MELO3C005959 (gene) Melon (DHL92) v4

Overview


Name	MELO3C005959
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Protein transport protein Sec61 subunit beta
Location	chr06: 238254 .. 239984 (+)
RNA-Seq Expression	MELO3C005959
Synteny	MELO3C005959

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATAGAAGAAAAGAAAAGAAAAGTTAGAATTAGCATTCCCTTCTGAATTCCAATTCCATCTCCCCATTCCAAACAAACAACTCTTCTTCGATTTTGTCTCAGGCAAGTCCTCTCCTATCTCTCTTCTACTTCCATGAATCCATCATGAACCAACCTGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATTTTTTTTTTCATACGATTTGGTAAATTAGGGTTTCCTAACCATTCTAATTTTTTCATACGATTTGGTCGTTGTCGTGGTCGTCAGATCTGGATTCATTCTATTTTATTTTTTGCTAATTATCAGTTCGAGTAAATTATATTATTTGCGCCTCTTGAGAATGTTCGTTTATACATATGCTTTGTTTTCCATCTCGATTTTCTTTTGCGAAACAGATCTCCCTCTTTACTCAAAACTAATTACCCTCCCCCTTTCCTCCTTGTTTTTGTTCAGTTTGGCGCTAATCTGTGGTGGCTGTTATAAAAAATTAGGGCTCCAAATTGTTTCTTCTGTTGTTAATTTATCGGTCGATTATATGTTTTAATTTACAAACTCTAACTTTTAGGGAGTGTTTGAGGCCTCGCGCATTTTCTGGTTCGAGGCCTTGGGGAAGTCTAGGATCTAATAGTTTTTTTTCTTCAAGAACAAAATCGTTAATTTAGCTTCTGATTCCATGCATAGTTTGGTACCTTGCGTTCTAATTTTCTTTGAAACTATTGATCTGAATCAGTTCCGAGTCTGTCAACATTTAATCTCAATTCATGCAGTATGGCCTACCAATTGGTTTAATTACGCAGTACCTAGTTTTAGGGGTTCAAAGTTCATTCTTTCGTATGTCGAGAGAATCCATATTCATGTTAACGAACATTTGCACGGATTTTTGGAGTTCTAGGTAGATCAAAGTTCATTGTTTCGTGTGATGGAGATTGTCTTGTTAGATAATGAAGTTTTGATAACCTGATTTGAGAAAGGTCAGGGAAGGAATGGAAGGTTTGGAGGTTAACATTCCTTCCTACCTACATGTTCATATTTGATTCAGAAGTGCTCAACAAGGGATGTCTCCCGTTCCCGATATCAATTGTCAGCTTGAAAGTTTCTAAATTTTCATTCTCTTTGTCGATACAGAATGGCTTTAGGTGGAGGTCCCCAGAGAGGAAGTGCGGCAGCTACTGCCAGCATGCGCAGGAGAAGAACAACAAGTTCTGGTACATCTGGAGGTGCAGCTGGAACAATGCTGCAGTTTTACACGGATGATGCTCCTGGACTCAAGATATCCCCCAATGTTGTTCTCGTCATGAGCATTGGTTTCATTGCTTTTGTTGCCGTTCTCCATGTTATGGGTAAGCTGTACTTCGTGCGAAGAGAAGCCTAGAGGGTTTTCCCCTGATAAAAGTGTGATGCATATTTAAATTCATTGTGGCAAAAGTTTAATTTTGAACTGAACTCTCGTTTGTCATTACAGTCAAAACTAATTTCGATTTTGTTACTAGTTAGAATGAAAGAGCTTTTCTGTTCTCTAAATTTTGCTTTTTCCGTTTGTTGATTATTCTTATGCTGCACATTAAAGCCCTACTGCAATTTATAACAATGACAACCGCCGGAGTGTAGAATCAGATTTGTTGTGGAAATGACAGTCAATTTCCATATTCTGCCTGTGTTATAATTGATATATTTAAGCAATAAGTTCTTAATAGTTTTTCTTTCTTC

mRNA sequence

AAATAGAAGAAAAGAAAAGAAAAGTTAGAATTAGCATTCCCTTCTGAATTCCAATTCCATCTCCCCATTCCAAACAAACAACTCTTCTTCGATTTTGTCTCAGAATGGCTTTAGGTGGAGGTCCCCAGAGAGGAAGTGCGGCAGCTACTGCCAGCATGCGCAGGAGAAGAACAACAAGTTCTGGTACATCTGGAGGTGCAGCTGGAACAATGCTGCAGTTTTACACGGATGATGCTCCTGGACTCAAGATATCCCCCAATGTTGTTCTCGTCATGAGCATTGGTTTCATTGCTTTTGTTGCCGTTCTCCATGTTATGGCCCTACTGCAATTTATAACAATGACAACCGCCGGAGTGTAGAATCAGATTTGTTGTGGAAATGACAGTCAATTTCCATATTCTGCCTGTGTTATAATTGATATATTTAAGCAATAAGTTCTTAATAGTTTTTCTTTCTTC

Coding sequence (CDS)

ATGGCTTTAGGTGGAGGTCCCCAGAGAGGAAGTGCGGCAGCTACTGCCAGCATGCGCAGGAGAAGAACAACAAGTTCTGGTACATCTGGAGGTGCAGCTGGAACAATGCTGCAGTTTTACACGGATGATGCTCCTGGACTCAAGATATCCCCCAATGTTGTTCTCGTCATGAGCATTGGTTTCATTGCTTTTGTTGCCGTTCTCCATGTTATGGCCCTACTGCAATTTATAACAATGACAACCGCCGGAGTGTAG

Protein sequence

MALGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAVLHVMALLQFITMTTAGV

Homology

[Close]

BLAST of MELO3C005959 vs. NCBI nr
Match: XP_008437786.1 (PREDICTED: protein transport protein Sec61 subunit beta [Cucumis melo] >KAA0048829.1 protein transport protein Sec61 subunit beta [Cucumis melo var. makuwa] >TYK20781.1 protein transport protein Sec61 subunit beta [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 2.9e-27
Identity = 73/77 (94.81%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MALGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIG 60
          MALGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIG
Sbjct: 1  MALGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIG 60

Query: 61 FIAFVAVLHVMALLQFI 78
          FIAFVAVLHVM  L F+
Sbjct: 61 FIAFVAVLHVMGKLYFV 77

[Close]

BLAST of MELO3C005959 vs. NCBI nr
Match: XP_011650635.1 (protein transport protein Sec61 subunit beta [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 7.2e-26
Identity = 73/78 (93.59%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 1  MAL-GGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
          MAL GGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1  MALGGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 61 GFIAFVAVLHVMALLQFI 78
          GFIAFVAVLHVM  L F+
Sbjct: 61 GFIAFVAVLHVMGKLYFV 78

[Close]

BLAST of MELO3C005959 vs. NCBI nr
Match: XP_022950482.1 (protein transport protein Sec61 subunit beta-like [Cucurbita moschata] >XP_022974254.1 protein transport protein Sec61 subunit beta-like [Cucurbita maxima] >XP_022975750.1 protein transport protein Sec61 subunit beta-like [Cucurbita maxima] >XP_023541021.1 protein transport protein Sec61 subunit beta-like [Cucurbita pepo subsp. pepo] >KAG6597025.1 Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028503.1 Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 126.7 bits (317), Expect = 9.3e-26
Identity = 72/78 (92.31%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 1  MALGGG-PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
          MALGGG PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 61 GFIAFVAVLHVMALLQFI 78
          GFIAFVA+LHVM  L F+
Sbjct: 61 GFIAFVAILHVMGKLYFV 78

[Close]

BLAST of MELO3C005959 vs. NCBI nr
Match: KAE8650213.1 (hypothetical protein Csa_009973 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 4.6e-25
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = 0


Query: 1  MAL-GGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
          MAL GGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1  MALGGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 61 GFIAFVAVLHVMALLQ 76
          GFIAFVAVLHVM  ++
Sbjct: 61 GFIAFVAVLHVMVRMK 76

[Close]

BLAST of MELO3C005959 vs. NCBI nr
Match: XP_038875187.1 (protein transport protein Sec61 subunit beta-like isoform X1 [Benincasa hispida])

HSP 1 Score: 124.4 bits (311), Expect = 4.6e-25
Identity = 71/78 (91.03%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 1  MALGG-GPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
          MALGG  PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 19 MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 78

Query: 61 GFIAFVAVLHVMALLQFI 78
          GFIAFVA+LHVM  L F+
Sbjct: 79 GFIAFVAILHVMGKLYFV 96

[Close]

BLAST of MELO3C005959 vs. ExPASy Swiss-Prot
Match: P38389 (Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana OX=3702 GN=At2g45070 PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 5.9e-23
Identity = 63/81 (77.78%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 1  MALGGGPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLV 60
          M   G PQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+
Sbjct: 1  MVGSGAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLI 60

Query: 61 MSIGFIAFVAVLHVMALLQFI 78
          MSIGFIAFVAVLHVM  L F+
Sbjct: 61 MSIGFIAFVAVLHVMGKLYFV 81

[Close]

BLAST of MELO3C005959 vs. ExPASy Swiss-Prot
Match: Q9HFC7 (Protein transport protein Sec61 subunit beta OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=SBH1 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.8e-06
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 14 ATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAVLHVMA 73
          A AS R   T S G +GG++ TML+ YTD++ GLK+ P VV+V+S+GFI  V  LH++A
Sbjct: 26 AKASQRPTSTRSVG-AGGSSSTMLKLYTDESQGLKVDPVVVMVLSLGFIFSVVALHILA 83

[Close]

BLAST of MELO3C005959 vs. ExPASy Swiss-Prot
Match: A8I6P9 (Protein transport protein Sec61 subunit beta OS=Chlamydomonas reinhardtii OX=3055 GN=SEC61B PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 8.5e-06
Identity = 33/74 (44.59%), Postives = 41/74 (55.41%), Query Frame = 0


Query: 4  GGGPQRGSAAATASMRRRRTTSSGTSG--GAAGTMLQFYTDDAPGLKISPNVVLVMSIGF 63
          G         A  ++RRR    SG SG   A    + FYTDD PG K+SP VV+ MS+ F
Sbjct: 16 GRSSSNAPTGAAGALRRRPVRGSGGSGTTKAQQAAMNFYTDDTPGWKMSPVVVITMSLSF 75

Query: 64 IAFVAVLHVMALLQ 76
          IAFV +LHV+   Q
Sbjct: 76 IAFVTILHVVGKFQ 89

[Close]

BLAST of MELO3C005959 vs. ExPASy Swiss-Prot
Match: O43002 (Protein transport protein sec61 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sbh1 PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.6e-04
Identity = 29/75 (38.67%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 5  GGPQRGSAAATASMRRRRTTSSGTSG-------GAAGTMLQFYTDDAPGLKISPNVVLVM 64
          GGP+       A  +  + ++SG +G       G+  T+L+ YTD+A G K+ P VV+V+
Sbjct: 19 GGPKSQIRRRAAVEKNTKESNSGPAGARAAGAPGSTPTLLKLYTDEASGFKVDPVVVMVL 78

Query: 65 SIGFIAFVAVLHVMA 73
          S+GFIA V +LH++A
Sbjct: 79 SVGFIASVFLLHIVA 93

[Close]

BLAST of MELO3C005959 vs. ExPASy Swiss-Prot
Match: P60467 (Protein transport protein Sec61 subunit beta OS=Canis lupus familiaris OX=9615 GN=SEC61B PE=1 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 2.7e-04
Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 4  GGGPQRGSA--AATASMRRRRTTSSG------TSGGAAGTMLQFYTDDAPGLKISPNVVL 63
          G  P +  A  AA +++R+R+  S G      T+    G M +FYT+D+PGLK+ P  VL
Sbjct: 15 GRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVL 74

Query: 64 VMSIGFIAFVAVLHV 71
          VMS+ FIA V +LH+
Sbjct: 75 VMSLLFIASVFMLHI 89

[Close]

BLAST of MELO3C005959 vs. ExPASy TrEMBL
Match: A0A5D3DB05 (Protein transport protein Sec61 subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00420 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.4e-27
Identity = 73/77 (94.81%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MALGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIG 60
          MALGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIG
Sbjct: 1  MALGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIG 60

Query: 61 FIAFVAVLHVMALLQFI 78
          FIAFVAVLHVM  L F+
Sbjct: 61 FIAFVAVLHVMGKLYFV 77

[Close]

BLAST of MELO3C005959 vs. ExPASy TrEMBL
Match: A0A1S3AUY8 (Protein transport protein Sec61 subunit beta OS=Cucumis melo OX=3656 GN=LOC103483120 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.4e-27
Identity = 73/77 (94.81%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MALGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIG 60
          MALGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIG
Sbjct: 1  MALGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIG 60

Query: 61 FIAFVAVLHVMALLQFI 78
          FIAFVAVLHVM  L F+
Sbjct: 61 FIAFVAVLHVMGKLYFV 77

[Close]

BLAST of MELO3C005959 vs. ExPASy TrEMBL
Match: A0A0A0L6Y8 (Protein transport protein Sec61 subunit beta OS=Cucumis sativus OX=3659 GN=Csa_3G117430 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.5e-26
Identity = 73/78 (93.59%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 1  MAL-GGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
          MAL GGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1  MALGGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 61 GFIAFVAVLHVMALLQFI 78
          GFIAFVAVLHVM  L F+
Sbjct: 61 GFIAFVAVLHVMGKLYFV 78

[Close]

BLAST of MELO3C005959 vs. ExPASy TrEMBL
Match: A0A6J1IH25 (Protein transport protein Sec61 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111472887 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.5e-26
Identity = 72/78 (92.31%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 1  MALGGG-PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
          MALGGG PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 61 GFIAFVAVLHVMALLQFI 78
          GFIAFVA+LHVM  L F+
Sbjct: 61 GFIAFVAILHVMGKLYFV 78

[Close]

BLAST of MELO3C005959 vs. ExPASy TrEMBL
Match: A0A6J1GEY3 (Protein transport protein Sec61 subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111453574 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.5e-26
Identity = 72/78 (92.31%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 1  MALGGG-PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
          MALGGG PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 61 GFIAFVAVLHVMALLQFI 78
          GFIAFVA+LHVM  L F+
Sbjct: 61 GFIAFVAILHVMGKLYFV 78

[Close]

BLAST of MELO3C005959 vs. TAIR 10
Match: AT2G45070.1 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 107.8 bits (268), Expect = 4.2e-24
Identity = 63/81 (77.78%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 1  MALGGGPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLV 60
          M   G PQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+
Sbjct: 1  MVGSGAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLI 60

Query: 61 MSIGFIAFVAVLHVMALLQFI 78
          MSIGFIAFVAVLHVM  L F+
Sbjct: 61 MSIGFIAFVAVLHVMGKLYFV 81

[Close]

BLAST of MELO3C005959 vs. TAIR 10
Match: AT2G45070.2 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 107.8 bits (268), Expect = 4.2e-24
Identity = 63/81 (77.78%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 1  MALGGGPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLV 60
          M   G PQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+
Sbjct: 1  MVGSGAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLI 60

Query: 61 MSIGFIAFVAVLHVMALLQFI 78
          MSIGFIAFVAVLHVM  L F+
Sbjct: 61 MSIGFIAFVAVLHVMGKLYFV 81

[Close]

BLAST of MELO3C005959 vs. TAIR 10
Match: AT2G45070.3 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 107.8 bits (268), Expect = 4.2e-24
Identity = 63/81 (77.78%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 1  MALGGGPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLV 60
          M   G PQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+
Sbjct: 1  MVGSGAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLI 60

Query: 61 MSIGFIAFVAVLHVMALLQFI 78
          MSIGFIAFVAVLHVM  L F+
Sbjct: 61 MSIGFIAFVAVLHVMGKLYFV 81

[Close]

BLAST of MELO3C005959 vs. TAIR 10
Match: AT2G45070.4 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 107.8 bits (268), Expect = 4.2e-24
Identity = 63/81 (77.78%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 1  MALGGGPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLV 60
          M   G PQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+
Sbjct: 1  MVGSGAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLI 60

Query: 61 MSIGFIAFVAVLHVMALLQFI 78
          MSIGFIAFVAVLHVM  L F+
Sbjct: 61 MSIGFIAFVAVLHVMGKLYFV 81

[Close]

BLAST of MELO3C005959 vs. TAIR 10
Match: AT3G60540.1 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-23
Identity = 61/78 (78.21%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1  MALGGGPQRGSAAATASMRRRRTT-SSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
          M  GG PQRGSAAATASMRRR+    S ++GG AGTMLQFYTDDAPGLKISPNVVL+MSI
Sbjct: 1  MVGGGAPQRGSAAATASMRRRKPAGGSSSAGGGAGTMLQFYTDDAPGLKISPNVVLIMSI 60

Query: 61 GFIAFVAVLHVMALLQFI 78
          GFIAFVAVLHVM  L F+
Sbjct: 61 GFIAFVAVLHVMGKLYFV 78

The following BLAST results are available for this feature:

BLAST of MELO3C005959 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437786.1	2.9e-27	94.81	PREDICTED: protein transport protein Sec61 subunit beta [Cucumis melo] >KAA00488...	[more]
XP_011650635.1	7.2e-26	93.59	protein transport protein Sec61 subunit beta [Cucumis sativus]	[more]
XP_022950482.1	9.3e-26	92.31	protein transport protein Sec61 subunit beta-like [Cucurbita moschata] >XP_02297...	[more]
KAE8650213.1	4.6e-25	93.42	hypothetical protein Csa_009973 [Cucumis sativus]	[more]
XP_038875187.1	4.6e-25	91.03	protein transport protein Sec61 subunit beta-like isoform X1 [Benincasa hispida]	[more]

BLAST of MELO3C005959 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P38389	5.9e-23	77.78	Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9HFC7	3.8e-06	50.85	Protein transport protein Sec61 subunit beta OS=Yarrowia lipolytica (strain CLIB...	[more]
A8I6P9	8.5e-06	44.59	Protein transport protein Sec61 subunit beta OS=Chlamydomonas reinhardtii OX=305...	[more]
O43002	1.6e-04	38.67	Protein transport protein sec61 subunit beta OS=Schizosaccharomyces pombe (strai...	[more]
P60467	2.7e-04	42.67	Protein transport protein Sec61 subunit beta OS=Canis lupus familiaris OX=9615 G...	[more]

BLAST of MELO3C005959 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DB05	1.4e-27	94.81	Protein transport protein Sec61 subunit beta OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3AUY8	1.4e-27	94.81	Protein transport protein Sec61 subunit beta OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A0A0L6Y8	3.5e-26	93.59	Protein transport protein Sec61 subunit beta OS=Cucumis sativus OX=3659 GN=Csa_3...	[more]
A0A6J1IH25	4.5e-26	92.31	Protein transport protein Sec61 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1GEY3	4.5e-26	92.31	Protein transport protein Sec61 subunit beta OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of MELO3C005959 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45070.1	4.2e-24	77.78	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.2	4.2e-24	77.78	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.3	4.2e-24	77.78	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.4	4.2e-24	77.78	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT3G60540.1	1.2e-23	78.21	Preprotein translocase Sec, Sec61-beta subunit protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR030671	Protein transport Sec61-beta/Sbh	PIRSF	PIRSF006398	Sec61_beta	coord: 2..80 e-value: 2.4E-25 score: 86.8
IPR030671	Protein transport Sec61-beta/Sbh	PANTHER	PTHR13509	SEC61 SUBUNIT BETA	coord: 4..78
IPR016482	Protein transport protein SecG/Sec61-beta/Sbh	PFAM	PF03911	Sec61_beta	coord: 33..72 e-value: 2.2E-18 score: 66.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	PANTHER	PTHR13509:SF2	PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT BETA	coord: 4..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C005959.1	MELO3C005959.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0005784	Sec61 translocon complex