MELO3C006766 (gene) Melon (DHL92) v4

Overview


Name	MELO3C006766
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	50S ribosomal protein L18
Location	chr06: 5790852 .. 5794508 (+)
RNA-Seq Expression	MELO3C006766
Synteny	MELO3C006766

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAACCATTGCGCAAAGTGGATAAGGCAACCCCAACTCAACTACAAAACACTATCAAATCCCCAAGAAGAAGGAGACGAGAGAAGCAGGGCGACAATGGCTTCAACCACTGCTCCATGTTCGTTCCTGGGCACTTCCTTTCTAAGCGTATCTTATTCACAGAACATTCTCAACCGTCCCCACCTTCATTTTCCGGCAACTACTTCAAGTTCCGGCCGTCACTCTCTTGTTGTCGAAGCCAAGGCTACGACCAGACGAGAGGACCGTGCAGCTCGCCATTCTCGCATTAGGAAGAAGGTAATTCCACCCTCTAATTTGGGTCAATTTTAAATATTGTGCTAATTCCGCGTTTCTCTTGTTCAACATTGTTCTTCTGTACCTTGAATAGCTTTAGAGATTGGCTGGAAATGGAGGGGGTCTTTTGATTTTTCTTGTAATGGATGTATCGGGGTTTCATTTTATTACCCTATGTTATGTGCTAAACAATTGTTAGTGTACTTCCGTTTGGATATTGTTTTAGTTATCTGTTTATTGTGAACTTCTAAAGGATTGCTTTGATAGCTTATCAATTCATTGATTTTTTTTTCTCTTTTTAGTTTAGAAGTTCTGGTTAGATTAGCTAATAAGTTACTTGTTTCTTAGAACATTGCCACTACTTCGATACACAAGTCATGGGTTTCTGAAGATTGAGGGAAAGAGGAAACAGAATAAAGAAATTGTTGTTTTTCATTGCAGGGAGTCAAAACTTCAAAATAAAATTAATATACTCTTCTCGGCTTCAAATGATAGTCGTGATAGCAGTAATCAAAACTTGTTTCGTGTTAGGATCTGCTAAGATTTACATTTCTCTCCTTTGGAACTCAGATGACTTGAAAGTAGATTTATTTGTTGGCGAAACCAAAATCTATAGGAAGAAGTAGCTTGTACAAAGAATAGATAGGCAACAAAAGGTTGGACACCAGAACACAAAACAAAATAAGAAAGATATCCCCCATTTTATATATATGTTAGTTAAGATATAAGCCTCACATGAGGATCCACAATTGACTGCAGTGAAAATGGTGAGATGGTGATCGCCCAAAGCTGGAGGCCCAATATGTTACTAGAACATCAACCCTTCAATTATCAATGTTGAGCAAAAAAAACATGGTTACTATATGTTCCAGCGTGAGTGTTGAATCTAATGCTACCATTCTACAAAGGAATGCGTCGTTTATCAGATCTTTTAGCATTGTAATTCTCCAGTAATGGGACAGGGTAGCATTCTGCATAGGACTTCAGAGACATTAAAAGAGCAACAAGGTAATGCTTAGTGGAGAAAACACTGTTGAAAGCTTTTCCTTGAACCTCTACCAAGTTGCCCAATTACATGCTCGAACTATTTTCTGTGCTCCACTGTTATTCACGTGGAAGATACATGCAGCATGCACAGAACAAGAGGATCATGGCACATGCACCTGCATACAATATGAATCAAGTTCATGCATCCAGTGGATGAGTAGTTTCAAATCCAAATTTTCCTTATCCATGGAACTAAGCACAGAAACTTGCCCAAGATTATTAAGGAGATCCAAATGGAAGATAAACTTCAGTCAGTCGGCCATCTTCAAGGAGATTAGCACTAGGACTTCCCACAGTTGTGGTGATTGGGCGAGATTTAGTAGGTTTAAGTTCAAATGGAAGGTTTTGATCTAAAGATTCAAGCTACTGGATAGAGTTAATTGACACTATTTCTACGAAGCAAGGATTTAGTTGAACATTAAAGAGCTCTGTTGGCCTTGATGAGAGGGAAGAGAATAAAAGTGCAAGAGGTTGGTGAGGCAGTCATTATCATTGAGGGAGCATGTAAGACTGACACTTTTTTTTTCATTACTATCGATGCGGACAAAGTTGGGAAGCATTTTTCTGAATCTTGTGGGTTGGATTTTGATTTCAGCTTTCTTGCATGTTCACTGTTTCCCTAGTTGTAGAATGGTTGTACTTAACTAGGGCAAATTGGAACAAAACACTACATCCTTGACCTGGATATGACACTTGAGAAGATAGCATTTCCATTCATGCCCTACGATCTGTCTTCAACTGAATTTTTTTTAAAATACATTTAGAATGGTTAAATAAAGTCAATAGGATTTTCAATGGGAAGTATATCTTCCTGCTCTAACTCAAAGATTTACGTTTACTTCTCTCTATTTAAACATCTGAACCTGTAGTTACACGATCAATTGAATCTTTTTAGTCTTCCTTTTTTCATATATCTGGATCCCTTTAGAACTACTTTGGTTTATAATTGTTGTCTTTATAATAGCAAATTAATCCTTGCGGGTATAGGTGGTAGATACTAAAGTACAGTTCACCTGTACAATCATCTTTTGTCTTAGGTTGAAGGAACAACGGAGAGGCCAAGGTTATCTGTTTTCCGTTCGAATAAGCATTTGTATGTACAGGTTATCGATGACTCCAAGATGCATACGCTTGCGGCAGTTTCTACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACAGTGCTGGCCCTACCATCGTGAGTCACTATAACTAAAACGTAGTTGATTGATCTACTGATGTAGATATATATGTGTATGTGTGTGTGTGTGTGTGTATATATATATTGGTCCTATTATTTTCCATTGGAGTCCTATAGTAATCTTTAGCTTTCATCCACCCTTTTCCAGACTTTGTTCCACTAGTTTGATGTCTATGTAGATCTTCTTACCTATACTAAATAAGATACCATCCATTAAAATCGGCCCACTAATTTGGTCAGATATTCTGAGAGATTTGATTACTGAACTTGAATACATAAATGAAACAGCAAAAGAAAAGAAAAAACTATTACTGCCAAGACCAATAGCTAGTCTTTAAAGGAACATTAAGTTTAGTTATTGTACAGAGCCTTACTTGAATATATGAGTTCTATCTGTATGTCAACAAATTAAAATTTTTAGTCTCTAAAGGCTAAATTTGAAAAAGTTTTGTCTTACTTGTCATTCTATTAACACTGCTAACCAAACCTACGACGTGACAAAGACTGATAGAATTACAAGCCCAAGTTAATGGATGAAATTAAGTTTAGAGACCAAATAGATGTCTTGATCGAAGCAGAATTCTTATTATTATGTGGAAATATGATTGTTACAGGAAGTGGCAAAGAAAGTAGGGGAAGCGATTGCAAAATCTTGTTTGGAGAAAGGAATAACAAAAGTTGCATTCGATCGCGGTGGATATCCGTACCATGGACGAGTAGAAGCACTTGCTGATGCGGCTCGTGAACATGGCCTTCAATTCTGAGAATCCTTGTGTGTGTTTTTTTCATATCTTTTAGCTTGGTATTCTGTAACAGTGCCATCATTTGAGATTATTTTTCTGTTGATTAGACGAGAGTTATAGTCGTTTGACCTGAAATTAAGAGGGAAATTGTTTATTGATTCATCTTTTCTTGGCATATCAATGTCTCTAGGCCAGTTTAACTAGTGTTTGCAAACATTTAGATGAACAAAATTCAAAAGGAGATGTTCTTTTAGTACAAATAAGGATAGGGGATTGGAATCACATACATCTCCATTCTTGCCACGTATTGATGTCAATTGAGTTAAATTCCTTTTGGCACAAAAAATAAAAAGTTTTCTATTTATAACCT

mRNA sequence

GAAAAACCATTGCGCAAAGTGGATAAGGCAACCCCAACTCAACTACAAAACACTATCAAATCCCCAAGAAGAAGGAGACGAGAGAAGCAGGGCGACAATGGCTTCAACCACTGCTCCATGTTCGTTCCTGGGCACTTCCTTTCTAAGCGTATCTTATTCACAGAACATTCTCAACCGTCCCCACCTTCATTTTCCGGCAACTACTTCAAGTTCCGGCCGTCACTCTCTTGTTGTCGAAGCCAAGGCTACGACCAGACGAGAGGACCGTGCAGCTCGCCATTCTCGCATTAGGAAGAAGGTTGAAGGAACAACGGAGAGGCCAAGGTTATCTGTTTTCCGTTCGAATAAGCATTTGTATGTACAGGTTATCGATGACTCCAAGATGCATACGCTTGCGGCAGTTTCTACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACAGTGCTGGCCCTACCATCGAAGTGGCAAAGAAAGTAGGGGAAGCGATTGCAAAATCTTGTTTGGAGAAAGGAATAACAAAAGTTGCATTCGATCGCGGTGGATATCCGTACCATGGACGAGTAGAAGCACTTGCTGATGCGGCTCGTGAACATGGCCTTCAATTCTGAGAATCCTTGTGTGTGTTTTTTTCATATCTTTTAGCTTGGTATTCTGTAACAGTGCCATCATTTGAGATTATTTTTCTGTTGATTAGACGAGAGTTATAGTCGTTTGACCTGAAATTAAGAGGGAAATTGTTTATTGATTCATCTTTTCTTGGCATATCAATGTCTCTAGGCCAGTTTAACTAGTGTTTGCAAACATTTAGATGAACAAAATTCAAAAGGAGATGTTCTTTTAGTACAAATAAGGATAGGGGATTGGAATCACATACATCTCCATTCTTGCCACGTATTGATGTCAATTGAGTTAAATTCCTTTTGGCACAAAAAATAAAAAGTTTTCTATTTATAACCT

Coding sequence (CDS)

AAAAACCATTGCGCAAAGTGGATAAGGCAACCCCAACTCAACTACAAAACACTATCAAATCCCCAAGAAGAAGGAGACGAGAGAAGCAGGGCGACAATGGCTTCAACCACTGCTCCATGTTCGTTCCTGGGCACTTCCTTTCTAAGCGTATCTTATTCACAGAACATTCTCAACCGTCCCCACCTTCATTTTCCGGCAACTACTTCAAGTTCCGGCCGTCACTCTCTTGTTGTCGAAGCCAAGGCTACGACCAGACGAGAGGACCGTGCAGCTCGCCATTCTCGCATTAGGAAGAAGGTTGAAGGAACAACGGAGAGGCCAAGGTTATCTGTTTTCCGTTCGAATAAGCATTTGTATGTACAGGTTATCGATGACTCCAAGATGCATACGCTTGCGGCAGTTTCTACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACAGTGCTGGCCCTACCATCGAAGTGGCAAAGAAAGTAGGGGAAGCGATTGCAAAATCTTGTTTGGAGAAAGGAATAACAAAAGTTGCATTCGATCGCGGTGGATATCCGTACCATGGACGAGTAGAAGCACTTGCTGATGCGGCTCGTGAACATGGCCTTCAATTCTGA

Protein sequence

KNHCAKWIRQPQLNYKTLSNPQEEGDERSRATMASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF

Homology

[Close]

BLAST of MELO3C006766 vs. NCBI nr
Match: XP_008439021.1 (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo] >KAA0052138.1 50S ribosomal protein L18 [Cucumis melo var. makuwa] >TYK05105.1 50S ribosomal protein L18 [Cucumis melo var. makuwa])

HSP 1 Score: 329.7 bits (844), Expect = 1.7e-86
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 33  MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 92
           MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR
Sbjct: 1   MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 60

Query: 93  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 152
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 153 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 203
           IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]

BLAST of MELO3C006766 vs. NCBI nr
Match: XP_004147640.1 (50S ribosomal protein L18, chloroplastic [Cucumis sativus] >KGN57222.1 hypothetical protein Csa_010063 [Cucumis sativus])

HSP 1 Score: 321.6 bits (823), Expect = 4.8e-84
Identity = 165/170 (97.06%), Postives = 167/170 (98.24%), Query Frame = 0


Query: 33  MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 92
           MASTTAPCSFL TSFL+VSYSQNILNRPHLHFP TTSSSGRHSLVVEAKATTRREDR AR
Sbjct: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60

Query: 93  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 152
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 153 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 203
           IEVAKK+GEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]

BLAST of MELO3C006766 vs. NCBI nr
Match: XP_038885362.1 (50S ribosomal protein L18, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 318.2 bits (814), Expect = 5.3e-83
Identity = 164/170 (96.47%), Postives = 167/170 (98.24%), Query Frame = 0


Query: 33  MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 92
           MAS TAP SFLGTSFLSVSYSQN+ NRPHLHFPATTSSSGRHSLVVEA+ATTRREDR+AR
Sbjct: 1   MASATAPLSFLGTSFLSVSYSQNLRNRPHLHFPATTSSSGRHSLVVEAQATTRREDRSAR 60

Query: 93  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 152
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 153 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 203
           IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]

BLAST of MELO3C006766 vs. NCBI nr
Match: XP_023538937.1 (50S ribosomal protein L18, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 298.1 bits (762), Expect = 5.6e-77
Identity = 154/170 (90.59%), Postives = 161/170 (94.71%), Query Frame = 0


Query: 33  MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 92
           M+S  AP SFLGTS L VSYSQN+   PHL+FP+TTSSSGRHSLV+EAKATTRREDRAAR
Sbjct: 1   MSSAIAPLSFLGTSILGVSYSQNLRIPPHLNFPSTTSSSGRHSLVIEAKATTRREDRAAR 60

Query: 93  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 152
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY++GPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120

Query: 153 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 203
           IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL F
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 170

[Close]

BLAST of MELO3C006766 vs. NCBI nr
Match: KAG6597602.1 (50S ribosomal protein L18, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 295.8 bits (756), Expect = 2.8e-76
Identity = 153/170 (90.00%), Postives = 160/170 (94.12%), Query Frame = 0


Query: 33  MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 92
           M S  AP SFLG+S L VSYSQN+   PHL+FP+TTSSSGRHSLV+EAKATTRREDRAAR
Sbjct: 1   MPSAIAPLSFLGSSILGVSYSQNLRIPPHLNFPSTTSSSGRHSLVIEAKATTRREDRAAR 60

Query: 93  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 152
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY++GPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120

Query: 153 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 203
           IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL F
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 170

[Close]

BLAST of MELO3C006766 vs. ExPASy Swiss-Prot
Match: Q9SX68 (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 8.2e-55
Identity = 111/138 (80.43%), Postives = 119/138 (86.23%), Query Frame = 0


Query: 65  PATTSSSGRHSLVVEAKATTRREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVID 124
           P ++SS    S+VVEAK  T  EDR ARHSRIRKKV GTTERPRL VFRSNKHLYVQVID
Sbjct: 33  PWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVID 92

Query: 125 DSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPY 184
           D+KMHTLA+ ST QK ISE  DY++GPTIEVAKKVGE IAKSCLEKGITKVAFDRGGYPY
Sbjct: 93  DTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPY 152

Query: 185 HGRVEALADAAREHGLQF 203
           HGR+EALA AAREHGLQF
Sbjct: 153 HGRIEALAAAAREHGLQF 170

[Close]

BLAST of MELO3C006766 vs. ExPASy Swiss-Prot
Match: P82195 (50S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 PE=1 SV=3)

HSP 1 Score: 214.9 bits (546), Expect = 8.2e-55
Identity = 118/170 (69.41%), Postives = 133/170 (78.24%), Query Frame = 0


Query: 33  MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 92
           MA+ T+   F  T   S S S   L+ P    P   +   +   +++AKA TRREDR AR
Sbjct: 1   MAAATSLSFFHSTLASSSSSSVQQLSLP----PKFVNFRPQTLPLIQAKAHTRREDRTAR 60

Query: 93  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 152
           H RIRKKVEGT ERPRL VFRSNKHLYVQVIDD+KMHTLAA STMQK+ISE +DYSAGPT
Sbjct: 61  HVRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSAGPT 120

Query: 153 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 203
           +EVA+K+GE IAKSCLEKGITKVAFDRGGYPYHGRV+ALADAAREHGL F
Sbjct: 121 VEVAQKIGEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGLVF 166

[Close]

BLAST of MELO3C006766 vs. ExPASy Swiss-Prot
Match: Q8SAY0 (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.4e-46
Identity = 98/145 (67.59%), Postives = 117/145 (80.69%), Query Frame = 0


Query: 60  PHLHFPATTSSSGRHSLVVEA--KATTRREDRAARHSRIRKKVEGTTERPRLSVFRSNKH 119
           P +  P+ + +  R SLVV A  K +T + DR ARH R+RKKV GTTERPRLSVFRSNKH
Sbjct: 26  PAISAPSPSQARRRASLVVVAKVKVSTPQADRIARHVRLRKKVSGTTERPRLSVFRSNKH 85

Query: 120 LYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAF 179
           LY QVIDD+K  TL + STM KS+S+ L+YSAGPT+EVA+K+GE IAKSCLEKGITKV F
Sbjct: 86  LYAQVIDDTKSCTLVSASTMHKSLSKDLEYSAGPTVEVAQKIGEVIAKSCLEKGITKVVF 145

Query: 180 DRGGYPYHGRVEALADAAREHGLQF 203
           DRGG+ YHGR++ALADAARE+GL F
Sbjct: 146 DRGGFLYHGRIKALADAARENGLDF 170

[Close]

BLAST of MELO3C006766 vs. ExPASy Swiss-Prot
Match: Q5L3S3 (50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=rplR PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.2e-32
Identity = 76/118 (64.41%), Postives = 88/118 (74.58%), Query Frame = 0


Query: 85  RREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 144
           R   R  RH+RIRKK+ GT ERPRLSVFRSNKH+Y Q+IDD+K  T+ + ST+ K    G
Sbjct: 7   RNAVRKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDTKSSTIVSASTLDKEF--G 66

Query: 145 LDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 203
           LD  +   IE AKKVGE +AK  LEKGI KV FDRGGY YHGRV+ALADAARE GL+F
Sbjct: 67  LD--STNNIEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGLEF 120

[Close]

BLAST of MELO3C006766 vs. ExPASy Swiss-Prot
Match: P09415 (50S ribosomal protein L18 OS=Geobacillus stearothermophilus OX=1422 GN=rplR PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.2e-32
Identity = 76/118 (64.41%), Postives = 89/118 (75.42%), Query Frame = 0


Query: 85  RREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 144
           R   R  RH+RIRKK+ GTTERPRLSVFRSNKH+Y Q+IDD+K  T+ + ST+ K    G
Sbjct: 7   RNAVRKKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEF--G 66

Query: 145 LDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 203
           LD  +   IE AKKVGE +AK  LEKGI +V FDRGGY YHGRV+ALADAARE GL+F
Sbjct: 67  LD--STNNIEAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLEF 120

[Close]

BLAST of MELO3C006766 vs. ExPASy TrEMBL
Match: A0A5A7UA63 (50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1769G00090 PE=3 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 8.5e-87
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 33  MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 92
           MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR
Sbjct: 1   MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 60

Query: 93  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 152
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 153 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 203
           IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]

BLAST of MELO3C006766 vs. ExPASy TrEMBL
Match: A0A1S3AXQ6 (50S ribosomal protein L18, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483939 PE=3 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 8.5e-87
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 33  MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 92
           MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR
Sbjct: 1   MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 60

Query: 93  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 152
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 153 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 203
           IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]

BLAST of MELO3C006766 vs. ExPASy TrEMBL
Match: A0A0A0L9A4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171790 PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.3e-84
Identity = 165/170 (97.06%), Postives = 167/170 (98.24%), Query Frame = 0


Query: 33  MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 92
           MASTTAPCSFL TSFL+VSYSQNILNRPHLHFP TTSSSGRHSLVVEAKATTRREDR AR
Sbjct: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60

Query: 93  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 152
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 153 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 203
           IEVAKK+GEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]

BLAST of MELO3C006766 vs. ExPASy TrEMBL
Match: A0A6J1IAC8 (50S ribosomal protein L18, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111470699 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 8.8e-76
Identity = 152/170 (89.41%), Postives = 161/170 (94.71%), Query Frame = 0


Query: 33  MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 92
           M+S TA  SFLG+S L VSYSQN+   PHL+FP++TSSSGRHSLV+EAKATTRREDRAAR
Sbjct: 1   MSSATAFISFLGSSILGVSYSQNLRVPPHLNFPSSTSSSGRHSLVIEAKATTRREDRAAR 60

Query: 93  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 152
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY++GPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120

Query: 153 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 203
           IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL F
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 170

[Close]

BLAST of MELO3C006766 vs. ExPASy TrEMBL
Match: A0A6J1C7Y4 (50S ribosomal protein L18, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111009192 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 8.8e-76
Identity = 149/170 (87.65%), Postives = 158/170 (92.94%), Query Frame = 0


Query: 33  MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 92
           M++  +PCSFLG+SFLSVSY Q + NRP  +FP  TSSSGRHSL+VEAKATTRREDRAAR
Sbjct: 1   MSAAISPCSFLGSSFLSVSYPQKLRNRPQFNFPVPTSSSGRHSLLVEAKATTRREDRAAR 60

Query: 93  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 152
           HSRIRKKVEGT ERPRLSV+RSNKHLYVQVIDDSKMHTLAA STMQKSISEGLDYS+GPT
Sbjct: 61  HSRIRKKVEGTPERPRLSVYRSNKHLYVQVIDDSKMHTLAAASTMQKSISEGLDYSSGPT 120

Query: 153 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 203
           IEVAKKVGE IAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]

BLAST of MELO3C006766 vs. TAIR 10
Match: AT1G48350.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 214.9 bits (546), Expect = 5.8e-56
Identity = 111/138 (80.43%), Postives = 119/138 (86.23%), Query Frame = 0


Query: 65  PATTSSSGRHSLVVEAKATTRREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVID 124
           P ++SS    S+VVEAK  T  EDR ARHSRIRKKV GTTERPRL VFRSNKHLYVQVID
Sbjct: 33  PWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVID 92

Query: 125 DSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPY 184
           D+KMHTLA+ ST QK ISE  DY++GPTIEVAKKVGE IAKSCLEKGITKVAFDRGGYPY
Sbjct: 93  DTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPY 152

Query: 185 HGRVEALADAAREHGLQF 203
           HGR+EALA AAREHGLQF
Sbjct: 153 HGRIEALAAAAREHGLQF 170

[Close]

BLAST of MELO3C006766 vs. TAIR 10
Match: AT1G14205.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 78.2 bits (191), Expect = 8.5e-15
Identity = 54/143 (37.76%), Postives = 78/143 (54.55%), Query Frame = 0


Query: 59  RPHLHFP-ATTSSSGRHSLVVEAKATTRREDRAARHSRIRKKVEGTTERPRLSVFRSNKH 118
           +P+  FP   T+ S     V+EA+  TR E    R+ R RKK  GT  +PRLSVF S+K 
Sbjct: 23  KPYPQFPIRITTMSVVKPFVIEARGNTRVESPKTRNRRSRKKFTGTQTKPRLSVFCSDKQ 82

Query: 119 LYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKV-A 178
           LY  ++DD     L   ST+QKSI      +    IE AK+VGE + K+ ++  I ++ +
Sbjct: 83  LYAMLVDDFNKKCLFYASTLQKSIRGDPPCT---VIEAAKRVGEELIKASIDLKINEISS 142

Query: 179 FDRGGYPYHGRVEALADAAREHG 200
           +DR G     R++A   A  +HG
Sbjct: 143 YDRNGNKRGERMQAFEIAIAQHG 162

[Close]

BLAST of MELO3C006766 vs. TAIR 10
Match: AT3G17626.1 (structural constituent of ribosome )

HSP 1 Score: 60.1 bits (144), Expect = 2.4e-09
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 150 GPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHG 187
           G TIE+AKKVGE I KSC+E GITKVAFDR  Y YHG
Sbjct: 11  GSTIEMAKKVGEVIEKSCVENGITKVAFDRAIYTYHG 47

The following BLAST results are available for this feature:

BLAST of MELO3C006766 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439021.1	1.7e-86	100.00	PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo] >KAA0052138.1...	[more]
XP_004147640.1	4.8e-84	97.06	50S ribosomal protein L18, chloroplastic [Cucumis sativus] >KGN57222.1 hypotheti...	[more]
XP_038885362.1	5.3e-83	96.47	50S ribosomal protein L18, chloroplastic-like [Benincasa hispida]	[more]
XP_023538937.1	5.6e-77	90.59	50S ribosomal protein L18, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
KAG6597602.1	2.8e-76	90.00	50S ribosomal protein L18, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of MELO3C006766 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SX68	8.2e-55	80.43	50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
P82195	8.2e-55	69.41	50S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 P...	[more]
Q8SAY0	1.4e-46	67.59	50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=3994...	[more]
Q5L3S3	1.2e-32	64.41	50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 ...	[more]
P09415	1.2e-32	64.41	50S ribosomal protein L18 OS=Geobacillus stearothermophilus OX=1422 GN=rplR PE=1...	[more]

BLAST of MELO3C006766 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UA63	8.5e-87	100.00	50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3AXQ6	8.5e-87	100.00	50S ribosomal protein L18, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483939...	[more]
A0A0A0L9A4	2.3e-84	97.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171790 PE=3 SV=1	[more]
A0A6J1IAC8	8.8e-76	89.41	50S ribosomal protein L18, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A6J1C7Y4	8.8e-76	87.65	50S ribosomal protein L18, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of MELO3C006766 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48350.1	5.8e-56	80.43	Ribosomal L18p/L5e family protein	[more]
AT1G14205.1	8.5e-15	37.76	Ribosomal L18p/L5e family protein	[more]
AT3G17626.1	2.4e-09	75.68	structural constituent of ribosome	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 84..202 e-value: 3.9E-46 score: 156.1
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 50..202
None	No IPR available	GENE3D	3.30.420.100		coord: 83..202 e-value: 9.6E-47 score: 160.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..102
None	No IPR available	PANTHER	PTHR12899:SF3	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 50..202
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 96..200 e-value: 1.50762E-45 score: 144.22
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 85..200
IPR004389	Ribosomal protein L18, bacterial-type	TIGRFAM	TIGR00060	TIGR00060	coord: 86..202 e-value: 3.6E-42 score: 141.3
IPR004389	Ribosomal protein L18, bacterial-type	HAMAP	MF_01337_B	Ribosomal_L18_B	coord: 84..202 score: 28.043905

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006766.1	MELO3C006766.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome