MELO3C005110 (gene) Melon (DHL92) v4

Overview


Name	MELO3C005110
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr09: 16055477 .. 16055755 (-)
RNA-Seq Expression	MELO3C005110
Synteny	MELO3C005110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCGCTTTGCTGAGACATTCGTCGACGTGGGGTCTAACGAACCTGTCGGGTATGAGGGGTTTGACATGCCAGATGGGAATGAGGAGTTTCCATCCGTGTACAGCCAAGGGATCGACATGTCTAAGAAGGATGTACGCGTATCACGACCTTCTCGCACGTTAGAGGGTAGAGTCGAATCAAAGAGGAAGAGGGGAAGCCAGCAAGAAGGCGAGATTGAAGTCATACATATGGCCCTCGAGTGTACGAATGAACAACTCATGACAATTGCAGAGTGA

mRNA sequence

ATGGATCGCTTTGCTGAGACATTCGTCGACGTGGGGTCTAACGAACCTGTCGGGTATGAGGGGTTTGACATGCCAGATGGGAATGAGGAGTTTCCATCCGTGTACAGCCAAGGGATCGACATGTCTAAGAAGGATGTACGCGTATCACGACCTTCTCGCACGTTAGAGGGTAGAGTCGAATCAAAGAGGAAGAGGGGAAGCCAGCAAGAAGGCGAGATTGAAGTCATACATATGGCCCTCGAGTGTACGAATGAACAACTCATGACAATTGCAGAGTGA

Coding sequence (CDS)

ATGGATCGCTTTGCTGAGACATTCGTCGACGTGGGGTCTAACGAACCTGTCGGGTATGAGGGGTTTGACATGCCAGATGGGAATGAGGAGTTTCCATCCGTGTACAGCCAAGGGATCGACATGTCTAAGAAGGATGTACGCGTATCACGACCTTCTCGCACGTTAGAGGGTAGAGTCGAATCAAAGAGGAAGAGGGGAAGCCAGCAAGAAGGCGAGATTGAAGTCATACATATGGCCCTCGAGTGTACGAATGAACAACTCATGACAATTGCAGAGTGA

Protein sequence

MDRFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRVSRPSRTLEGRVESKRKRGSQQEGEIEVIHMALECTNEQLMTIAE

Homology

[Close]

BLAST of MELO3C005110 vs. NCBI nr
Match: KAA0066074.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ99823.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 176.4 bits (446), Expect = 1.1e-40
Identity = 89/92 (96.74%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1   MDRFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRVSRPSRTLEGRVE 60
           M RFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVR SRPSRTLEGRV 
Sbjct: 66  MGRFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRASRPSRTLEGRVG 125

Query: 61  SKRKRGSQQEGEIEVIHMALECTNEQLMTIAE 93
           SKRKRGSQQEGEIEVIHMALECTNEQLMTIAE
Sbjct: 126 SKRKRGSQQEGEIEVIHMALECTNEQLMTIAE 157

[Close]

BLAST of MELO3C005110 vs. NCBI nr
Match: KAA0051922.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK12240.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 5.2e-30
Identity = 70/93 (75.27%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 3   RFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRVSRPSRTLEGRVES- 62
           RF ETFVDVGSNEP GY+GFDMPDGNE+F SVY+QGIDMS++DVR SRP   L+GR+ES 
Sbjct: 38  RFVETFVDVGSNEPAGYDGFDMPDGNEQFSSVYNQGIDMSQEDVRASRPFLALKGRIESS 97

Query: 63  --KRKRGSQQEGEIEVIHMALECTNEQLMTIAE 93
             K KRG+QQEGE+EVIHMALECTN+ L TIAE
Sbjct: 98  ELKTKRGNQQEGELEVIHMALECTNDHLRTIAE 130

[Close]

BLAST of MELO3C005110 vs. NCBI nr
Match: KAA0066185.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 137.9 bits (346), Expect = 4.4e-29
Identity = 71/93 (76.34%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 3   RFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRVSRPSRTLEGRVES- 62
           RF ETFVDV SNEPV YEGFDMP+GNEEFPS+Y+QGIDMS+KDVR SR SR  EGR +S 
Sbjct: 222 RFVETFVDVRSNEPVEYEGFDMPNGNEEFPSMYNQGIDMSQKDVRTSRTSRVSEGRAKSS 281

Query: 63  --KRKRGSQQEGEIEVIHMALECTNEQLMTIAE 93
             KRKRGSQ+EG+IEVIHMALEC N+Q  TIAE
Sbjct: 282 RLKRKRGSQREGKIEVIHMALECMNDQFRTIAE 314

[Close]

BLAST of MELO3C005110 vs. NCBI nr
Match: TYK15225.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 137.9 bits (346), Expect = 4.4e-29
Identity = 71/93 (76.34%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 3   RFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRVSRPSRTLEGRVES- 62
           RF ETFVDV SNEPV YEGFDMP+GNEEFPS+Y+QGIDMS+KDVR SR SR  EGR +S 
Sbjct: 218 RFVETFVDVRSNEPVEYEGFDMPNGNEEFPSMYNQGIDMSQKDVRTSRTSRVSEGRAKSS 277

Query: 63  --KRKRGSQQEGEIEVIHMALECTNEQLMTIAE 93
             KRKRGSQ+EG+IEVIHMALEC N+Q  TIAE
Sbjct: 278 RLKRKRGSQREGKIEVIHMALECMNDQFRTIAE 310

[Close]

BLAST of MELO3C005110 vs. NCBI nr
Match: KAA0065782.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96521.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 134.0 bits (336), Expect = 6.4e-28
Identity = 67/92 (72.83%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 4   FAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRVSRPSRTLEGRV---E 63
           FAETF DVGSNEP+ YEGFD+PDGN+EFPSVY+QGI+MS++DVR S+PSR  EGRV    
Sbjct: 83  FAETFTDVGSNEPIRYEGFDIPDGNKEFPSVYNQGINMSQEDVRASQPSRAFEGRVGSSG 142

Query: 64  SKRKRGSQQEGEIEVIHMALECTNEQLMTIAE 93
           SKRKRGSQQE E+EVI+MA ECTN+QL  +AE
Sbjct: 143 SKRKRGSQQEAELEVIYMARECTNDQLKIVAE 174

[Close]

BLAST of MELO3C005110 vs. ExPASy TrEMBL
Match: A0A5A7VFJ2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00250 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 5.5e-41
Identity = 89/92 (96.74%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1   MDRFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRVSRPSRTLEGRVE 60
           M RFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVR SRPSRTLEGRV 
Sbjct: 66  MGRFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRASRPSRTLEGRVG 125

Query: 61  SKRKRGSQQEGEIEVIHMALECTNEQLMTIAE 93
           SKRKRGSQQEGEIEVIHMALECTNEQLMTIAE
Sbjct: 126 SKRKRGSQQEGEIEVIHMALECTNEQLMTIAE 157

[Close]

BLAST of MELO3C005110 vs. ExPASy TrEMBL
Match: A0A5D3CLE8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00480 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.5e-30
Identity = 70/93 (75.27%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 3   RFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRVSRPSRTLEGRVES- 62
           RF ETFVDVGSNEP GY+GFDMPDGNE+F SVY+QGIDMS++DVR SRP   L+GR+ES 
Sbjct: 38  RFVETFVDVGSNEPAGYDGFDMPDGNEQFSSVYNQGIDMSQEDVRASRPFLALKGRIESS 97

Query: 63  --KRKRGSQQEGEIEVIHMALECTNEQLMTIAE 93
             K KRG+QQEGE+EVIHMALECTN+ L TIAE
Sbjct: 98  ELKTKRGNQQEGELEVIHMALECTNDHLRTIAE 130

[Close]

BLAST of MELO3C005110 vs. ExPASy TrEMBL
Match: A0A5D3CUK6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G001070 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.1e-29
Identity = 71/93 (76.34%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 3   RFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRVSRPSRTLEGRVES- 62
           RF ETFVDV SNEPV YEGFDMP+GNEEFPS+Y+QGIDMS+KDVR SR SR  EGR +S 
Sbjct: 218 RFVETFVDVRSNEPVEYEGFDMPNGNEEFPSMYNQGIDMSQKDVRTSRTSRVSEGRAKSS 277

Query: 63  --KRKRGSQQEGEIEVIHMALECTNEQLMTIAE 93
             KRKRGSQ+EG+IEVIHMALEC N+Q  TIAE
Sbjct: 278 RLKRKRGSQREGKIEVIHMALECMNDQFRTIAE 310

[Close]

BLAST of MELO3C005110 vs. ExPASy TrEMBL
Match: A0A5A7VKA9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G001980 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.1e-29
Identity = 71/93 (76.34%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 3   RFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRVSRPSRTLEGRVES- 62
           RF ETFVDV SNEPV YEGFDMP+GNEEFPS+Y+QGIDMS+KDVR SR SR  EGR +S 
Sbjct: 222 RFVETFVDVRSNEPVEYEGFDMPNGNEEFPSMYNQGIDMSQKDVRTSRTSRVSEGRAKSS 281

Query: 63  --KRKRGSQQEGEIEVIHMALECTNEQLMTIAE 93
             KRKRGSQ+EG+IEVIHMALEC N+Q  TIAE
Sbjct: 282 RLKRKRGSQREGKIEVIHMALECMNDQFRTIAE 314

[Close]

BLAST of MELO3C005110 vs. ExPASy TrEMBL
Match: A0A5D3BD15 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001730 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.1e-28
Identity = 67/92 (72.83%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 4   FAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRVSRPSRTLEGRV---E 63
           FAETF DVGSNEP+ YEGFD+PDGN+EFPSVY+QGI+MS++DVR S+PSR  EGRV    
Sbjct: 83  FAETFTDVGSNEPIRYEGFDIPDGNKEFPSVYNQGINMSQEDVRASQPSRAFEGRVGSSG 142

Query: 64  SKRKRGSQQEGEIEVIHMALECTNEQLMTIAE 93
           SKRKRGSQQE E+EVI+MA ECTN+QL  +AE
Sbjct: 143 SKRKRGSQQEAELEVIYMARECTNDQLKIVAE 174

The following BLAST results are available for this feature:

BLAST of MELO3C005110 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066074.1	1.1e-40	96.74	retrotransposon protein [Cucumis melo var. makuwa] >TYJ99823.1 retrotransposon p...	[more]
KAA0051922.1	5.2e-30	75.27	retrotransposon protein [Cucumis melo var. makuwa] >TYK12240.1 retrotransposon p...	[more]
KAA0066185.1	4.4e-29	76.34	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK15225.1	4.4e-29	76.34	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065782.1	6.4e-28	72.83	retrotransposon protein [Cucumis melo var. makuwa] >TYJ96521.1 retrotransposon p...	[more]

BLAST of MELO3C005110 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C005110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VFJ2	5.5e-41	96.74	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CLE8	2.5e-30	75.27	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CUK6	2.1e-29	76.34	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VKA9	2.1e-29	76.34	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BD15	3.1e-28	72.83	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C005110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C005110.1	MELO3C005110.1	mRNA