MELO3C004879 (gene) Melon (DHL92) v4

Overview
NameMELO3C004879
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionFlagellar basal-body rod protein FlgB
Locationchr12: 7852474 .. 7852776 (-)
RNA-Seq ExpressionMELO3C004879
SyntenyMELO3C004879
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAAGATAAGAGTGATGATCAATCTAGAAAGAAAGAAACACCAACTAAGGCCAGTCCATCCAAAATAGATATTGAAATTGTACATTCTAACGACCCTTTGTCGGAACAAGCACAGTTGGATTCCCCATCACACAGCGAAGCTCTACCCGATGCGAGAGAAGTCTTTGGAACAAAGGGATGGAATTCTTTCAGCTTCAAGGGCAAAGAGGTGCCCATGAATGATGAAAGCATAGGATTTATGATGAACTTACCTTATGAAAGAAAGCAACAGACGAGCAAAGGCAAAAGAAGAAGCTAA

mRNA sequence

ATGGCCAAAGATAAGAGTGATGATCAATCTAGAAAGAAAGAAACACCAACTAAGGCCAGTCCATCCAAAATAGATATTGAAATTGTACATTCTAACGACCCTTTGTCGGAACAAGCACAGTTGGATTCCCCATCACACAGCGAAGCTCTACCCGATGCGAGAGAAGTCTTTGGAACAAAGGGATGGAATTCTTTCAGCTTCAAGGGCAAAGAGGTGCCCATGAATGATGAAAGCATAGGATTTATGATGAACTTACCTTATGAAAGAAAGCAACAGACGAGCAAAGGCAAAAGAAGAAGCTAA

Coding sequence (CDS)

ATGGCCAAAGATAAGAGTGATGATCAATCTAGAAAGAAAGAAACACCAACTAAGGCCAGTCCATCCAAAATAGATATTGAAATTGTACATTCTAACGACCCTTTGTCGGAACAAGCACAGTTGGATTCCCCATCACACAGCGAAGCTCTACCCGATGCGAGAGAAGTCTTTGGAACAAAGGGATGGAATTCTTTCAGCTTCAAGGGCAAAGAGGTGCCCATGAATGATGAAAGCATAGGATTTATGATGAACTTACCTTATGAAAGAAAGCAACAGACGAGCAAAGGCAAAAGAAGAAGCTAA

Protein sequence

MAKDKSDDQSRKKETPTKASPSKIDIEIVHSNDPLSEQAQLDSPSHSEALPDAREVFGTKGWNSFSFKGKEVPMNDESIGFMMNLPYERKQQTSKGKRRS
Homology
BLAST of MELO3C004879 vs. NCBI nr
Match: TYK20947.1 (hypothetical protein E5676_scaffold284G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 141.7 bits (356), Expect = 3.3e-30
Identity = 72/74 (97.30%), Postives = 72/74 (97.30%), Query Frame = 0

Query: 1  MAKDKSDDQSRKKETPTKASPSKIDIEIVHSNDPLSEQAQLDSPSHSEALPDAREVFGTK 60
          MAKDKSDDQSRKKETPTKASPSKIDIEIVHSNDPLSEQAQLDSPSHSEALPDAREVFGTK
Sbjct: 1  MAKDKSDDQSRKKETPTKASPSKIDIEIVHSNDPLSEQAQLDSPSHSEALPDAREVFGTK 60

Query: 61 GWNSFSFKGKEVPM 75
          GWNSFSFKGKE  M
Sbjct: 61 GWNSFSFKGKEFGM 74

BLAST of MELO3C004879 vs. NCBI nr
Match: KAA0041719.1 (hypothetical protein E6C27_scaffold67G00550 [Cucumis melo var. makuwa])

HSP 1 Score: 140.2 bits (352), Expect = 9.7e-30
Identity = 78/104 (75.00%), Postives = 84/104 (80.77%), Query Frame = 0

Query: 1   MAKDKSDDQSRKKETPTKASPSKIDIEIVHSNDPLSEQAQLDSPSHSEALPDAREVFGTK 60
           MAKDKSDDQSRKKETPTKASPSKIDIEIVHSNDPLSEQAQLDSPSHSEALPDAREVFGTK
Sbjct: 1   MAKDKSDDQSRKKETPTKASPSKIDIEIVHSNDPLSEQAQLDSPSHSEALPDAREVFGTK 60

Query: 61  GWNSFSFKG----KEVPMNDESIGFMMN---LPYERKQQTSKGK 98
           GWNSFSFKG    KE     E +G + N    P ++++ T K K
Sbjct: 61  GWNSFSFKGKEFCKEALKEIEDLGHLENDAPKPKKKRKVTMKKK 104

BLAST of MELO3C004879 vs. NCBI nr
Match: KAA0062631.1 (hypothetical protein E6C27_scaffold79G001420 [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 4.0e-15
Identity = 48/87 (55.17%), Postives = 62/87 (71.26%), Query Frame = 0

Query: 11  RKKETPTKASPSKIDIEIVHSNDPLSEQAQLDSPSHSEALPDAREVFGTKGWNSFSFKGK 70
           R  + P KA+P K D E+VHS+ P+SEQAQL S S ++ALP +REVFGTKGWN FSFK K
Sbjct: 37  RTIDIPVKANPFKRDTEVVHSHGPVSEQAQLASSSLNKALPSSREVFGTKGWNPFSFKSK 96

Query: 71  EVPMNDESIGFMMNLPYERKQQTSKGK 98
           EV M +E+I F+ NL  E   + ++ K
Sbjct: 97  EVLMTNENIDFITNLLMEESNKRAETK 123

BLAST of MELO3C004879 vs. NCBI nr
Match: TYK11051.1 (hypothetical protein E5676_scaffold73G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 4.8e-13
Identity = 42/85 (49.41%), Postives = 58/85 (68.24%), Query Frame = 0

Query: 1  MAKDKSDDQSRKKETPTKASPSKIDIEIVHSNDPLSEQAQLDSPSHSEALPDAREVFGTK 60
          M + K+ +QS KKE    A    +DI+IV S+ P+SEQ QL   SH++ALP +  VFGT+
Sbjct: 1  MIEKKASEQSEKKEASNTADQFAMDIKIVRSDGPVSEQRQLGCTSHNKALPSSSSVFGTE 60

Query: 61 GWNSFSFKGKEVPMNDESIGFMMNL 86
          GWN F+FKGK +PM D++I  M+ L
Sbjct: 61 GWNPFNFKGKVIPMIDDNIAMMLKL 85

BLAST of MELO3C004879 vs. NCBI nr
Match: TYK25880.1 (flagellar basal-body rod protein FlgB [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 9.5e-09
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = 0

Query: 1  MAKDKSDDQSRKKETPTKASPSKIDIEIVHSNDPLSEQAQLDSPSHSEALPDAREVFGTK 60
          M  +K+ DQS KK+  + A+ S+ DI+I+  +  L +QAQL S SH+E LP + EVFGT 
Sbjct: 1  MVGNKNVDQSEKKDALSIANSSERDIKIMCFDGTLLKQAQLASSSHNETLPISSEVFGTD 60

Query: 61 GWNSFSFKGKEVPMNDESI 80
          GWN F+  GKE+P+ DE+I
Sbjct: 61 GWNPFNLNGKEMPIIDENI 79

BLAST of MELO3C004879 vs. ExPASy TrEMBL
Match: A0A5D3DBE2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00950 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.6e-30
Identity = 72/74 (97.30%), Postives = 72/74 (97.30%), Query Frame = 0

Query: 1  MAKDKSDDQSRKKETPTKASPSKIDIEIVHSNDPLSEQAQLDSPSHSEALPDAREVFGTK 60
          MAKDKSDDQSRKKETPTKASPSKIDIEIVHSNDPLSEQAQLDSPSHSEALPDAREVFGTK
Sbjct: 1  MAKDKSDDQSRKKETPTKASPSKIDIEIVHSNDPLSEQAQLDSPSHSEALPDAREVFGTK 60

Query: 61 GWNSFSFKGKEVPM 75
          GWNSFSFKGKE  M
Sbjct: 61 GWNSFSFKGKEFGM 74

BLAST of MELO3C004879 vs. ExPASy TrEMBL
Match: A0A5A7TK20 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G00550 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.7e-30
Identity = 78/104 (75.00%), Postives = 84/104 (80.77%), Query Frame = 0

Query: 1   MAKDKSDDQSRKKETPTKASPSKIDIEIVHSNDPLSEQAQLDSPSHSEALPDAREVFGTK 60
           MAKDKSDDQSRKKETPTKASPSKIDIEIVHSNDPLSEQAQLDSPSHSEALPDAREVFGTK
Sbjct: 1   MAKDKSDDQSRKKETPTKASPSKIDIEIVHSNDPLSEQAQLDSPSHSEALPDAREVFGTK 60

Query: 61  GWNSFSFKG----KEVPMNDESIGFMMN---LPYERKQQTSKGK 98
           GWNSFSFKG    KE     E +G + N    P ++++ T K K
Sbjct: 61  GWNSFSFKGKEFCKEALKEIEDLGHLENDAPKPKKKRKVTMKKK 104

BLAST of MELO3C004879 vs. ExPASy TrEMBL
Match: A0A5A7VAE2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001420 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.9e-15
Identity = 48/87 (55.17%), Postives = 62/87 (71.26%), Query Frame = 0

Query: 11  RKKETPTKASPSKIDIEIVHSNDPLSEQAQLDSPSHSEALPDAREVFGTKGWNSFSFKGK 70
           R  + P KA+P K D E+VHS+ P+SEQAQL S S ++ALP +REVFGTKGWN FSFK K
Sbjct: 37  RTIDIPVKANPFKRDTEVVHSHGPVSEQAQLASSSLNKALPSSREVFGTKGWNPFSFKSK 96

Query: 71  EVPMNDESIGFMMNLPYERKQQTSKGK 98
           EV M +E+I F+ NL  E   + ++ K
Sbjct: 97  EVLMTNENIDFITNLLMEESNKRAETK 123

BLAST of MELO3C004879 vs. ExPASy TrEMBL
Match: A0A5D3CGX2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00340 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.3e-13
Identity = 42/85 (49.41%), Postives = 58/85 (68.24%), Query Frame = 0

Query: 1  MAKDKSDDQSRKKETPTKASPSKIDIEIVHSNDPLSEQAQLDSPSHSEALPDAREVFGTK 60
          M + K+ +QS KKE    A    +DI+IV S+ P+SEQ QL   SH++ALP +  VFGT+
Sbjct: 1  MIEKKASEQSEKKEASNTADQFAMDIKIVRSDGPVSEQRQLGCTSHNKALPSSSSVFGTE 60

Query: 61 GWNSFSFKGKEVPMNDESIGFMMNL 86
          GWN F+FKGK +PM D++I  M+ L
Sbjct: 61 GWNPFNFKGKVIPMIDDNIAMMLKL 85

BLAST of MELO3C004879 vs. ExPASy TrEMBL
Match: A0A5D3DRG2 (Flagellar basal-body rod protein FlgB OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G001040 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.6e-09
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = 0

Query: 1  MAKDKSDDQSRKKETPTKASPSKIDIEIVHSNDPLSEQAQLDSPSHSEALPDAREVFGTK 60
          M  +K+ DQS KK+  + A+ S+ DI+I+  +  L +QAQL S SH+E LP + EVFGT 
Sbjct: 1  MVGNKNVDQSEKKDALSIANSSERDIKIMCFDGTLLKQAQLASSSHNETLPISSEVFGTD 60

Query: 61 GWNSFSFKGKEVPMNDESI 80
          GWN F+  GKE+P+ DE+I
Sbjct: 61 GWNPFNLNGKEMPIIDENI 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
TYK20947.13.3e-3097.30hypothetical protein E5676_scaffold284G00950 [Cucumis melo var. makuwa][more]
KAA0041719.19.7e-3075.00hypothetical protein E6C27_scaffold67G00550 [Cucumis melo var. makuwa][more]
KAA0062631.14.0e-1555.17hypothetical protein E6C27_scaffold79G001420 [Cucumis melo var. makuwa][more]
TYK11051.14.8e-1349.41hypothetical protein E5676_scaffold73G00340 [Cucumis melo var. makuwa][more]
TYK25880.19.5e-0949.37flagellar basal-body rod protein FlgB [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A5D3DBE21.6e-3097.30Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TK204.7e-3075.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VAE21.9e-1555.17Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CGX22.3e-1349.41Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DRG24.6e-0949.37Flagellar basal-body rod protein FlgB OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004879.1MELO3C004879.1mRNA