MELO3C005164 (gene) Melon (DHL92) v4

Overview


Name	MELO3C005164
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	DUF4283 domain-containing protein/zf-CCHC_4 domain-containing protein
Location	chr09: 16861355 .. 16861720 (+)
RNA-Seq Expression	MELO3C005164
Synteny	MELO3C005164

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTGTCTTAGAAGGGTGGACTTTATTGTGTTTGTTACTTATGAATGGAAACCTCGTAGATGTAATTCTTGTAATGCCTTTGGTCACTCTAGAGGAAAGTGCCCAGGTATGGTGGTAAAACCGGTTCACACGGAAGAAGTTGTGAAGGGGGAGTCGAGTAAGGGTGATGATTTGGCGATTGTGGCCTGTGGAGATGTTGTGTTGGAGTCTTTCAAGCAAGTTAAGGAAGGTGAATTTACGGGCTCTCCAAATAAGCCCCTTACTCAGATCGAGAAAGATGCGGGTGATAGTGTTGACTTTACCCTTGTGACTAGTCATCGAAGGAGGTTGGTTTCAGTTAGAGATCATGGTGGAGGAAGTTAG

mRNA sequence

ATGGTTTGTCTTAGAAGGGTGGACTTTATTGTGTTTGTTACTTATGAATGGAAACCTCGTAGATGTAATTCTTGTAATGCCTTTGGTCACTCTAGAGGAAAGTGCCCAGGTATGGTGGTAAAACCGGTTCACACGGAAGAAGTTGTGAAGGGGGAGTCGAGTAAGGGTGATGATTTGGCGATTGTGGCCTGTGGAGATGTTGTGTTGGAGTCTTTCAAGCAAGTTAAGGAAGGTGAATTTACGGGCTCTCCAAATAAGCCCCTTACTCAGATCGAGAAAGATGCGGGTGATAGTGTTGACTTTACCCTTGTGACTAGTCATCGAAGGAGGTTGGTTTCAGTTAGAGATCATGGTGGAGGAAGTTAG

Coding sequence (CDS)

ATGGTTTGTCTTAGAAGGGTGGACTTTATTGTGTTTGTTACTTATGAATGGAAACCTCGTAGATGTAATTCTTGTAATGCCTTTGGTCACTCTAGAGGAAAGTGCCCAGGTATGGTGGTAAAACCGGTTCACACGGAAGAAGTTGTGAAGGGGGAGTCGAGTAAGGGTGATGATTTGGCGATTGTGGCCTGTGGAGATGTTGTGTTGGAGTCTTTCAAGCAAGTTAAGGAAGGTGAATTTACGGGCTCTCCAAATAAGCCCCTTACTCAGATCGAGAAAGATGCGGGTGATAGTGTTGACTTTACCCTTGTGACTAGTCATCGAAGGAGGTTGGTTTCAGTTAGAGATCATGGTGGAGGAAGTTAG

Protein sequence

MVCLRRVDFIVFVTYEWKPRRCNSCNAFGHSRGKCPGMVVKPVHTEEVVKGESSKGDDLAIVACGDVVLESFKQVKEGEFTGSPNKPLTQIEKDAGDSVDFTLVTSHRRRLVSVRDHGGGS

Homology

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BLAST of MELO3C005164 vs. NCBI nr
Match: KAA0050228.1 (hypothetical protein E6C27_scaffold355G00690 [Cucumis melo var. makuwa] >TYJ98178.1 DUF4283 domain-containing protein/zf-CCHC_4 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 226.9 bits (577), Expect = 9.6e-56
Identity = 109/115 (94.78%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 7   VDFIVFVTYEWKPRRCNSCNAFGHSRGKCPGMVVKPVHTEEVVKGESSKGDDLAIVACGD 66
           VDFIVFVTYEWKPRRCNSCN FGHSRGKCPGMVVKPVHTEEVV  ESSKGDDLAIVA GD
Sbjct: 224 VDFIVFVTYEWKPRRCNSCNVFGHSRGKCPGMVVKPVHTEEVVNEESSKGDDLAIVAYGD 283

Query: 67  VVLESFKQVKEGEFTGSPNKPLTQIEKDAGDSVDFTLVTSHRRRLVSVRDHGGGS 122
           VVLESFKQVKEGEFTGSPNKPLTQIEKDAGDSVDFTLVTSHRRRLVSVRD GG S
Sbjct: 284 VVLESFKQVKEGEFTGSPNKPLTQIEKDAGDSVDFTLVTSHRRRLVSVRDRGGES 338

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BLAST of MELO3C005164 vs. NCBI nr
Match: KAA0060724.1 (hypothetical protein E6C27_scaffold72G00110 [Cucumis melo var. makuwa] >TYK01466.1 Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 7.9e-26
Identity = 67/118 (56.78%), Postives = 77/118 (65.25%), Query Frame = 0


Query: 2   VCLRRVDFIVFVTYEWKPRRCNSCNAFGHSRGKCPGMVVKPVHTEEVV-KGESSKGDDLA 61
           V LR VDFIV + YEWKP +CN C  FGHS GKC   V   V  EEVV K   SKGD L 
Sbjct: 254 VSLRGVDFIVSINYEWKPWKCNLCCVFGHSGGKCHRNVESKVIQEEVVSKVSPSKGDGLD 313

Query: 62  IVACGDVVLESFKQVKEGEFTGSPNKPLTQIEKDAGDSVDFTLVTSHRRRLVSVRDHG 119
              CG+VVLESFKQ++EGE   S N+  +Q+EK+ G   DFTLVT  +R LV VRD G
Sbjct: 314 SEPCGEVVLESFKQLEEGEIRSSRNRHSSQVEKEVGKRDDFTLVTRKKRELVFVRDRG 371

[Close]

BLAST of MELO3C005164 vs. NCBI nr
Match: TYK28099.1 (uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 127.1 bits (318), Expect = 1.0e-25
Identity = 65/117 (55.56%), Postives = 76/117 (64.96%), Query Frame = 0


Query: 2   VCLRRVDFIVFVTYEWKPRRCNSCNAFGHSRGKCPGMVVKPVHTEEVVKGESSKGDDLAI 61
           V LR VDF V V YEWKPR+CN C AFGHS  KC   V      EEVV     KGDD+  
Sbjct: 291 VSLRGVDFNVSVNYEWKPRKCNLCCAFGHSSSKCSRSVESKTIQEEVV----HKGDDVDF 350

Query: 62  VACGDVVLESFKQVKEGEFTGSPNKPLTQIEKDAGDSVDFTLVTSHRRRLVSVRDHG 119
             CG+VVLESFKQV++GE   SPN+  +Q+EK  G S +FTLVT  +  LVS+RD G
Sbjct: 351 ELCGEVVLESFKQVEKGEIRSSPNRHDSQVEKGVGKSDEFTLVTRKKSELVSIRDRG 403

[Close]

BLAST of MELO3C005164 vs. NCBI nr
Match: KAA0026071.1 (uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 127.1 bits (318), Expect = 1.0e-25
Identity = 65/117 (55.56%), Postives = 76/117 (64.96%), Query Frame = 0


Query: 2   VCLRRVDFIVFVTYEWKPRRCNSCNAFGHSRGKCPGMVVKPVHTEEVVKGESSKGDDLAI 61
           V LR VDF V V YEWKPR+CN C AFGHS  KC   V      EEVV     KGDD+  
Sbjct: 291 VSLRGVDFNVSVNYEWKPRKCNLCCAFGHSSSKCSRSVESKTIQEEVV----HKGDDVDF 350

Query: 62  VACGDVVLESFKQVKEGEFTGSPNKPLTQIEKDAGDSVDFTLVTSHRRRLVSVRDHG 119
             CG+VVLESFKQV++GE   SPN+  +Q+EK  G S +FTLVT  +  LVS+RD G
Sbjct: 351 ELCGEVVLESFKQVEKGEIRSSPNRHDSQVEKGVGKSDEFTLVTRKKSELVSIRDRG 403

[Close]

BLAST of MELO3C005164 vs. NCBI nr
Match: TYK18951.1 (uncharacterized protein E5676_scaffold418G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 125.6 bits (314), Expect = 3.0e-25
Identity = 65/117 (55.56%), Postives = 75/117 (64.10%), Query Frame = 0


Query: 2   VCLRRVDFIVFVTYEWKPRRCNSCNAFGHSRGKCPGMVVKPVHTEEVVKGESSKGDDLAI 61
           V LR VDF V V YEWKPR+CN C AFGHS   C   V      EEVV     KGDD+  
Sbjct: 486 VSLRGVDFNVSVNYEWKPRKCNLCCAFGHSGSNCSRSVESKTIQEEVV----HKGDDVDS 545

Query: 62  VACGDVVLESFKQVKEGEFTGSPNKPLTQIEKDAGDSVDFTLVTSHRRRLVSVRDHG 119
             CG+VVLESFKQ++EGE   SPN+  +Q+EK  G S +FTLVT  +  LVSVRD G
Sbjct: 546 EPCGEVVLESFKQLEEGEIRNSPNRHNSQVEKGVGKSDEFTLVTRRKSELVSVRDRG 598

[Close]

BLAST of MELO3C005164 vs. ExPASy TrEMBL
Match: A0A5A7U4N3 (DUF4283 domain-containing protein/zf-CCHC_4 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00630 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.6e-56
Identity = 109/115 (94.78%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 7   VDFIVFVTYEWKPRRCNSCNAFGHSRGKCPGMVVKPVHTEEVVKGESSKGDDLAIVACGD 66
           VDFIVFVTYEWKPRRCNSCN FGHSRGKCPGMVVKPVHTEEVV  ESSKGDDLAIVA GD
Sbjct: 224 VDFIVFVTYEWKPRRCNSCNVFGHSRGKCPGMVVKPVHTEEVVNEESSKGDDLAIVAYGD 283

Query: 67  VVLESFKQVKEGEFTGSPNKPLTQIEKDAGDSVDFTLVTSHRRRLVSVRDHGGGS 122
           VVLESFKQVKEGEFTGSPNKPLTQIEKDAGDSVDFTLVTSHRRRLVSVRD GG S
Sbjct: 284 VVLESFKQVKEGEFTGSPNKPLTQIEKDAGDSVDFTLVTSHRRRLVSVRDRGGES 338

[Close]

BLAST of MELO3C005164 vs. ExPASy TrEMBL
Match: A0A5A7V084 (Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00100 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.8e-26
Identity = 67/118 (56.78%), Postives = 77/118 (65.25%), Query Frame = 0


Query: 2   VCLRRVDFIVFVTYEWKPRRCNSCNAFGHSRGKCPGMVVKPVHTEEVV-KGESSKGDDLA 61
           V LR VDFIV + YEWKP +CN C  FGHS GKC   V   V  EEVV K   SKGD L 
Sbjct: 254 VSLRGVDFIVSINYEWKPWKCNLCCVFGHSGGKCHRNVESKVIQEEVVSKVSPSKGDGLD 313

Query: 62  IVACGDVVLESFKQVKEGEFTGSPNKPLTQIEKDAGDSVDFTLVTSHRRRLVSVRDHG 119
              CG+VVLESFKQ++EGE   S N+  +Q+EK+ G   DFTLVT  +R LV VRD G
Sbjct: 314 SEPCGEVVLESFKQLEEGEIRSSRNRHSSQVEKEVGKRDDFTLVTRKKRELVFVRDRG 371

[Close]

BLAST of MELO3C005164 vs. ExPASy TrEMBL
Match: A0A5A7SPE5 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold581G00620 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.0e-26
Identity = 65/117 (55.56%), Postives = 76/117 (64.96%), Query Frame = 0


Query: 2   VCLRRVDFIVFVTYEWKPRRCNSCNAFGHSRGKCPGMVVKPVHTEEVVKGESSKGDDLAI 61
           V LR VDF V V YEWKPR+CN C AFGHS  KC   V      EEVV     KGDD+  
Sbjct: 291 VSLRGVDFNVSVNYEWKPRKCNLCCAFGHSSSKCSRSVESKTIQEEVV----HKGDDVDF 350

Query: 62  VACGDVVLESFKQVKEGEFTGSPNKPLTQIEKDAGDSVDFTLVTSHRRRLVSVRDHG 119
             CG+VVLESFKQV++GE   SPN+  +Q+EK  G S +FTLVT  +  LVS+RD G
Sbjct: 351 ELCGEVVLESFKQVEKGEIRSSPNRHDSQVEKGVGKSDEFTLVTRKKSELVSIRDRG 403

[Close]

BLAST of MELO3C005164 vs. ExPASy TrEMBL
Match: A0A5D3DXE4 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1467G00020 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.0e-26
Identity = 65/117 (55.56%), Postives = 76/117 (64.96%), Query Frame = 0


Query: 2   VCLRRVDFIVFVTYEWKPRRCNSCNAFGHSRGKCPGMVVKPVHTEEVVKGESSKGDDLAI 61
           V LR VDF V V YEWKPR+CN C AFGHS  KC   V      EEVV     KGDD+  
Sbjct: 291 VSLRGVDFNVSVNYEWKPRKCNLCCAFGHSSSKCSRSVESKTIQEEVV----HKGDDVDF 350

Query: 62  VACGDVVLESFKQVKEGEFTGSPNKPLTQIEKDAGDSVDFTLVTSHRRRLVSVRDHG 119
             CG+VVLESFKQV++GE   SPN+  +Q+EK  G S +FTLVT  +  LVS+RD G
Sbjct: 351 ELCGEVVLESFKQVEKGEIRSSPNRHDSQVEKGVGKSDEFTLVTRKKSELVSIRDRG 403

[Close]

BLAST of MELO3C005164 vs. ExPASy TrEMBL
Match: A0A5A7U3C2 (Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00410 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.5e-25
Identity = 66/117 (56.41%), Postives = 75/117 (64.10%), Query Frame = 0


Query: 2   VCLRRVDFIVFVTYEWKPRRCNSCNAFGHSRGKCPGMVVKPVHTEEVVKGESSKGDDLAI 61
           V LR VDF V V YEWKPR+CN C AFGHS  KC   V      EEVV     KGD L  
Sbjct: 53  VSLRGVDFNVSVNYEWKPRKCNLCCAFGHSGSKCSRSVESKTIQEEVV----HKGDGLDS 112

Query: 62  VACGDVVLESFKQVKEGEFTGSPNKPLTQIEKDAGDSVDFTLVTSHRRRLVSVRDHG 119
             CG+VVLESFKQ++EG+   SPN+  +Q+EK  G S DFTLVT  +  LVSVRD G
Sbjct: 113 EPCGEVVLESFKQLEEGKIRSSPNRHNSQVEKGVGKSDDFTLVTRKKSELVSVRDRG 165

The following BLAST results are available for this feature:

BLAST of MELO3C005164 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050228.1	9.6e-56	94.78	hypothetical protein E6C27_scaffold355G00690 [Cucumis melo var. makuwa] >TYJ9817...	[more]
KAA0060724.1	7.9e-26	56.78	hypothetical protein E6C27_scaffold72G00110 [Cucumis melo var. makuwa] >TYK01466...	[more]
TYK28099.1	1.0e-25	55.56	uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]	[more]
KAA0026071.1	1.0e-25	55.56	uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa]	[more]
TYK18951.1	3.0e-25	55.56	uncharacterized protein E5676_scaffold418G00380 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C005164 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C005164 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U4N3	4.6e-56	94.78	DUF4283 domain-containing protein/zf-CCHC_4 domain-containing protein OS=Cucumis...	[more]
A0A5A7V084	3.8e-26	56.78	Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein OS=Cuc...	[more]
A0A5A7SPE5	5.0e-26	55.56	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3DXE4	5.0e-26	55.56	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7U3C2	1.5e-25	56.41	Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein OS=Cuc...	[more]

BLAST of MELO3C005164 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C005164.1	MELO3C005164.1	mRNA