MELO3C004883.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C004883.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionReverse transcriptase
Locationchr12: 8076282 .. 8076488 (+)
RNA-Seq ExpressionMELO3C004883.jh1
SyntenyMELO3C004883.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACAGAGATTTTAGGGAGCTTGTTAGCTCAGCTTCAGGTTAGGTCTTCTCTGATAGCTGAGATTGTTAGAAAGCAGTTAGAAGACAGTCAACTTCAGAAAAGGCTTGAAAAGACCAAGCAAAGCCAAGAAACTGAATTTGAGTTGAGGTCAGATGAAGCCATAGGTAAGGTAGACTATGTGTTCCAAGTGTTAGAGAATTGA

mRNA sequence

ATGGCTACAGAGATTTTAGGGAGCTTGTTAGCTCAGCTTCAGGTTAGGTCTTCTCTGATAGCTGAGATTGTTAGAAAGCAGTTAGAAGACAGTCAACTTCAGAAAAGGCTTGAAAAGACCAAGCAAAGCCAAGAAACTGAATTTGAGTTGAGGTCAGATGAAGCCATAGGTAAGGTAGACTATGTGTTCCAAGTGTTAGAGAATTGA

Coding sequence (CDS)

ATGGCTACAGAGATTTTAGGGAGCTTGTTAGCTCAGCTTCAGGTTAGGTCTTCTCTGATAGCTGAGATTGTTAGAAAGCAGTTAGAAGACAGTCAACTTCAGAAAAGGCTTGAAAAGACCAAGCAAAGCCAAGAAACTGAATTTGAGTTGAGGTCAGATGAAGCCATAGGTAAGGTAGACTATGTGTTCCAAGTGTTAGAGAATTGA

Protein sequence

MATEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAIGKVDYVFQVLEN
Homology
BLAST of MELO3C004883.jh1 vs. NCBI nr
Match: KAA0025165.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 7.07e-11
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 3   TEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAIGK 58
           TE  GSLLAQ QVRSSL+ EIVR+Q EDS LQK+ EK+K+  E EFELR+DEAI K
Sbjct: 432 TEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDEAIVK 487

BLAST of MELO3C004883.jh1 vs. NCBI nr
Match: KAA0060864.1 (retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 7.10e-11
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 3   TEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAIGK 58
           TE  GSLLAQ QVRSSL+ EIVR+Q EDS LQK+ EK+K+  E EFELR+DEAI K
Sbjct: 808 TEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDEAIVK 863

BLAST of MELO3C004883.jh1 vs. NCBI nr
Match: KAA0054351.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK12388.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 8.54e-11
Identity = 41/67 (61.19%), Postives = 49/67 (73.13%), Query Frame = 0

Query: 1   MATEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAI-GKV 60
           M  E  GSLLAQ QVRSSL+AEIV +Q EDS LQK L K KQ +E EFELR++ AI  + 
Sbjct: 217 MTAESSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKAKQGREAEFELRTNGAIVNRE 276

Query: 61  DYVFQVL 66
           DY F++L
Sbjct: 277 DYAFRIL 283

BLAST of MELO3C004883.jh1 vs. NCBI nr
Match: KAA0041132.1 (hypothetical protein E6C27_scaffold128G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 9.74e-11
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 3   TEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAIGK 58
           TE  GSLLAQ QVRSSL+ EIVR+QLEDS LQK+ EK+K+  E EFELR+D AI K
Sbjct: 932 TEDSGSLLAQFQVRSSLVTEIVRRQLEDSNLQKKFEKSKKGLEVEFELRTDGAIVK 987

BLAST of MELO3C004883.jh1 vs. NCBI nr
Match: TYK29668.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 2.43e-10
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 0

Query: 7   GSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAIGK 58
           GSL+AQ QVRSSL+AEI+R+Q E+S LQK+LEK+K+  E EFELR+DEAI K
Sbjct: 456 GSLIAQFQVRSSLVAEIIRRQSENSNLQKKLEKSKKGLEVEFELRTDEAIVK 507

BLAST of MELO3C004883.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SL18 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G00020 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.42e-11
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 3   TEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAIGK 58
           TE  GSLLAQ QVRSSL+ EIVR+Q EDS LQK+ EK+K+  E EFELR+DEAI K
Sbjct: 432 TEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDEAIVK 487

BLAST of MELO3C004883.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V0L5 (Retrotransposon protein, putative, Ty3-gypsy sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold7015G00010 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.44e-11
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 3   TEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAIGK 58
           TE  GSLLAQ QVRSSL+ EIVR+Q EDS LQK+ EK+K+  E EFELR+DEAI K
Sbjct: 808 TEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDEAIVK 863

BLAST of MELO3C004883.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CMM1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001700 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.14e-11
Identity = 41/67 (61.19%), Postives = 49/67 (73.13%), Query Frame = 0

Query: 1   MATEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAI-GKV 60
           M  E  GSLLAQ QVRSSL+AEIV +Q EDS LQK L K KQ +E EFELR++ AI  + 
Sbjct: 217 MTAESSGSLLAQFQVRSSLVAEIVGRQPEDSNLQKMLAKAKQGREAEFELRTNGAIVNRE 276

Query: 61  DYVFQVL 66
           DY F++L
Sbjct: 277 DYAFRIL 283

BLAST of MELO3C004883.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TCD9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00450 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.71e-11
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 3   TEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAIGK 58
           TE  GSLLAQ QVRSSL+ EIVR+QLEDS LQK+ EK+K+  E EFELR+D AI K
Sbjct: 932 TEDSGSLLAQFQVRSSLVTEIVRRQLEDSNLQKKFEKSKKGLEVEFELRTDGAIVK 987

BLAST of MELO3C004883.jh1 vs. ExPASy TrEMBL
Match: A0A5D3E1L7 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold64G00110 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.18e-10
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 0

Query: 7   GSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAIGK 58
           GSL+AQ QVRSSL+AEI+R+Q E+S LQK+LEK+K+  E EFELR+DEAI K
Sbjct: 456 GSLIAQFQVRSSLVAEIIRRQSENSNLQKKLEKSKKGLEVEFELRTDEAIVK 507

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0025165.17.07e-1169.64DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0060864.17.10e-1169.64retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa... [more]
KAA0054351.18.54e-1161.19reverse transcriptase [Cucumis melo var. makuwa] >TYK12388.1 reverse transcripta... [more]
KAA0041132.19.74e-1169.64hypothetical protein E6C27_scaffold128G00450 [Cucumis melo var. makuwa][more]
TYK29668.12.43e-1069.23DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SL183.42e-1169.64DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7V0L53.44e-1169.64Retrotransposon protein, putative, Ty3-gypsy sub-class OS=Cucumis melo var. maku... [more]
A0A5D3CMM14.14e-1161.19Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30... [more]
A0A5A7TCD94.71e-1169.64Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold12... [more]
A0A5D3E1L71.18e-1069.23DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004883.jh1.t1MELO3C004883.jh1.t1mRNA