MELO3C006567 (gene) Melon (DHL92) v4

Overview
NameMELO3C006567
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionEF-hand calcium-binding domain-containing protein 4A
Locationchr06: 4167612 .. 4168297 (-)
RNA-Seq ExpressionMELO3C006567
SyntenyMELO3C006567
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTCTTTCACATTTGGGAGGGTGGCAAAAGCAGAACCAACACTTCGAGTTGTTTTTCGATCACTGGGTTGAAAGATGCCAGGATTTGGTGTTTTCCCTCTTGGTAGCTGCTTTGATGGGTGTAGAGACCATGCTCAAGCGTCGGGATTTGGCACTCGAGTATGGAACTTGAGCGATAGGCCAGTGGAGCTGCAGATAAGGGTGGGATCGATATTGAAAAAAGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGTAAGAGTATTTACAAAGCATATATGCCTGGAAGGAGTATGAAGAGCTTGCTTTATTACTATGATGAAGCTTGTCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAACAACAATACGTCAGTCTTGAAGATCTAAGGGAGTTTTCTGAGATCAGAATCTTTAGGGATCATCAACGTGGCTGCATATCGGTTCGTAAGAAACCAAGGCCCGACTTTTGCTGAATTTTACACTCATAAATGTGTTTGCCTTCAACCTCTGTAACTTCTATATGAATGTTGTTCTTGTTTTTGAAGTCTGCAATGTCCACTTGTCTTTCCATGTTCTGTTTTTTCTTTGGAAGTGAACAAAATCAGATGACATTGTTTCGGTGTATTGCTTTAAACACCCAGAGTTCTCTTGCTGTA

mRNA sequence

AGTCTTTCACATTTGGGAGGGTGGCAAAAGCAGAACCAACACTTCGAGTTGTTTTTCGATCACTGGGTTGAAAGATGCCAGGATTTGGTGTTTTCCCTCTTGGTAGCTGCTTTGATGGGTGTAGAGACCATGCTCAAGCGTCGGGATTTGGCACTCGAGTATGGAACTTGAGCGATAGGCCAGTGGAGCTGCAGATAAGGGTGGGATCGATATTGAAAAAAGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGTAAGAGTATTTACAAAGCATATATGCCTGGAAGGAGTATGAAGAGCTTGCTTTATTACTATGATGAAGCTTGTCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAACAACAATACGTCAGTCTTGAAGATCTAAGGGAGTTTTCTGAGATCAGAATCTTTAGGGATCATCAACGTGGCTGCATATCGGTTCGTAAGAAACCAAGGCCCGACTTTTGCTGAATTTTACACTCATAAATGTGTTTGCCTTCAACCTCTGTAACTTCTATATGAATGTTGTTCTTGTTTTTGAAGTCTGCAATGTCCACTTGTCTTTCCATGTTCTGTTTTTTCTTTGGAAGTGAACAAAATCAGATGACATTGTTTCGGTGTATTGCTTTAAACACCCAGAGTTCTCTTGCTGTA

Coding sequence (CDS)

ATGCCAGGATTTGGTGTTTTCCCTCTTGGTAGCTGCTTTGATGGGTGTAGAGACCATGCTCAAGCGTCGGGATTTGGCACTCGAGTATGGAACTTGAGCGATAGGCCAGTGGAGCTGCAGATAAGGGTGGGATCGATATTGAAAAAAGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGTAAGAGTATTTACAAAGCATATATGCCTGGAAGGAGTATGAAGAGCTTGCTTTATTACTATGATGAAGCTTGTCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAACAACAATACGTCAGTCTTGAAGATCTAAGGGAGTTTTCTGAGATCAGAATCTTTAGGGATCATCAACGTGGCTGCATATCGGTTCGTAAGAAACCAAGGCCCGACTTTTGCTGA

Protein sequence

MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKRLKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEIRIFRDHQRGCISVRKKPRPDFC
Homology
BLAST of MELO3C006567 vs. NCBI nr
Match: XP_008438723.1 (PREDICTED: uncharacterized protein LOC103483746 [Cucumis melo] >KAA0049398.1 uncharacterized protein E6C27_scaffold171G006430 [Cucumis melo var. makuwa] >TYK17161.1 uncharacterized protein E5676_scaffold434G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 305.8 bits (782), Expect = 1.9e-79
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCISVRKKPRPDFC 143
           RIFRDHQRGCISVRKKPRPDFC
Sbjct: 121 RIFRDHQRGCISVRKKPRPDFC 142

BLAST of MELO3C006567 vs. NCBI nr
Match: XP_011650993.1 (uncharacterized protein LOC105434839 [Cucumis sativus] >KGN57027.1 hypothetical protein Csa_009946 [Cucumis sativus])

HSP 1 Score: 302.4 bits (773), Expect = 2.1e-78
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTR+WNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCISVRKKPRPDFC 143
           RIFRDHQRGCISVRKK RPDFC
Sbjct: 121 RIFRDHQRGCISVRKKQRPDFC 142

BLAST of MELO3C006567 vs. NCBI nr
Match: XP_038875149.1 (uncharacterized protein LOC120067683 [Benincasa hispida])

HSP 1 Score: 300.4 bits (768), Expect = 8.0e-78
Identity = 136/142 (95.77%), Postives = 141/142 (99.30%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTR+WNLSDRPVELQIRVGSILK+VH+LKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKRVHNLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQY+SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120

Query: 121 RIFRDHQRGCISVRKKPRPDFC 143
           RIFRDHQRGC+SV KKPRPDFC
Sbjct: 121 RIFRDHQRGCVSVHKKPRPDFC 142

BLAST of MELO3C006567 vs. NCBI nr
Match: XP_022936946.1 (uncharacterized protein LOC111443378 [Cucurbita moschata] >KAG6597467.1 hypothetical protein SDJN03_10647, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028926.1 hypothetical protein SDJN02_10109, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 296.6 bits (758), Expect = 1.2e-76
Identity = 136/142 (95.77%), Postives = 140/142 (98.59%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTR+WNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQ++SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120

Query: 121 RIFRDHQRGCISVRKKPRPDFC 143
           RIFRDHQRGC+SVRKKPR  FC
Sbjct: 121 RIFRDHQRGCVSVRKKPRLGFC 142

BLAST of MELO3C006567 vs. NCBI nr
Match: XP_023522910.1 (uncharacterized protein LOC111786960 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 296.2 bits (757), Expect = 1.5e-76
Identity = 135/142 (95.07%), Postives = 140/142 (98.59%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTR+WNLSDRP+ELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPIELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQ++SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120

Query: 121 RIFRDHQRGCISVRKKPRPDFC 143
           RIFRDHQRGC+SVRKKPR  FC
Sbjct: 121 RIFRDHQRGCVSVRKKPRLGFC 142

BLAST of MELO3C006567 vs. ExPASy TrEMBL
Match: A0A5A7U2C9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00050 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 9.2e-80
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCISVRKKPRPDFC 143
           RIFRDHQRGCISVRKKPRPDFC
Sbjct: 121 RIFRDHQRGCISVRKKPRPDFC 142

BLAST of MELO3C006567 vs. ExPASy TrEMBL
Match: A0A1S3AWR3 (uncharacterized protein LOC103483746 OS=Cucumis melo OX=3656 GN=LOC103483746 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 9.2e-80
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCISVRKKPRPDFC 143
           RIFRDHQRGCISVRKKPRPDFC
Sbjct: 121 RIFRDHQRGCISVRKKPRPDFC 142

BLAST of MELO3C006567 vs. ExPASy TrEMBL
Match: A0A0A0L8V0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150060 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.0e-78
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTR+WNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCISVRKKPRPDFC 143
           RIFRDHQRGCISVRKK RPDFC
Sbjct: 121 RIFRDHQRGCISVRKKQRPDFC 142

BLAST of MELO3C006567 vs. ExPASy TrEMBL
Match: A0A6J1F8W2 (uncharacterized protein LOC111443378 OS=Cucurbita moschata OX=3662 GN=LOC111443378 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 5.6e-77
Identity = 136/142 (95.77%), Postives = 140/142 (98.59%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTR+WNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQ++SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120

Query: 121 RIFRDHQRGCISVRKKPRPDFC 143
           RIFRDHQRGC+SVRKKPR  FC
Sbjct: 121 RIFRDHQRGCVSVRKKPRLGFC 142

BLAST of MELO3C006567 vs. ExPASy TrEMBL
Match: A0A6J1I9A2 (LOW QUALITY PROTEIN: uncharacterized protein LOC111472255 OS=Cucurbita maxima OX=3661 GN=LOC111472255 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 6.2e-76
Identity = 134/142 (94.37%), Postives = 138/142 (97.18%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDH QASGFGTR+WNLSDRPVELQIRVG ILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHTQASGFGTRIWNLSDRPVELQIRVGXILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQ++SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120

Query: 121 RIFRDHQRGCISVRKKPRPDFC 143
           RIFRDHQRGC+SVRKKPR  FC
Sbjct: 121 RIFRDHQRGCVSVRKKPRLGFC 142

BLAST of MELO3C006567 vs. TAIR 10
Match: AT3G06145.1 (unknown protein; Has 15 Blast hits to 15 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 163.3 bits (412), Expect = 1.4e-40
Identity = 78/135 (57.78%), Postives = 101/135 (74.81%), Query Frame = 0

Query: 9   LGSCFDGCRDH-----AQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKRLKC 68
           L  C+ GC D         +   TR WNLSDRPVELQIRVGSILK+VH+LKPG SK+L+ 
Sbjct: 28  LRQCYGGCGDRTHLLPCSIATTSTRFWNLSDRPVELQIRVGSILKRVHTLKPGRSKKLRH 87

Query: 69  KSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEIRIF 128
           +SI++AY+  +  +  L YYD+ C PYVW+HE+G D  +MVKQQYVSLEDLR++SEIR+F
Sbjct: 88  RSIHRAYVDDQEGRRWL-YYDDTCLPYVWVHETGTDLSKMVKQQYVSLEDLRDYSEIRVF 147

Query: 129 RDHQRGCISVRKKPR 139
           +D QRGC++V K+ R
Sbjct: 148 KDLQRGCVAVEKRDR 161

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008438723.11.9e-79100.00PREDICTED: uncharacterized protein LOC103483746 [Cucumis melo] >KAA0049398.1 unc... [more]
XP_011650993.12.1e-7898.59uncharacterized protein LOC105434839 [Cucumis sativus] >KGN57027.1 hypothetical ... [more]
XP_038875149.18.0e-7895.77uncharacterized protein LOC120067683 [Benincasa hispida][more]
XP_022936946.11.2e-7695.77uncharacterized protein LOC111443378 [Cucurbita moschata] >KAG6597467.1 hypothet... [more]
XP_023522910.11.5e-7695.07uncharacterized protein LOC111786960 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U2C99.2e-80100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3AWR39.2e-80100.00uncharacterized protein LOC103483746 OS=Cucumis melo OX=3656 GN=LOC103483746 PE=... [more]
A0A0A0L8V01.0e-7898.59Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150060 PE=4 SV=1[more]
A0A6J1F8W25.6e-7795.77uncharacterized protein LOC111443378 OS=Cucurbita moschata OX=3662 GN=LOC1114433... [more]
A0A6J1I9A26.2e-7694.37LOW QUALITY PROTEIN: uncharacterized protein LOC111472255 OS=Cucurbita maxima OX... [more]
Match NameE-valueIdentityDescription
AT3G06145.11.4e-4057.78unknown protein; Has 15 Blast hits to 15 proteins in 7 species: Archae - 0; Bact... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006567.1MELO3C006567.1mRNA