAGGACATATAGGAAGAAAAGTTTCAAAGGTAAATAAAATTATAAATGGCGTCTAGGTGAGTCTGTCGTTATGATGACATACATATAAACTAGCCAAATGAGCTCAACTCATTTCTCTTTAGAAGTTGGAGAACCAATTCTTTTAACTCTATTTAAGTAGCAAGCTCCTTTCCCAGGATCAAAAGAAATTTAAGAATTGATGTAAACAATT

Coding sequence (CDS)

ATGATCGAACCCGAGCCCACTTTCAGGAAAGAGGCAGCTGGATACGCAATTGTTGAGATCTCCTTCGCACCCGCCGTCCCAGGAAGTATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGACACACAAGAGCAAATCCATAAGATCAGGATTACACTCTCCTCCAAAAATGTCAAGAACCTCGAGAAAGTCTGCGCCGATTTGGTTCGTGGTGCGAAGGACAAGAGGTTGAGGGTGAAGGGACCAGTGAGAATGCCCACTAAAGTTCTCCACATCACAACCAGAAAATCTCCATGTGGTGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTTCACAAGCGAGTTATTGACCTTTTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATTGAACCTGGGGTGGAGGTTGAGGTCACCATCGCCGATCAATGA

Protein sequence

MIEPEPTFRKEAAGYAIVEISFAPAVPGSMAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIADQ

Homology

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BLAST of MELO3C006829 vs. NCBI nr
Match: XP_022922646.1 (40S ribosomal protein S20-2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 245.4 bits (625), Expect = 3.2e-61
Identity = 124/128 (96.88%), Postives = 125/128 (97.66%), Query Frame = 0


Query: 24  PAVPGSMAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVK 83
           P + GSMAYAAMKPTK GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVK
Sbjct: 28  PRITGSMAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVK 87

Query: 84  GPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE 143
           GPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE
Sbjct: 88  GPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE 147

Query: 144 VEVTIADQ 152
           VEVTIADQ
Sbjct: 148 VEVTIADQ 155

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BLAST of MELO3C006829 vs. NCBI nr
Match: KAG6576788.1 (40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 245.4 bits (625), Expect = 3.2e-61
Identity = 124/128 (96.88%), Postives = 125/128 (97.66%), Query Frame = 0


Query: 24  PAVPGSMAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVK 83
           P + GSMAYAAMKPTK GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVK
Sbjct: 259 PRITGSMAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVK 318

Query: 84  GPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE 143
           GPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE
Sbjct: 319 GPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE 378

Query: 144 VEVTIADQ 152
           VEVTIADQ
Sbjct: 379 VEVTIADQ 386

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BLAST of MELO3C006829 vs. NCBI nr
Match: XP_022922647.1 (40S ribosomal protein S20-2-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 245.4 bits (625), Expect = 3.2e-61
Identity = 124/128 (96.88%), Postives = 125/128 (97.66%), Query Frame = 0


Query: 24  PAVPGSMAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVK 83
           P + GSMAYAAMKPTK GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVK
Sbjct: 28  PRITGSMAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVK 87

Query: 84  GPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE 143
           GPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE
Sbjct: 88  GPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE 147

Query: 144 VEVTIADQ 152
           VEVTIADQ
Sbjct: 148 VEVTIADQ 155

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BLAST of MELO3C006829 vs. NCBI nr
Match: KAG6600158.1 (Glutathione S-transferase U17, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 244.2 bits (622), Expect = 7.2e-61
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 0


Query: 28  GSMAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVR 87
           G MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVR
Sbjct: 227 GRMAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVR 286

Query: 88  MPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVT 147
           MPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVT
Sbjct: 287 MPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVT 346

Query: 148 IADQ 152
           IADQ
Sbjct: 347 IADQ 350

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BLAST of MELO3C006829 vs. NCBI nr
Match: XP_008439109.1 (PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo] >XP_022941728.1 40S ribosomal protein S20-2-like [Cucurbita moschata] >XP_022973095.1 40S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023516475.1 40S ribosomal protein S20-2-like [Cucurbita pepo subsp. pepo] >XP_038878364.1 40S ribosomal protein S20-2-like [Benincasa hispida] >XP_038878373.1 40S ribosomal protein S20-2-like [Benincasa hispida] >XP_038878380.1 40S ribosomal protein S20-2-like [Benincasa hispida] >XP_038878389.1 40S ribosomal protein S20-2-like [Benincasa hispida] >KAA0067687.1 40S ribosomal protein S20-2-like [Cucumis melo var. makuwa] >KAG7030825.1 40S ribosomal protein S20-2 [Cucurbita argyrosperma subsp. argyrosperma] >TYK23691.1 40S ribosomal protein S20-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 242.3 bits (617), Expect = 2.7e-60
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 30  MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 89
           MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 90  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 149
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 150 DQ 152
           DQ
Sbjct: 121 DQ 122

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BLAST of MELO3C006829 vs. ExPASy Swiss-Prot
Match: Q9STY6 (40S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.2e-55
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 30  MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 89
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 90  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 149
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 150 D 151
           D
Sbjct: 121 D 121

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BLAST of MELO3C006829 vs. ExPASy Swiss-Prot
Match: P49200 (40S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2)

HSP 1 Score: 214.2 bits (544), Expect = 1.0e-54
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 31  AYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 90
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 91  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 150
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]

BLAST of MELO3C006829 vs. ExPASy Swiss-Prot
Match: P35686 (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2 SV=2)

HSP 1 Score: 199.9 bits (507), Expect = 2.0e-50
Identity = 103/123 (83.74%), Postives = 111/123 (90.24%), Query Frame = 0


Query: 30  MAYA-AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRM 89
           +AYA  MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRM
Sbjct: 6   VAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRM 65

Query: 90  PTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTI 149
           PTKVLHITTRKSPCGEGTNTWDRFE+RVHKRVIDL SSADVVKQITSITIEPGVEVEVTI
Sbjct: 66  PTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTI 125

Query: 150 ADQ 152
           +DQ
Sbjct: 126 SDQ 128

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BLAST of MELO3C006829 vs. ExPASy Swiss-Prot
Match: P23403 (40S ribosomal protein S20 OS=Xenopus laevis OX=8355 GN=rps20 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.8e-42
Identity = 80/107 (74.77%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 44  DTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCG 103
           D +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCG
Sbjct: 12  DQEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCG 71

Query: 104 EGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 151
           EG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 72  EGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]

BLAST of MELO3C006829 vs. ExPASy Swiss-Prot
Match: Q3ZBH8 (40S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.3e-41
Identity = 82/117 (70.09%), Postives = 101/117 (86.32%), Query Frame = 0


Query: 34  AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL 93
           A K T     + +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L
Sbjct: 2   AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query: 94  HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 151
            ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 62  RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]

BLAST of MELO3C006829 vs. ExPASy TrEMBL
Match: A0A6J1E3W2 (40S ribosomal protein S20-2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430590 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.6e-61
Identity = 124/128 (96.88%), Postives = 125/128 (97.66%), Query Frame = 0


Query: 24  PAVPGSMAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVK 83
           P + GSMAYAAMKPTK GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVK
Sbjct: 28  PRITGSMAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVK 87

Query: 84  GPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE 143
           GPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE
Sbjct: 88  GPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE 147

Query: 144 VEVTIADQ 152
           VEVTIADQ
Sbjct: 148 VEVTIADQ 155

[Close]

BLAST of MELO3C006829 vs. ExPASy TrEMBL
Match: A0A6J1E4N9 (40S ribosomal protein S20-2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430590 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.6e-61
Identity = 124/128 (96.88%), Postives = 125/128 (97.66%), Query Frame = 0


Query: 24  PAVPGSMAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVK 83
           P + GSMAYAAMKPTK GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVK
Sbjct: 28  PRITGSMAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVK 87

Query: 84  GPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE 143
           GPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE
Sbjct: 88  GPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE 147

Query: 144 VEVTIADQ 152
           VEVTIADQ
Sbjct: 148 VEVTIADQ 155

[Close]

BLAST of MELO3C006829 vs. ExPASy TrEMBL
Match: A0A5A7VKH9 (40S ribosomal protein S20-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00570 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.3e-60
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 30  MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 89
           MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 90  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 149
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 150 DQ 152
           DQ
Sbjct: 121 DQ 122

[Close]

BLAST of MELO3C006829 vs. ExPASy TrEMBL
Match: A0A6J1IAH1 (40S ribosomal protein S20-2-like OS=Cucurbita maxima OX=3661 GN=LOC111471601 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.3e-60
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 30  MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 89
           MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 90  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 149
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 150 DQ 152
           DQ
Sbjct: 121 DQ 122

[Close]

BLAST of MELO3C006829 vs. ExPASy TrEMBL
Match: A0A6J1FSX5 (40S ribosomal protein S20-2-like OS=Cucurbita moschata OX=3662 GN=LOC111447005 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.3e-60
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 30  MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 89
           MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 90  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 149
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 150 DQ 152
           DQ
Sbjct: 121 DQ 122

[Close]

BLAST of MELO3C006829 vs. TAIR 10
Match: AT3G47370.2 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 217.2 bits (552), Expect = 8.8e-57
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 30  MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 89
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 90  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 149
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 150 D 151
           D
Sbjct: 121 D 121

[Close]

BLAST of MELO3C006829 vs. TAIR 10
Match: AT3G47370.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 217.2 bits (552), Expect = 8.8e-57
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 30  MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 89
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 90  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 149
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 150 D 151
           D
Sbjct: 121 D 121

[Close]

BLAST of MELO3C006829 vs. TAIR 10
Match: AT3G47370.3 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 217.2 bits (552), Expect = 8.8e-57
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 30  MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 89
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 90  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 149
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 150 D 151
           D
Sbjct: 121 D 121

[Close]

BLAST of MELO3C006829 vs. TAIR 10
Match: AT3G45030.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 214.2 bits (544), Expect = 7.5e-56
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 31  AYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 90
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 91  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 150
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]

BLAST of MELO3C006829 vs. TAIR 10
Match: AT5G62300.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 214.2 bits (544), Expect = 7.5e-56
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 31  AYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 90
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 91  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 150
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

The following BLAST results are available for this feature:

BLAST of MELO3C006829 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922646.1	3.2e-61	96.88	40S ribosomal protein S20-2-like isoform X1 [Cucurbita moschata]	[more]
KAG6576788.1	3.2e-61	96.88	40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022922647.1	3.2e-61	96.88	40S ribosomal protein S20-2-like isoform X2 [Cucurbita moschata]	[more]
KAG6600158.1	7.2e-61	99.19	Glutathione S-transferase U17, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_008439109.1	2.7e-60	100.00	PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo] >XP_022941728.1 40S r...	[more]

BLAST of MELO3C006829 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STY6	1.2e-55	91.74	40S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1	[more]
P49200	1.0e-54	90.83	40S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2	[more]
P35686	2.0e-50	83.74	40S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2...	[more]
P23403	7.8e-42	74.77	40S ribosomal protein S20 OS=Xenopus laevis OX=8355 GN=rps20 PE=1 SV=1	[more]
Q3ZBH8	1.3e-41	70.09	40S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1	[more]

BLAST of MELO3C006829 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E3W2	1.6e-61	96.88	40S ribosomal protein S20-2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1E4N9	1.6e-61	96.88	40S ribosomal protein S20-2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A5A7VKH9	1.3e-60	100.00	40S ribosomal protein S20-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A6J1IAH1	1.3e-60	100.00	40S ribosomal protein S20-2-like OS=Cucurbita maxima OX=3661 GN=LOC111471601 PE=...	[more]
A0A6J1FSX5	1.3e-60	100.00	40S ribosomal protein S20-2-like OS=Cucurbita moschata OX=3662 GN=LOC111447005 P...	[more]

BLAST of MELO3C006829 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47370.2	8.8e-57	91.74	Ribosomal protein S10p/S20e family protein	[more]
AT3G47370.1	8.8e-57	91.74	Ribosomal protein S10p/S20e family protein	[more]
AT3G47370.3	8.8e-57	91.74	Ribosomal protein S10p/S20e family protein	[more]
AT3G45030.1	7.5e-56	90.83	Ribosomal protein S10p/S20e family protein	[more]
AT5G62300.1	7.5e-56	90.83	Ribosomal protein S10p/S20e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001848	Ribosomal protein S10	PRINTS	PR00971	RIBOSOMALS10	coord: 108..122 score: 52.69 coord: 86..101 score: 42.43 coord: 51..64 score: 44.51
IPR001848	Ribosomal protein S10	PANTHER	PTHR11700	30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER	coord: 30..150
IPR001848	Ribosomal protein S10	HAMAP	MF_00508	Ribosomal_S10	coord: 49..148 score: 18.389648
IPR027486	Ribosomal protein S10 domain	SMART	SM01403	Ribosomal_S10_2	coord: 53..147 e-value: 2.0E-38 score: 143.7
IPR027486	Ribosomal protein S10 domain	PFAM	PF00338	Ribosomal_S10	coord: 53..147 e-value: 1.3E-27 score: 95.9
IPR005729	Ribosomal protein S10, eukaryotic/archaeal	TIGRFAM	TIGR01046	TIGR01046	coord: 50..148 e-value: 3.5E-40 score: 134.4
IPR036838	Ribosomal protein S10 domain superfamily	GENE3D	3.30.70.600	Ribosomal protein S10 domain	coord: 36..150 e-value: 1.2E-48 score: 166.0
IPR036838	Ribosomal protein S10 domain superfamily	SUPERFAMILY	54999	Ribosomal protein S10	coord: 51..148
None	No IPR available	PANTHER	PTHR11700:SF27	RIBOSOMAL PROTEIN S10-RELATED	coord: 30..150
IPR018268	Ribosomal protein S10, conserved site	PROSITE	PS00361	RIBOSOMAL_S10	coord: 75..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006829.1	MELO3C006829.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome