MELO3C006032.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C006032.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	photosynthetic NDH subunit of lumenal location 2, chloroplastic
Location	chr06: 1154145 .. 1155311 (+)
RNA-Seq Expression	MELO3C006032.jh1
Synteny	MELO3C006032.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

CATAATTTAAAGAAATATTAGTGTGACAAAGTGATAAAATGTAAGGTTGTGAATGAATATAATGAAATGGATAAGAAGGTAAAGGGTAAGGCCAGAAAGTGTGTGTGTGTGTGTATGTTCTCCCAAATGGCGAAATGAATGGTAAGAAGCCAAAAGTACATCCAAAGCCATGCCTACCCTTCTTGCCAACGCCAACAGTACTCTCTTCTCCTCACCCATTTCCACTCCCCACAAATCCCTCCACCGCCGCCACTTCCCCATCATCACCGCCTCCCTTCCCATCCACCGTCGCCATATCGCCACAACCCTTGCAGTGGTGATTGGGTTGCAAGCTGCAACACCCCTCGCGCTAGCCCAAAGTTGGGGTACACACTCGTTCATTAAGGAGCGATACTTCGAGCCCGGTTTGTCGGCCGATGAGGCAGTGGCGAGGATAAAACAGACGGCGGAAGGACTTCATAGCATCCGTGAGATGCTTGAGACCACGTCATGGAGGTATGTCATCTTCTACATTCGTTTGAAGTCGGCCTACCTCTCCCAAGACTTGAAAACTGCCATGACTACTTTGCCACAAGCTCGCCAAAACGATTTCGTTAAAACCGCTAACGAGTTGGTCGATAACATGGCTGAGGTATGTACTTTTCTATTGTTTTATTTTCATAATCCAAAAATATTTTACTAATTAAATTTAGTCCAAAGTCTAATTATTGATTAACTTTTTTTTGTTGAACTTTAATTTGATCATTTGGATTATGATATGTTTCAGTTGGATTATTACGTTCGCACACCCAAGGTGTATGAGTCATATTTGTACTACGAAAAGACATTGAAATCCATTGATGATCTGGTGGCTTTACTTGCTTAGAGATGTAAATAAAATAATTAATATCAAATGTTCTTCATCCCACAAAATTGAATGCATCAAATTTGTAGATTTGTGTTATTGATTTAAGATTTCTGTAGTCTTTTACTTCATTAGTTAATTATATTAATTCATGTGTAAAAAATTATTTTATTCTAGTAATTGTTATGAAAGAAAAAGGGTTATTAATTTCTTTCATTTTAAAAAATAAATACAGAATTTTGAGATCGAATTTTGTAGATTACTCTTAGCTATATTTTTAGTTTGTAACTTTGTCAATAAATATGTAGTGTACGAAGTTGGAT

mRNA sequence

CATAATTTAAAGAAATATTAGTGTGACAAAGTGATAAAATGTAAGGTTGTGAATGAATATAATGAAATGGATAAGAAGGTAAAGGGTAAGGCCAGAAAGTGTGTGTGTGTGTGTATGTTCTCCCAAATGGCGAAATGAATGGTAAGAAGCCAAAAGTACATCCAAAGCCATGCCTACCCTTCTTGCCAACGCCAACAGTACTCTCTTCTCCTCACCCATTTCCACTCCCCACAAATCCCTCCACCGCCGCCACTTCCCCATCATCACCGCCTCCCTTCCCATCCACCGTCGCCATATCGCCACAACCCTTGCAGTGGTGATTGGGTTGCAAGCTGCAACACCCCTCGCGCTAGCCCAAAGTTGGGGTACACACTCGTTCATTAAGGAGCGATACTTCGAGCCCGGTTTGTCGGCCGATGAGGCAGTGGCGAGGATAAAACAGACGGCGGAAGGACTTCATAGCATCCGTGAGATGCTTGAGACCACGTCATGGAGGTATGTCATCTTCTACATTCGTTTGAAGTCGGCCTACCTCTCCCAAGACTTGAAAACTGCCATGACTACTTTGCCACAAGCTCGCCAAAACGATTTCGTTAAAACCGCTAACGAGTTGGTCGATAACATGGCTGAGTTGGATTATTACGTTCGCACACCCAAGGTGTATGAGTCATATTTGTACTACGAAAAGACATTGAAATCCATTGATGATCTGGTGGCTTTACTTGCTTAGAGATGTAAATAAAATAATTAATATCAAATGTTCTTCATCCCACAAAATTGAATGCATCAAATTTGTAGATTTGTGTTATTGATTTAAGATTTCTGTAGTCTTTTACTTCATTAGTTAATTATATTAATTCATGTGTAAAAAATTATTTTATTCTAGTAATTGTTATGAAAGAAAAAGGGTTATTAATTTCTTTCATTTTAAAAAATAAATACAGAATTTTGAGATCGAATTTTGTAGATTACTCTTAGCTATATTTTTAGTTTGTAACTTTGTCAATAAATATGTAGTGTACGAAGTTGGAT

Coding sequence (CDS)

ATGCCTACCCTTCTTGCCAACGCCAACAGTACTCTCTTCTCCTCACCCATTTCCACTCCCCACAAATCCCTCCACCGCCGCCACTTCCCCATCATCACCGCCTCCCTTCCCATCCACCGTCGCCATATCGCCACAACCCTTGCAGTGGTGATTGGGTTGCAAGCTGCAACACCCCTCGCGCTAGCCCAAAGTTGGGGTACACACTCGTTCATTAAGGAGCGATACTTCGAGCCCGGTTTGTCGGCCGATGAGGCAGTGGCGAGGATAAAACAGACGGCGGAAGGACTTCATAGCATCCGTGAGATGCTTGAGACCACGTCATGGAGGTATGTCATCTTCTACATTCGTTTGAAGTCGGCCTACCTCTCCCAAGACTTGAAAACTGCCATGACTACTTTGCCACAAGCTCGCCAAAACGATTTCGTTAAAACCGCTAACGAGTTGGTCGATAACATGGCTGAGTTGGATTATTACGTTCGCACACCCAAGGTGTATGAGTCATATTTGTACTACGAAAAGACATTGAAATCCATTGATGATCTGGTGGCTTTACTTGCTTAG

Protein sequence

MPTLLANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLALAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALLA

Homology

[Close]

BLAST of MELO3C006032.jh1 vs. NCBI nr
Match: XP_008437911.1 (PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucumis melo] >KAA0048899.1 photosynthetic NDH subunit of lumenal location 2 [Cucumis melo var. makuwa] >TYK20849.1 photosynthetic NDH subunit of lumenal location 2 [Cucumis melo var. makuwa])

HSP 1 Score: 364 bits (935), Expect = 6.74e-127
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MPTLLANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLA 60
           MPTLLANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLA
Sbjct: 1   MPTLLANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLA 60

Query: 61  LAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSA 120
           LAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSA
Sbjct: 61  LAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSA 120

Query: 121 YLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD 180
           YLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD
Sbjct: 121 YLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD 180

Query: 181 LVALLA 186
           LVALLA
Sbjct: 181 LVALLA 186

[Close]

BLAST of MELO3C006032.jh1 vs. NCBI nr
Match: XP_004133817.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucumis sativus] >KGN56433.1 hypothetical protein Csa_010782 [Cucumis sativus])

HSP 1 Score: 334 bits (857), Expect = 5.45e-115
Identity = 176/188 (93.62%), Postives = 182/188 (96.81%), Query Frame = 0


Query: 1   MPTLLANAN-STLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPL 60
           MPTL ANAN +TLFSS ISTPHKS HR HFP+ITASLPIHRRHIATTLA+V+GLQAATPL
Sbjct: 1   MPTL-ANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPL 60

Query: 61  -ALAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLK 120
            ALAQSWGTHSFIKERYFEPGLSA+EAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLK
Sbjct: 61  VALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLK 120

Query: 121 SAYLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSI 180
           SAYLSQDLKTAMTTLPQAR+NDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSI
Sbjct: 121 SAYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSI 180

Query: 181 DDLVALLA 186
           DDLVALLA
Sbjct: 181 DDLVALLA 187

[Close]

BLAST of MELO3C006032.jh1 vs. NCBI nr
Match: XP_038880767.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 317 bits (813), Expect = 2.67e-108
Identity = 168/186 (90.32%), Postives = 170/186 (91.40%), Query Frame = 0


Query: 3   TLLANANSTLFSSPISTPHKSLHRR--HFPIITASLPIHRRHIATTLAVVIGLQAATPLA 62
           T  ANAN TLF S ISTPHK  HRR  HFPIITASL IHRRHIAT LA VIGLQA  PLA
Sbjct: 2   TSFANAN-TLFISRISTPHKCSHRRRHHFPIITASLSIHRRHIATALAAVIGLQATAPLA 61

Query: 63  LAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSA 122
           LAQSWGTHSFIKERYFEPGLSA+EAVARIKQTAEGLHSIREMLET SWRYVIFYIRLKSA
Sbjct: 62  LAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETMSWRYVIFYIRLKSA 121

Query: 123 YLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD 182
           YLSQDLKTAM+ LPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD
Sbjct: 122 YLSQDLKTAMSVLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD 181

Query: 183 LVALLA 186
           LVALLA
Sbjct: 182 LVALLA 186

[Close]

BLAST of MELO3C006032.jh1 vs. NCBI nr
Match: XP_022946003.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 297 bits (760), Expect = 2.87e-100
Identity = 153/181 (84.53%), Postives = 167/181 (92.27%), Query Frame = 0


Query: 6   ANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLALAQSW 65
           ANA +TLFSS I TPH+  HR  FPII+ASL IHRRHIAT LA+V+GLQAA P ALAQ+W
Sbjct: 5   ANA-TTLFSSRIPTPHRC-HRHPFPIISASLSIHRRHIATALALVVGLQAAAPPALAQTW 64

Query: 66  GTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQD 125
           GTHSFIKERYFEPGLS +EAVARI+QTAEGLHSIR+MLET SWRYVIFYIRLKSAYLSQD
Sbjct: 65  GTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQD 124

Query: 126 LKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 185
           LKTAM+ LPQARQN++VKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKS+DDLVA+L
Sbjct: 125 LKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDLVAIL 183

[Close]

BLAST of MELO3C006032.jh1 vs. NCBI nr
Match: XP_022972860.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 294 bits (752), Expect = 4.76e-99
Identity = 151/181 (83.43%), Postives = 166/181 (91.71%), Query Frame = 0


Query: 6   ANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLALAQSW 65
           ANA +TLFSS I TPH+  HR  FPII+ASL I RRHIAT LA+V+GLQAA P ALAQ+W
Sbjct: 5   ANA-TTLFSSRIPTPHRC-HRHPFPIISASLSIQRRHIATALALVVGLQAAAPPALAQTW 64

Query: 66  GTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQD 125
           GTHSFIKERYF+PGLS +EAVARI+QTAEGLHSIR+MLET SWRYVIFYIRLKSAYLSQD
Sbjct: 65  GTHSFIKERYFQPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQD 124

Query: 126 LKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 185
           LKTAM+ LPQARQND+VKTANELVDNMAELDYY+RTPKVYESYLYYEKTLKS+DDLVA+L
Sbjct: 125 LKTAMSVLPQARQNDYVKTANELVDNMAELDYYIRTPKVYESYLYYEKTLKSMDDLVAIL 183

[Close]

BLAST of MELO3C006032.jh1 vs. ExPASy Swiss-Prot
Match: Q9XI73 (Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL2 PE=1 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.6e-49
Identity = 101/148 (68.24%), Postives = 118/148 (79.73%), Query Frame = 0


Query: 40  RRHIATTLAVVIGLQAATPLALAQ-SWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHS 99
           RR   T+L     +  AT  ALAQ  WGT SFIKE+YF PGLS ++A ARIKQTAEGL  
Sbjct: 43  RRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRD 102

Query: 100 IREMLETTSWRYVIFYIRLKSAYLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYY 159
           +REML+  SWRYVIFYIRLK AYLSQDL  AM  LP++R+ND+V+ ANELV+NM+ELD+Y
Sbjct: 103 MREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDFY 162

Query: 160 VRTPKVYESYLYYEKTLKSIDDLVALLA 187
           VRTPKVYESYLYYEKTLKSID++V  LA
Sbjct: 163 VRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]

BLAST of MELO3C006032.jh1 vs. ExPASy Swiss-Prot
Match: Q41806 (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays OX=4577 GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-09
Identity = 32/115 (27.83%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 71  IKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 130
           +KER++   L   EAVAR+K +A+ + +++ +++  +W YV   +RL+++YL  DLKT +
Sbjct: 98  LKERFYLQPLPPAEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVI 157

Query: 131 TTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 186
            + P+  +    +   +L   + +LD+  +     E+  Y+  T  ++ D++A L
Sbjct: 158 ASKPKEEKKSLKELTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLAKL 212

[Close]

BLAST of MELO3C006032.jh1 vs. ExPASy Swiss-Prot
Match: Q41932 (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 1.7e-09
Identity = 32/115 (27.83%), Postives = 65/115 (56.52%), Query Frame = 0


Query: 71  IKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 130
           +K+R++   LS  EA AR K +A+ + +++  ++  +W YV   +RL+++YL  DL T +
Sbjct: 115 LKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVI 174

Query: 131 TTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 186
           +  P+  +        +L   +  LDY  R+    ++  YY +T+ S+++++A L
Sbjct: 175 SAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229

[Close]

BLAST of MELO3C006032.jh1 vs. ExPASy Swiss-Prot
Match: Q41048 (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays OX=4577 GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.7e-09
Identity = 31/115 (26.96%), Postives = 65/115 (56.52%), Query Frame = 0


Query: 71  IKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 130
           +KER++   L   EA AR+K +A+ + +++ +++  +W YV   +RL+++YL  DLKT +
Sbjct: 102 LKERFYLQPLPPAEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVI 161

Query: 131 TTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 186
            + P+  +    +   +L   + +LD+  +     E+  Y+  T  ++ D++A L
Sbjct: 162 ASKPKEEKKSLKELTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKL 216

[Close]

BLAST of MELO3C006032.jh1 vs. ExPASy Swiss-Prot
Match: Q9XFT3 (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 62.8 bits (151), Expect = 4.8e-09
Identity = 30/115 (26.09%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 71  IKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 130
           +K+R++   L   EA AR K++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 131 TTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 186
           ++ P+  +        +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of MELO3C006032.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DC39 (Photosynthetic NDH subunit of lumenal location 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G001130 PE=3 SV=1)

HSP 1 Score: 364 bits (935), Expect = 3.26e-127
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MPTLLANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLA 60
           MPTLLANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLA
Sbjct: 1   MPTLLANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLA 60

Query: 61  LAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSA 120
           LAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSA
Sbjct: 61  LAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSA 120

Query: 121 YLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD 180
           YLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD
Sbjct: 121 YLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD 180

Query: 181 LVALLA 186
           LVALLA
Sbjct: 181 LVALLA 186

[Close]

BLAST of MELO3C006032.jh1 vs. ExPASy TrEMBL
Match: A0A1S3AVQ2 (photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483197 PE=3 SV=1)

HSP 1 Score: 364 bits (935), Expect = 3.26e-127
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MPTLLANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLA 60
           MPTLLANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLA
Sbjct: 1   MPTLLANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLA 60

Query: 61  LAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSA 120
           LAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSA
Sbjct: 61  LAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSA 120

Query: 121 YLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD 180
           YLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD
Sbjct: 121 YLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD 180

Query: 181 LVALLA 186
           LVALLA
Sbjct: 181 LVALLA 186

[Close]

BLAST of MELO3C006032.jh1 vs. ExPASy TrEMBL
Match: A0A0A0L3W3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119660 PE=3 SV=1)

HSP 1 Score: 334 bits (857), Expect = 2.64e-115
Identity = 176/188 (93.62%), Postives = 182/188 (96.81%), Query Frame = 0


Query: 1   MPTLLANAN-STLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPL 60
           MPTL ANAN +TLFSS ISTPHKS HR HFP+ITASLPIHRRHIATTLA+V+GLQAATPL
Sbjct: 1   MPTL-ANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPL 60

Query: 61  -ALAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLK 120
            ALAQSWGTHSFIKERYFEPGLSA+EAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLK
Sbjct: 61  VALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLK 120

Query: 121 SAYLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSI 180
           SAYLSQDLKTAMTTLPQAR+NDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSI
Sbjct: 121 SAYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSI 180

Query: 181 DDLVALLA 186
           DDLVALLA
Sbjct: 181 DDLVALLA 187

[Close]

BLAST of MELO3C006032.jh1 vs. ExPASy TrEMBL
Match: A0A6J1G2K7 (photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111450221 PE=3 SV=1)

HSP 1 Score: 297 bits (760), Expect = 1.39e-100
Identity = 153/181 (84.53%), Postives = 167/181 (92.27%), Query Frame = 0


Query: 6   ANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLALAQSW 65
           ANA +TLFSS I TPH+  HR  FPII+ASL IHRRHIAT LA+V+GLQAA P ALAQ+W
Sbjct: 5   ANA-TTLFSSRIPTPHRC-HRHPFPIISASLSIHRRHIATALALVVGLQAAAPPALAQTW 64

Query: 66  GTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQD 125
           GTHSFIKERYFEPGLS +EAVARI+QTAEGLHSIR+MLET SWRYVIFYIRLKSAYLSQD
Sbjct: 65  GTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQD 124

Query: 126 LKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 185
           LKTAM+ LPQARQN++VKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKS+DDLVA+L
Sbjct: 125 LKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDLVAIL 183

[Close]

BLAST of MELO3C006032.jh1 vs. ExPASy TrEMBL
Match: A0A6J1I9U1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111471370 PE=3 SV=1)

HSP 1 Score: 294 bits (752), Expect = 2.30e-99
Identity = 151/181 (83.43%), Postives = 166/181 (91.71%), Query Frame = 0


Query: 6   ANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLALAQSW 65
           ANA +TLFSS I TPH+  HR  FPII+ASL I RRHIAT LA+V+GLQAA P ALAQ+W
Sbjct: 5   ANA-TTLFSSRIPTPHRC-HRHPFPIISASLSIQRRHIATALALVVGLQAAAPPALAQTW 64

Query: 66  GTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQD 125
           GTHSFIKERYF+PGLS +EAVARI+QTAEGLHSIR+MLET SWRYVIFYIRLKSAYLSQD
Sbjct: 65  GTHSFIKERYFQPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQD 124

Query: 126 LKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 185
           LKTAM+ LPQARQND+VKTANELVDNMAELDYY+RTPKVYESYLYYEKTLKS+DDLVA+L
Sbjct: 125 LKTAMSVLPQARQNDYVKTANELVDNMAELDYYIRTPKVYESYLYYEKTLKSMDDLVAIL 183

[Close]

BLAST of MELO3C006032.jh1 vs. TAIR 10
Match: AT1G14150.1 (PsbQ-like 2 )

HSP 1 Score: 197.2 bits (500), Expect = 1.2e-50
Identity = 101/148 (68.24%), Postives = 118/148 (79.73%), Query Frame = 0


Query: 40  RRHIATTLAVVIGLQAATPLALAQ-SWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHS 99
           RR   T+L     +  AT  ALAQ  WGT SFIKE+YF PGLS ++A ARIKQTAEGL  
Sbjct: 43  RRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRD 102

Query: 100 IREMLETTSWRYVIFYIRLKSAYLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYY 159
           +REML+  SWRYVIFYIRLK AYLSQDL  AM  LP++R+ND+V+ ANELV+NM+ELD+Y
Sbjct: 103 MREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDFY 162

Query: 160 VRTPKVYESYLYYEKTLKSIDDLVALLA 187
           VRTPKVYESYLYYEKTLKSID++V  LA
Sbjct: 163 VRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]

BLAST of MELO3C006032.jh1 vs. TAIR 10
Match: AT1G14150.2 (PsbQ-like 2 )

HSP 1 Score: 144.4 bits (363), Expect = 8.9e-35
Identity = 74/117 (63.25%), Postives = 89/117 (76.07%), Query Frame = 0


Query: 40  RRHIATTLAVVIGLQAATPLALAQ-SWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHS 99
           RR   T+L     +  AT  ALAQ  WGT SFIKE+YF PGLS ++A ARIKQTAEGL  
Sbjct: 43  RRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRD 102

Query: 100 IREMLETTSWRYVIFYIRLKSAYLSQDLKTAMTTLPQARQNDFVKTANELVDNMAEL 156
           +REML+  SWRYVIFYIRLK AYLSQDL  AM  LP++R+ND+V+ ANELV+NM+E+
Sbjct: 103 MREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSEV 159

[Close]

BLAST of MELO3C006032.jh1 vs. TAIR 10
Match: AT4G05180.1 (photosystem II subunit Q-2 )

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-10
Identity = 32/115 (27.83%), Postives = 65/115 (56.52%), Query Frame = 0


Query: 71  IKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 130
           +K+R++   LS  EA AR K +A+ + +++  ++  +W YV   +RL+++YL  DL T +
Sbjct: 115 LKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVI 174

Query: 131 TTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 186
           +  P+  +        +L   +  LDY  R+    ++  YY +T+ S+++++A L
Sbjct: 175 SAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229

[Close]

BLAST of MELO3C006032.jh1 vs. TAIR 10
Match: AT4G21280.1 (photosystem II subunit QA )

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-10
Identity = 30/115 (26.09%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 71  IKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 130
           +K+R++   L   EA AR K++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 108 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 167

Query: 131 TTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 186
           ++ P+  +        +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 168 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 222

[Close]

BLAST of MELO3C006032.jh1 vs. TAIR 10
Match: AT4G21280.2 (photosystem II subunit QA )

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-10
Identity = 30/115 (26.09%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 71  IKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 130
           +K+R++   L   EA AR K++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 131 TTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 186
           ++ P+  +        +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

The following BLAST results are available for this feature:

BLAST of MELO3C006032.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437911.1	6.74e-127	100.00	PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucu...	[more]
XP_004133817.1	5.45e-115	93.62	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucumis sativus...	[more]
XP_038880767.1	2.67e-108	90.32	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Benincasa hispi...	[more]
XP_022946003.1	2.87e-100	84.53	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita mosch...	[more]
XP_022972860.1	4.76e-99	83.43	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita maxim...	[more]

BLAST of MELO3C006032.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XI73	1.6e-49	68.24	Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis t...	[more]
Q41806	1.3e-09	27.83	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays OX=4577 GN=PSBQ2...	[more]
Q41932	1.7e-09	27.83	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
Q41048	3.7e-09	26.96	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays OX=4577 GN=PSBQ1...	[more]
Q9XFT3	4.8e-09	26.09	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]

BLAST of MELO3C006032.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DC39	3.26e-127	100.00	Photosynthetic NDH subunit of lumenal location 2 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3AVQ2	3.26e-127	100.00	photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucumis melo ...	[more]
A0A0A0L3W3	2.64e-115	93.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119660 PE=3 SV=1	[more]
A0A6J1G2K7	1.39e-100	84.53	photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita mos...	[more]
A0A6J1I9U1	2.30e-99	83.43	photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita max...	[more]

BLAST of MELO3C006032.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14150.1	1.2e-50	68.24	PsbQ-like 2	[more]
AT1G14150.2	8.9e-35	63.25	PsbQ-like 2	[more]
AT4G05180.1	1.2e-10	27.83	photosystem II subunit Q-2	[more]
AT4G21280.1	3.4e-10	26.09	photosystem II subunit QA	[more]
AT4G21280.2	3.4e-10	26.09	photosystem II subunit QA	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023222	PsbQ-like domain superfamily	GENE3D	1.20.120.290		coord: 43..185 e-value: 2.9E-39 score: 136.5
IPR023222	PsbQ-like domain superfamily	SUPERFAMILY	101112	Oxygen-evolving enhancer protein 3,	coord: 75..186
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 62..186 e-value: 4.5E-33 score: 114.7
IPR008797	Oxygen-evolving enhancer protein 3	PANTHER	PTHR33399	OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC	coord: 31..186
None	No IPR available	PANTHER	PTHR33399:SF5	PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 2, CHLOROPLASTIC	coord: 31..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006032.jh1.t1	MELO3C006032.jh1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009654	photosystem II oxygen evolving complex
molecular_function	GO:0005509	calcium ion binding