MELO3C005730.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C005730.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Unknown protein
Location	chr09: 23390186 .. 23390383 (+)
RNA-Seq Expression	MELO3C005730.jh1
Synteny	MELO3C005730.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAGTCCAGGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAACCACCACTCAGTGTGGAGCGCCAAACACTCTCAACTGCACTTTATCTTTCTATCCGTTCCCATTGGGCCAAGCGGCTCCACACACCATTTTATATGTTGGTGTGTCCGTGTCCGCAACTCGGCCCGTTGGGGCAACGAGTTGA

mRNA sequence

ATGCGAGTCCAGGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAACCACCACTCAGTGTGGAGCGCCAAACACTCTCAACTGCACTTTATCTTTCTATCCGTTCCCATTGGGCCAAGCGGCTCCACACACCATTTTATATGTTGGTGTGTCCGTGTCCGCAACTCGGCCCGTTGGGGCAACGAGTTGA

Coding sequence (CDS)

ATGCGAGTCCAGGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAACCACCACTCAGTGTGGAGCGCCAAACACTCTCAACTGCACTTTATCTTTCTATCCGTTCCCATTGGGCCAAGCGGCTCCACACACCATTTTATATGTTGGTGTGTCCGTGTCCGCAACTCGGCCCGTTGGGGCAACGAGTTGA

Protein sequence

MRVQDEEEEEEEEEEEEATTTQCGAPNTLNCTLSFYPFPLGQAAPHTILYVGVSVSATRPVGATS

Homology

[Close]

BLAST of MELO3C005730.jh1 vs. NCBI nr
Match: KGN50041.1 (hypothetical protein Csa_000127 [Cucumis sativus])

HSP 1 Score: 105 bits (263), Expect = 2.83e-28
Identity = 57/65 (87.69%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 1  MRVQDEEEEEEEEEEEEATTTQCGAPNTLNCTLSFYPFPLGQAAPHTILYVGVSVSATRP 60
          MRVQDEEEEE     E ATTTQCGAPNTLN TLSFYPFPLGQ APHTILYVGVSVSATRP
Sbjct: 1  MRVQDEEEEE-----EGATTTQCGAPNTLNYTLSFYPFPLGQVAPHTILYVGVSVSATRP 60

Query: 61 VGATS 65
          VGATS
Sbjct: 61 VGATS 60

[Close]

BLAST of MELO3C005730.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KQT1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151570 PE=4 SV=1)

HSP 1 Score: 105 bits (263), Expect = 1.37e-28
Identity = 57/65 (87.69%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 1  MRVQDEEEEEEEEEEEEATTTQCGAPNTLNCTLSFYPFPLGQAAPHTILYVGVSVSATRP 60
          MRVQDEEEEE     E ATTTQCGAPNTLN TLSFYPFPLGQ APHTILYVGVSVSATRP
Sbjct: 1  MRVQDEEEEE-----EGATTTQCGAPNTLNYTLSFYPFPLGQVAPHTILYVGVSVSATRP 60

Query: 61 VGATS 65
          VGATS
Sbjct: 61 VGATS 60

The following BLAST results are available for this feature:

BLAST of MELO3C005730.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50041.1	2.83e-28	87.69	hypothetical protein Csa_000127 [Cucumis sativus]	[more]

BLAST of MELO3C005730.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C005730.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQT1	1.37e-28	87.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151570 PE=4 SV=1	[more]

BLAST of MELO3C005730.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C005730.jh1.t1	MELO3C005730.jh1.t1	mRNA