Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGGAAAAGACTACACGATAAAGGCCCATGCGGAGATGTTTAGAGACATCGGGTGCAACATGTTAGGACCCAACGACGGTGTCCCCGCAGAGGATGGCTTAGAGATGGAGTTAATGGCTATGTACAGTCTGAGGATGAACATGTCATCAAACGACATGATGGCCAGTCGTTTTGGTCAGTCCAACTATGCTAGGTCGAGCTCTAATGGTCAGAAAAGGAAGCGCGACATGCAGCCGTTTGAGACTTATGATCTTAATCGGGATGCCATGGACGCTGCAAATGATCAGATTAGAATCATTGCTAAATGGCCTGATAGAGCTATCCATCGAGAGGATGCGATGGTGCGGGAAGTCATTACGCATATAGAGTTTATTCCGGGCCTTAGTATGGAGGACATCAGTAAATGCGTGATGATAGTGACAGAGAAGGTATTGCTAATGAGAAGCTTCATCAAGATGCCCGATTCGATGTAG
mRNA sequence
ATGTTTGGAAAAGACTACACGATAAAGGCCCATGCGGAGATGTTTAGAGACATCGGGTGCAACATGTTAGGACCCAACGACGGTGTCCCCGCAGAGGATGGCTTAGAGATGGAGTTAATGGCTATGTACAGTCTGAGGATGAACATGTCATCAAACGACATGATGGCCAGTCGTTTTGGTCAGTCCAACTATGCTAGGTCGAGCTCTAATGGTCAGAAAAGGAAGCGCGACATGCAGCCGTTTGAGACTTATGATCTTAATCGGGATGCCATGGACGCTGCAAATGATCAGATTAGAATCATTGCTAAATGGCCTGATAGAGCTATCCATCGAGAGGATGCGATGGTGCGGGAAGTCATTACGCATATAGAGTTTATTCCGGGCCTTAGTATGGAGGACATCAGTAAATGCGTGATGATAGTGACAGAGAAGGTATTGCTAATGAGAAGCTTCATCAAGATGCCCGATTCGATGTAG
Coding sequence (CDS)
ATGTTTGGAAAAGACTACACGATAAAGGCCCATGCGGAGATGTTTAGAGACATCGGGTGCAACATGTTAGGACCCAACGACGGTGTCCCCGCAGAGGATGGCTTAGAGATGGAGTTAATGGCTATGTACAGTCTGAGGATGAACATGTCATCAAACGACATGATGGCCAGTCGTTTTGGTCAGTCCAACTATGCTAGGTCGAGCTCTAATGGTCAGAAAAGGAAGCGCGACATGCAGCCGTTTGAGACTTATGATCTTAATCGGGATGCCATGGACGCTGCAAATGATCAGATTAGAATCATTGCTAAATGGCCTGATAGAGCTATCCATCGAGAGGATGCGATGGTGCGGGAAGTCATTACGCATATAGAGTTTATTCCGGGCCTTAGTATGGAGGACATCAGTAAATGCGTGATGATAGTGACAGAGAAGGTATTGCTAATGAGAAGCTTCATCAAGATGCCCGATTCGATGTAG
Protein sequence
MFGKDYTIKAHAEMFRDIGCNMLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRIIAKWPDRAIHREDAMVREVITHIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM
Homology
BLAST of MELO3C005010 vs. NCBI nr
Match:
KAA0051928.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK12234.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 268.5 bits (685), Expect = 3.7e-68
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0
Query: 22 MLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPF 81
MLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPF
Sbjct: 1 MLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPF 60
Query: 82 ETYDLNRDAMDAANDQIRIIAKWPDRAIHREDAMVREVITHIEFIPGLSMEDISKCVMIV 141
ETYDLNRDAMDAANDQIRIIAKWPDRAIHREDAMVREVITHIEFIPGLSMEDISKCVMIV
Sbjct: 61 ETYDLNRDAMDAANDQIRIIAKWPDRAIHREDAMVREVITHIEFIPGLSMEDISKCVMIV 120
Query: 142 TEKVLLMRSFIKMPDSM 159
TEKVLLMRSFIKMPDSM
Sbjct: 121 TEKVLLMRSFIKMPDSM 137
BLAST of MELO3C005010 vs. NCBI nr
Match:
KAA0048148.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 160.2 bits (404), Expect = 1.4e-35
Identity = 86/158 (54.43%), Postives = 106/158 (67.09%), Query Frame = 0
Query: 1 MFGKDYTIKAHAEMFRDIGCNMLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFG 60
+F KD AHAE F DI NM D VP +DG++ME M S RMNMS DMM R G
Sbjct: 22 VFEKDQATGAHAETFADIDSNMSAGYDSVPTKDGIDMEFPVMCSPRMNMSPKDMMGGRSG 81
Query: 61 QSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRIIAKWPDRAIHREDAMVREVI 120
+S+ R+ S+ QKRK MQ FETYDL R+ M+AA DQ+R IA+WP +A+ ED M +VI
Sbjct: 82 RSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATDQLRTIAEWPKKAMSWEDTMAAQVI 141
Query: 121 THIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM 159
I+ I L+M + SKCVM+V +KV LMRSFIKMPD M
Sbjct: 142 ELIKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPDLM 179
BLAST of MELO3C005010 vs. NCBI nr
Match:
KAA0064184.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 155.2 bits (391), Expect = 4.6e-34
Identity = 87/158 (55.06%), Postives = 105/158 (66.46%), Query Frame = 0
Query: 1 MFGKDYTIKAHAEMFRDIGCNMLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFG 60
+FGKD A AE F DI N+ ND VPAEDG+ ME AM RMNMS DMM+ R
Sbjct: 164 VFGKDRATGACAETFADIDSNVQTDNDSVPAEDGINMEFPAMCRPRMNMSPKDMMSGRSS 223
Query: 61 QSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRIIAKWPDRAIHREDAMVREVI 120
QS+ AR S+ QKRKR MQ ETYDL R M+ A DQ+R I +WP++A+ RED M +VI
Sbjct: 224 QSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVI 283
Query: 121 THIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM 159
E IP L++ + SKC+MIV +KV L RSFIKM DSM
Sbjct: 284 ELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFDSM 321
BLAST of MELO3C005010 vs. NCBI nr
Match:
TYK02844.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 155.2 bits (391), Expect = 4.6e-34
Identity = 87/158 (55.06%), Postives = 105/158 (66.46%), Query Frame = 0
Query: 1 MFGKDYTIKAHAEMFRDIGCNMLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFG 60
+FGKD A AE F DI N+ ND VPAEDG+ ME AM RMNMS DMM+ R
Sbjct: 51 VFGKDRATGACAETFADIDSNVQTDNDSVPAEDGINMEFPAMCRPRMNMSPKDMMSGRSS 110
Query: 61 QSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRIIAKWPDRAIHREDAMVREVI 120
QS+ AR S+ QKRKR MQ ETYDL R M+ A DQ+R I +WP++A+ RED M +VI
Sbjct: 111 QSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVI 170
Query: 121 THIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM 159
E IP L++ + SKC+MIV +KV L RSFIKM DSM
Sbjct: 171 ELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFDSM 208
BLAST of MELO3C005010 vs. NCBI nr
Match:
KAA0033551.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ95636.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 143.7 bits (361), Expect = 1.4e-30
Identity = 77/130 (59.23%), Postives = 94/130 (72.31%), Query Frame = 0
Query: 29 VPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNR 88
VP +D ++ME AM S RMNMS +MM R G+SN R SNGQKRK MQ FETYDL
Sbjct: 71 VPTKDVIDMEFPAMCSPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIH 130
Query: 89 DAMDAANDQIRIIAKWPDRAIHREDAMVREVITHIEFIPGLSMEDISKCVMIVTEKVLLM 148
+ M+AA DQ+R IA+WP++ + EDAM +VI IE IP L+M + SKCVM+V +KV LM
Sbjct: 131 ECMEAATDQLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLM 190
Query: 149 RSFIKMPDSM 159
RSFIKMPDSM
Sbjct: 191 RSFIKMPDSM 200
BLAST of MELO3C005010 vs. ExPASy TrEMBL
Match:
A0A5D3CM76 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00400 PE=4 SV=1)
HSP 1 Score: 268.5 bits (685), Expect = 1.8e-68
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0
Query: 22 MLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPF 81
MLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPF
Sbjct: 1 MLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPF 60
Query: 82 ETYDLNRDAMDAANDQIRIIAKWPDRAIHREDAMVREVITHIEFIPGLSMEDISKCVMIV 141
ETYDLNRDAMDAANDQIRIIAKWPDRAIHREDAMVREVITHIEFIPGLSMEDISKCVMIV
Sbjct: 61 ETYDLNRDAMDAANDQIRIIAKWPDRAIHREDAMVREVITHIEFIPGLSMEDISKCVMIV 120
Query: 142 TEKVLLMRSFIKMPDSM 159
TEKVLLMRSFIKMPDSM
Sbjct: 121 TEKVLLMRSFIKMPDSM 137
BLAST of MELO3C005010 vs. ExPASy TrEMBL
Match:
A0A5A7TYU4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002690 PE=4 SV=1)
HSP 1 Score: 160.2 bits (404), Expect = 6.9e-36
Identity = 86/158 (54.43%), Postives = 106/158 (67.09%), Query Frame = 0
Query: 1 MFGKDYTIKAHAEMFRDIGCNMLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFG 60
+F KD AHAE F DI NM D VP +DG++ME M S RMNMS DMM R G
Sbjct: 22 VFEKDQATGAHAETFADIDSNMSAGYDSVPTKDGIDMEFPVMCSPRMNMSPKDMMGGRSG 81
Query: 61 QSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRIIAKWPDRAIHREDAMVREVI 120
+S+ R+ S+ QKRK MQ FETYDL R+ M+AA DQ+R IA+WP +A+ ED M +VI
Sbjct: 82 RSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATDQLRTIAEWPKKAMSWEDTMAAQVI 141
Query: 121 THIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM 159
I+ I L+M + SKCVM+V +KV LMRSFIKMPD M
Sbjct: 142 ELIKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPDLM 179
BLAST of MELO3C005010 vs. ExPASy TrEMBL
Match:
A0A5D3BUJ4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00420 PE=4 SV=1)
HSP 1 Score: 155.2 bits (391), Expect = 2.2e-34
Identity = 87/158 (55.06%), Postives = 105/158 (66.46%), Query Frame = 0
Query: 1 MFGKDYTIKAHAEMFRDIGCNMLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFG 60
+FGKD A AE F DI N+ ND VPAEDG+ ME AM RMNMS DMM+ R
Sbjct: 51 VFGKDRATGACAETFADIDSNVQTDNDSVPAEDGINMEFPAMCRPRMNMSPKDMMSGRSS 110
Query: 61 QSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRIIAKWPDRAIHREDAMVREVI 120
QS+ AR S+ QKRKR MQ ETYDL R M+ A DQ+R I +WP++A+ RED M +VI
Sbjct: 111 QSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVI 170
Query: 121 THIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM 159
E IP L++ + SKC+MIV +KV L RSFIKM DSM
Sbjct: 171 ELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFDSM 208
BLAST of MELO3C005010 vs. ExPASy TrEMBL
Match:
A0A5A7VAC3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G001190 PE=3 SV=1)
HSP 1 Score: 155.2 bits (391), Expect = 2.2e-34
Identity = 87/158 (55.06%), Postives = 105/158 (66.46%), Query Frame = 0
Query: 1 MFGKDYTIKAHAEMFRDIGCNMLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFG 60
+FGKD A AE F DI N+ ND VPAEDG+ ME AM RMNMS DMM+ R
Sbjct: 164 VFGKDRATGACAETFADIDSNVQTDNDSVPAEDGINMEFPAMCRPRMNMSPKDMMSGRSS 223
Query: 61 QSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRIIAKWPDRAIHREDAMVREVI 120
QS+ AR S+ QKRKR MQ ETYDL R M+ A DQ+R I +WP++A+ RED M +VI
Sbjct: 224 QSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVI 283
Query: 121 THIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM 159
E IP L++ + SKC+MIV +KV L RSFIKM DSM
Sbjct: 284 ELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFDSM 321
BLAST of MELO3C005010 vs. ExPASy TrEMBL
Match:
A0A5D3B9T0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00610 PE=4 SV=1)
HSP 1 Score: 143.7 bits (361), Expect = 6.7e-31
Identity = 77/130 (59.23%), Postives = 94/130 (72.31%), Query Frame = 0
Query: 29 VPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNR 88
VP +D ++ME AM S RMNMS +MM R G+SN R SNGQKRK MQ FETYDL
Sbjct: 71 VPTKDVIDMEFPAMCSPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIH 130
Query: 89 DAMDAANDQIRIIAKWPDRAIHREDAMVREVITHIEFIPGLSMEDISKCVMIVTEKVLLM 148
+ M+AA DQ+R IA+WP++ + EDAM +VI IE IP L+M + SKCVM+V +KV LM
Sbjct: 131 ECMEAATDQLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLM 190
Query: 149 RSFIKMPDSM 159
RSFIKMPDSM
Sbjct: 191 RSFIKMPDSM 200
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAA0051928.1 | 3.7e-68 | 100.00 | retrotransposon protein [Cucumis melo var. makuwa] >TYK12234.1 retrotransposon p... | [more] |
| KAA0048148.1 | 1.4e-35 | 54.43 | retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon p... | [more] |
| KAA0064184.1 | 4.6e-34 | 55.06 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| TYK02844.1 | 4.6e-34 | 55.06 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0033551.1 | 1.4e-30 | 59.23 | retrotransposon protein [Cucumis melo var. makuwa] >TYJ95636.1 retrotransposon p... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3CM76 | 1.8e-68 | 100.00 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7TYU4 | 6.9e-36 | 54.43 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3BUJ4 | 2.2e-34 | 55.06 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7VAC3 | 2.2e-34 | 55.06 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5D3B9T0 | 6.7e-31 | 59.23 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
