MELO3C006808.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C006808.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Unknown protein
Location	chr06: 6612669 .. 6613360 (-)
RNA-Seq Expression	MELO3C006808.jh1
Synteny	MELO3C006808.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

AGACCTCCAAAGGTTCCATTTCTCCAAAAGGCTACTCCCCAATGGCCAGAGATATCCTTCCCTTCGAATTCGGGGGCGGCGGCGGGGGCGAGAGCGAGCGCGGCGGAGACGTTTTCTTCGGTAAGGATGATATGAAAGAGTACGCATGGGATGGAGTTTACACCGAAGAAACAGTCCGATTCATCGAAACAGAATCCGCCAAGAAAGCTCTGAGAAAGAGAAGCAGAAGAAAGCTAGAACCATTCAATTGCTTTGAGTTCTTGAGAATCGTTTGCTCTTTCAAATTCTAACTCTCTTCATTCTCTTTTAATTTTTCCTCTTTGTAGATCGAATGAAATGTTCATATCCATTTAATGATCTTCGATCCTTTTTCTTGTGCTTCGCTCGATCTCGATGCTCGTTCATCGGAATTTTCTGAGCCAGGATTTTGTAATTAGAAATTGTGATTTCTGTATATACTTCTATTGTTTAGAAAGCTTCAGAATGTGTATAAAATCTCTTTCTCTTTTGCAATTTCAATTTCAATTTGGTGTGAGGAATTTTCTTGGATTTCAAACAGCATCGGGTCAACCGAGTGACGCAGATTTTGCTTGAATCGATGAACTCGAATTCTTTGGAAAGTAAATTACATTTTTTTTCATGCGTAAACGTGACTTCGTTTACGCAAACTAATGTCTACATTTAGTGAAATT

mRNA sequence

AGACCTCCAAAGGTTCCATTTCTCCAAAAGGCTACTCCCCAATGGCCAGAGATATCCTTCCCTTCGAATTCGGGGGCGGCGGCGGGGGCGAGAGCGAGCGCGGCGGAGACGTTTTCTTCGGTAAGGATGATATGAAAGAGTACGCATGGGATGGAGTTTACACCGAAGAAACAGTCCGATTCATCGAAACAGAATCCGCCAAGAAAGCTCTGAGAAAGAGAAGCAGAAGAAAGCTAGAACCATTCAATTGCTTTGAGTTCTTGAGAATCGTTTGCTCTTTCAAATTCTAACTCTCTTCATTCTCTTTTAATTTTTCCTCTTTGTAGATCGAATGAAATGTTCATATCCATTTAATGATCTTCGATCCTTTTTCTTGTGCTTCGCTCGATCTCGATGCTCGTTCATCGGAATTTTCTGAGCCAGGATTTTGTAATTAGAAATTGTGATTTCTGTATATACTTCTATTGTTTAGAAAGCTTCAGAATGTGTATAAAATCTCTTTCTCTTTTGCAATTTCAATTTCAATTTGGTGTGAGGAATTTTCTTGGATTTCAAACAGCATCGGGTCAACCGAGTGACGCAGATTTTGCTTGAATCGATGAACTCGAATTCTTTGGAAAGTAAATTACATTTTTTTTCATGCGTAAACGTGACTTCGTTTACGCAAACTAATGTCTACATTTAGTGAAATT

Coding sequence (CDS)

ATGGCCAGAGATATCCTTCCCTTCGAATTCGGGGGCGGCGGCGGGGGCGAGAGCGAGCGCGGCGGAGACGTTTTCTTCGGTAAGGATGATATGAAAGAGTACGCATGGGATGGAGTTTACACCGAAGAAACAGTCCGATTCATCGAAACAGAATCCGCCAAGAAAGCTCTGAGAAAGAGAAGCAGAAGAAAGCTAGAACCATTCAATTGCTTTGAGTTCTTGAGAATCGTTTGCTCTTTCAAATTCTAA

Protein sequence

MARDILPFEFGGGGGGESERGGDVFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKRSRRKLEPFNCFEFLRIVCSFKF

Homology

[Close]

BLAST of MELO3C006808.jh1 vs. NCBI nr
Match: KAA0067665.1 (hypothetical protein E6C27_scaffold70G00340 [Cucumis melo var. makuwa] >TYK23669.1 hypothetical protein E5676_scaffold577G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 170 bits (430), Expect = 3.12e-53
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MARDILPFEFGGGGGGESERGGDVFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR 60
          MARDILPFEFGGGGGGESERGGDVFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR
Sbjct: 1  MARDILPFEFGGGGGGESERGGDVFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR 60

Query: 61 SRRKLEPFNCFEFLRIVCSFKF 82
          SRRKLEPFNCFEFLRIVCSFKF
Sbjct: 61 SRRKLEPFNCFEFLRIVCSFKF 82

[Close]

BLAST of MELO3C006808.jh1 vs. NCBI nr
Match: KGN57263.1 (hypothetical protein Csa_009618 [Cucumis sativus])

HSP 1 Score: 160 bits (404), Expect = 2.90e-49
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MARDILPFEFGGGGGGESERGGDVFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR 60
          MARDILPFEFGGGG GESERGGD+FFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR
Sbjct: 1  MARDILPFEFGGGGAGESERGGDIFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR 60

Query: 61 SRRKLEPFNCFEFLRIVCSFKF 82
          SRRKLEPFNCFEFL+IV  FKF
Sbjct: 61 SRRKLEPFNCFEFLKIVWCFKF 82

[Close]

BLAST of MELO3C006808.jh1 vs. NCBI nr
Match: KAG6576802.1 (hypothetical protein SDJN03_24376, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014829.1 hypothetical protein SDJN02_22458, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112 bits (279), Expect = 4.15e-30
Identity = 56/89 (62.92%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 1  MARDILPFEFGGGGGGES-------ERGGDVFFGKDDMKEYAWDGVYTEETVRFIETESA 60
          MARD LP+EFG GGGG+S       +  GD+FFGKDDMK Y WD V+TEETVRF+ETESA
Sbjct: 1  MARDTLPYEFGVGGGGKSCSSPSKYDVVGDIFFGKDDMKGYVWDEVFTEETVRFLETESA 60

Query: 61 KKALRKRSRRKLEPFNCFEFLRIVCSFKF 82
           + LRKRS+R+LE F CFEFL+ +  F F
Sbjct: 61 VEVLRKRSKRRLETFKCFEFLKFLWCFNF 89

[Close]

BLAST of MELO3C006808.jh1 vs. NCBI nr
Match: KAG6600176.1 (hypothetical protein SDJN03_05409, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.6 bits (174), Expect = 1.01e-12
Identity = 37/62 (59.68%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 1  MARDILPFEFGGGGGGESERG------------GDVFFGKDDMKEYAWDGVYTEETVRFI 50
          MA D  PFEFGG G G    G            GD+FFGKDDMKEYAWDG +TE+TVRFI
Sbjct: 1  MAIDTTPFEFGGDGDGGRRCGKSCSRPSKYDVVGDIFFGKDDMKEYAWDGAFTEKTVRFI 60

[Close]

BLAST of MELO3C006808.jh1 vs. NCBI nr
Match: KAG7030840.1 (hypothetical protein SDJN02_04877, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 71.6 bits (174), Expect = 1.77e-12
Identity = 37/62 (59.68%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 1  MARDILPFEFGGGGGGESERG------------GDVFFGKDDMKEYAWDGVYTEETVRFI 50
          MA D  PFEFGG G G    G            GD+FFGKDDMKEYAWDG +TE+TVRFI
Sbjct: 1  MAIDTTPFEFGGDGDGGRRCGKSCSRPSKYDVVGDIFFGKDDMKEYAWDGAFTEKTVRFI 60

[Close]

BLAST of MELO3C006808.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DK72 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00350 PE=4 SV=1)

HSP 1 Score: 170 bits (430), Expect = 1.51e-53
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MARDILPFEFGGGGGGESERGGDVFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR 60
          MARDILPFEFGGGGGGESERGGDVFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR
Sbjct: 1  MARDILPFEFGGGGGGESERGGDVFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR 60

Query: 61 SRRKLEPFNCFEFLRIVCSFKF 82
          SRRKLEPFNCFEFLRIVCSFKF
Sbjct: 61 SRRKLEPFNCFEFLRIVCSFKF 82

[Close]

BLAST of MELO3C006808.jh1 vs. ExPASy TrEMBL
Match: A0A0A0L658 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175640 PE=4 SV=1)

HSP 1 Score: 160 bits (404), Expect = 1.40e-49
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MARDILPFEFGGGGGGESERGGDVFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR 60
          MARDILPFEFGGGG GESERGGD+FFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR
Sbjct: 1  MARDILPFEFGGGGAGESERGGDIFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR 60

Query: 61 SRRKLEPFNCFEFLRIVCSFKF 82
          SRRKLEPFNCFEFL+IV  FKF
Sbjct: 61 SRRKLEPFNCFEFLKIVWCFKF 82

The following BLAST results are available for this feature:

BLAST of MELO3C006808.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067665.1	3.12e-53	100.00	hypothetical protein E6C27_scaffold70G00340 [Cucumis melo var. makuwa] >TYK23669...	[more]
KGN57263.1	2.90e-49	93.90	hypothetical protein Csa_009618 [Cucumis sativus]	[more]
KAG6576802.1	4.15e-30	62.92	hypothetical protein SDJN03_24376, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6600176.1	1.01e-12	59.68	hypothetical protein SDJN03_05409, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7030840.1	1.77e-12	59.68	hypothetical protein SDJN02_04877, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of MELO3C006808.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C006808.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DK72	1.51e-53	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L658	1.40e-49	93.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175640 PE=4 SV=1	[more]

BLAST of MELO3C006808.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006808.jh1.t1	MELO3C006808.jh1.t1	mRNA