MELO3C005268 (gene) Melon (DHL92) v4

Overview
NameMELO3C005268
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Descriptioncharged multivesicular body protein 7
Locationchr09: 18422913 .. 18423131 (+)
RNA-Seq ExpressionMELO3C005268
SyntenyMELO3C005268
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAGGAATCAAAGGGCTCTTGTGTAAGAGAGTTCATCAGGAAAAAAGTCCCAAACTGGGATGACGAAGTGGTGGCTACAGCTCGGTTTAAGGCATTTAGTAGGCAGAAATCTTATTGGGAACCCAAGTACTTATTTTGGAGGGATTTGATACTCATAGTTGCCCATCAATTCAAATTCCTTATTATAAAACCTGATGAAATAAAGAATCAATGA

mRNA sequence

ATGGAAAAGGAATCAAAGGGCTCTTGTGTAAGAGAGTTCATCAGGAAAAAAGTCCCAAACTGGGATGACGAAGTGGTGGCTACAGCTCGGTTTAAGGCATTTAGTAGGCAGAAATCTTATTGGGAACCCAAGTACTTATTTTGGAGGGATTTGATACTCATAGTTGCCCATCAATTCAAATTCCTTATTATAAAACCTGATGAAATAAAGAATCAATGA

Coding sequence (CDS)

ATGGAAAAGGAATCAAAGGGCTCTTGTGTAAGAGAGTTCATCAGGAAAAAAGTCCCAAACTGGGATGACGAAGTGGTGGCTACAGCTCGGTTTAAGGCATTTAGTAGGCAGAAATCTTATTGGGAACCCAAGTACTTATTTTGGAGGGATTTGATACTCATAGTTGCCCATCAATTCAAATTCCTTATTATAAAACCTGATGAAATAAAGAATCAATGA

Protein sequence

MEKESKGSCVREFIRKKVPNWDDEVVATARFKAFSRQKSYWEPKYLFWRDLILIVAHQFKFLIIKPDEIKNQ
Homology
[Close]
BLAST of MELO3C005268 vs. NCBI nr
Match: KGN50975.2 (hypothetical protein Csa_017819 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 63/72 (87.50%), Postives = 66/72 (91.67%), Query Frame = 0 

Query: 1  MEKESKGSCVREFIRKKVPNWDDEVVATARFKAFSRQKSYWEPKYLFWRDLILIVAHQFK 60
          MEKESKGSCVREFIR+KVP+WDDEVVATARFKAFS QKS WEP+YLFWRDLIL VA QF 
Sbjct: 1  MEKESKGSCVREFIREKVPDWDDEVVATARFKAFSGQKSDWEPRYLFWRDLILTVARQFN 60

Query: 61 FLIIKPDEIKNQ 73
          FLIIKP EIKNQ
Sbjct: 61 FLIIKPSEIKNQ 72

[Close]
BLAST of MELO3C005268 vs. NCBI nr
Match: XP_011654554.1 (charged multivesicular body protein 7 [Cucumis sativus] >XP_031742319.1 charged multivesicular body protein 7 [Cucumis sativus] >XP_031742320.1 charged multivesicular body protein 7 [Cucumis sativus] >XP_031742321.1 charged multivesicular body protein 7 [Cucumis sativus] >XP_031742322.1 charged multivesicular body protein 7 [Cucumis sativus] >XP_031742323.1 charged multivesicular body protein 7 [Cucumis sativus] >XP_031742324.1 charged multivesicular body protein 7 [Cucumis sativus] >XP_031742325.1 charged multivesicular body protein 7 [Cucumis sativus] >XP_031742326.1 charged multivesicular body protein 7 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 63/72 (87.50%), Postives = 66/72 (91.67%), Query Frame = 0 

Query: 1  MEKESKGSCVREFIRKKVPNWDDEVVATARFKAFSRQKSYWEPKYLFWRDLILIVAHQFK 60
          MEKESKGSCVREFIR+KVP+WDDEVVATARFKAFS QKS WEP+YLFWRDLIL VA QF 
Sbjct: 1  MEKESKGSCVREFIREKVPDWDDEVVATARFKAFSGQKSDWEPRYLFWRDLILTVARQFN 60

Query: 61 FLIIKPDEIKNQ 73
          FLIIKP EIKNQ
Sbjct: 61 FLIIKPSEIKNQ 72

[Close]
BLAST of MELO3C005268 vs. NCBI nr
Match: KAA0050281.1 (charged multivesicular body protein 7 isoform X2 [Cucumis melo var. makuwa] >TYJ98126.1 charged multivesicular body protein 7 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 126.7 bits (317), Expect = 8.0e-26
Identity = 61/72 (84.72%), Postives = 64/72 (88.89%), Query Frame = 0 

Query: 1  MEKESKGSCVREFIRKKVPNWDDEVVATARFKAFSRQKSYWEPKYLFWRDLILIVAHQFK 60
          MEKESKGSCVREFIR+KV +WDDEVVATARFKAFS QKS WEP+YLFWRDLIL VA Q  
Sbjct: 1  MEKESKGSCVREFIREKVLDWDDEVVATARFKAFSGQKSDWEPRYLFWRDLILTVARQLN 60

Query: 61 FLIIKPDEIKNQ 73
          FLIIKP EIKNQ
Sbjct: 61 FLIIKPSEIKNQ 72

[Close]
BLAST of MELO3C005268 vs. NCBI nr
Match: XP_008466468.1 (PREDICTED: charged multivesicular body protein 7 isoform X2 [Cucumis melo])

HSP 1 Score: 126.7 bits (317), Expect = 8.0e-26
Identity = 61/72 (84.72%), Postives = 64/72 (88.89%), Query Frame = 0 

Query: 1  MEKESKGSCVREFIRKKVPNWDDEVVATARFKAFSRQKSYWEPKYLFWRDLILIVAHQFK 60
          MEKESKGSCVREFIR+KV +WDDEVVATARFKAFS QKS WEP+YLFWRDLIL VA Q  
Sbjct: 1  MEKESKGSCVREFIREKVLDWDDEVVATARFKAFSGQKSDWEPRYLFWRDLILTVARQLN 60

Query: 61 FLIIKPDEIKNQ 73
          FLIIKP EIKNQ
Sbjct: 61 FLIIKPSEIKNQ 72

[Close]
BLAST of MELO3C005268 vs. NCBI nr
Match: XP_008466425.1 (PREDICTED: charged multivesicular body protein 7 isoform X1 [Cucumis melo] >XP_008466434.1 PREDICTED: charged multivesicular body protein 7 isoform X1 [Cucumis melo] >XP_008466443.1 PREDICTED: charged multivesicular body protein 7 isoform X1 [Cucumis melo] >XP_008466452.1 PREDICTED: charged multivesicular body protein 7 isoform X1 [Cucumis melo] >XP_008466460.1 PREDICTED: charged multivesicular body protein 7 isoform X1 [Cucumis melo])

HSP 1 Score: 126.7 bits (317), Expect = 8.0e-26
Identity = 61/72 (84.72%), Postives = 64/72 (88.89%), Query Frame = 0 

Query: 1  MEKESKGSCVREFIRKKVPNWDDEVVATARFKAFSRQKSYWEPKYLFWRDLILIVAHQFK 60
          MEKESKGSCVREFIR+KV +WDDEVVATARFKAFS QKS WEP+YLFWRDLIL VA Q  
Sbjct: 1  MEKESKGSCVREFIREKVLDWDDEVVATARFKAFSGQKSDWEPRYLFWRDLILTVARQLN 60

Query: 61 FLIIKPDEIKNQ 73
          FLIIKP EIKNQ
Sbjct: 61 FLIIKPSEIKNQ 72

[Close]
BLAST of MELO3C005268 vs. ExPASy TrEMBL
Match: A0A0A0KMY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G118690 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.4e-28
Identity = 63/72 (87.50%), Postives = 66/72 (91.67%), Query Frame = 0 

Query: 1  MEKESKGSCVREFIRKKVPNWDDEVVATARFKAFSRQKSYWEPKYLFWRDLILIVAHQFK 60
          MEKESKGSCVREFIR+KVP+WDDEVVATARFKAFS QKS WEP+YLFWRDLIL VA QF 
Sbjct: 1  MEKESKGSCVREFIREKVPDWDDEVVATARFKAFSGQKSDWEPRYLFWRDLILTVARQFN 60

Query: 61 FLIIKPDEIKNQ 73
          FLIIKP EIKNQ
Sbjct: 61 FLIIKPSEIKNQ 72

[Close]
BLAST of MELO3C005268 vs. ExPASy TrEMBL
Match: A0A1S3CRA4 (charged multivesicular body protein 7 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503835 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.9e-26
Identity = 61/72 (84.72%), Postives = 64/72 (88.89%), Query Frame = 0 

Query: 1  MEKESKGSCVREFIRKKVPNWDDEVVATARFKAFSRQKSYWEPKYLFWRDLILIVAHQFK 60
          MEKESKGSCVREFIR+KV +WDDEVVATARFKAFS QKS WEP+YLFWRDLIL VA Q  
Sbjct: 1  MEKESKGSCVREFIREKVLDWDDEVVATARFKAFSGQKSDWEPRYLFWRDLILTVARQLN 60

Query: 61 FLIIKPDEIKNQ 73
          FLIIKP EIKNQ
Sbjct: 61 FLIIKPSEIKNQ 72

[Close]
BLAST of MELO3C005268 vs. ExPASy TrEMBL
Match: A0A5D3BGE9 (Charged multivesicular body protein 7 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00010 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.9e-26
Identity = 61/72 (84.72%), Postives = 64/72 (88.89%), Query Frame = 0 

Query: 1  MEKESKGSCVREFIRKKVPNWDDEVVATARFKAFSRQKSYWEPKYLFWRDLILIVAHQFK 60
          MEKESKGSCVREFIR+KV +WDDEVVATARFKAFS QKS WEP+YLFWRDLIL VA Q  
Sbjct: 1  MEKESKGSCVREFIREKVLDWDDEVVATARFKAFSGQKSDWEPRYLFWRDLILTVARQLN 60

Query: 61 FLIIKPDEIKNQ 73
          FLIIKP EIKNQ
Sbjct: 61 FLIIKPSEIKNQ 72

[Close]
BLAST of MELO3C005268 vs. ExPASy TrEMBL
Match: A0A1S3CRC5 (charged multivesicular body protein 7 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503835 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.9e-26
Identity = 61/72 (84.72%), Postives = 64/72 (88.89%), Query Frame = 0 

Query: 1  MEKESKGSCVREFIRKKVPNWDDEVVATARFKAFSRQKSYWEPKYLFWRDLILIVAHQFK 60
          MEKESKGSCVREFIR+KV +WDDEVVATARFKAFS QKS WEP+YLFWRDLIL VA Q  
Sbjct: 1  MEKESKGSCVREFIREKVLDWDDEVVATARFKAFSGQKSDWEPRYLFWRDLILTVARQLN 60

Query: 61 FLIIKPDEIKNQ 73
          FLIIKP EIKNQ
Sbjct: 61 FLIIKPSEIKNQ 72

[Close]
BLAST of MELO3C005268 vs. ExPASy TrEMBL
Match: A0A6J1FF90 (charged multivesicular body protein 7 OS=Cucurbita moschata OX=3662 GN=LOC111444939 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.6e-24
Identity = 55/72 (76.39%), Postives = 63/72 (87.50%), Query Frame = 0 

Query: 1  MEKESKGSCVREFIRKKVPNWDDEVVATARFKAFSRQKSYWEPKYLFWRDLILIVAHQFK 60
          MEKESK   VREFIR+KVP+WD+E+VATARFKAFS QKS WEP+YLFWRDLIL +AHQF 
Sbjct: 1  MEKESKELLVREFIREKVPDWDNELVATARFKAFSGQKSDWEPRYLFWRDLILTIAHQFN 60

Query: 61 FLIIKPDEIKNQ 73
          F+ +KP EIKNQ
Sbjct: 61 FIFLKPSEIKNQ 72

[Close]
BLAST of MELO3C005268 vs. TAIR 10
Match: AT3G62080.2 (SNF7 family protein )

HSP 1 Score: 85.5 bits (210), Expect = 1.9e-17
Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 0 

Query: 4   ESKGSCVREFIRKKVPNWDDEVVATARFKAFSRQKSYWEPKYLFWRDLILIVAHQFKFLI 63
           E     V+EFIR++VP+WDDEVVA ARFKAFS Q+S WE K+ FWRDLI+ V+ QF   I
Sbjct: 39  EMDPEAVKEFIRREVPDWDDEVVAMARFKAFSGQRSDWELKFQFWRDLIIKVSRQFGLFI 98

Query: 64  IKPDEIK 71
           I P ++K
Sbjct: 99  IDPVQVK 105

[Close]
BLAST of MELO3C005268 vs. TAIR 10
Match: AT3G62080.1 (SNF7 family protein )

HSP 1 Score: 85.1 bits (209), Expect = 2.5e-17
Identity = 39/61 (63.93%), Postives = 49/61 (80.33%), Query Frame = 0 

Query: 10 VREFIRKKVPNWDDEVVATARFKAFSRQKSYWEPKYLFWRDLILIVAHQFKFLIIKPDEI 69
          V+EFIR++VP+WDDEVVA ARFKAFS Q+S WE K+ FWRDLI+ V+ QF   II P ++
Sbjct: 6  VKEFIRREVPDWDDEVVAMARFKAFSGQRSDWELKFQFWRDLIIKVSRQFGLFIIDPVQV 65

Query: 70 K 71
          K
Sbjct: 66 K 66

The following BLAST results are available for this feature:
BLAST of MELO3C005268 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50975.21.1e-2787.50hypothetical protein Csa_017819 [Cucumis sativus][more]
XP_011654554.11.1e-2787.50charged multivesicular body protein 7 [Cucumis sativus] >XP_031742319.1 charged ... [more]
KAA0050281.18.0e-2684.72charged multivesicular body protein 7 isoform X2 [Cucumis melo var. makuwa] >TYJ... [more]
XP_008466468.18.0e-2684.72PREDICTED: charged multivesicular body protein 7 isoform X2 [Cucumis melo][more]
XP_008466425.18.0e-2684.72PREDICTED: charged multivesicular body protein 7 isoform X1 [Cucumis melo] >XP_0... [more]
BLAST of MELO3C005268 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C005268 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMY25.4e-2887.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G118690 PE=4 SV=1[more]
A0A1S3CRA43.9e-2684.72charged multivesicular body protein 7 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A5D3BGE93.9e-2684.72Charged multivesicular body protein 7 isoform X2 OS=Cucumis melo var. makuwa OX=... [more]
A0A1S3CRC53.9e-2684.72charged multivesicular body protein 7 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A6J1FF903.6e-2476.39charged multivesicular body protein 7 OS=Cucurbita moschata OX=3662 GN=LOC111444... [more]
BLAST of MELO3C005268 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G62080.21.9e-1759.70SNF7 family protein [more]
AT3G62080.12.5e-1763.93SNF7 family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C005268.1MELO3C005268.1mRNA