Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACTTCTTTCTCTTTCTCTCCATTTCATGCAGACAAAGCCATTGTCACTTTCAAAGATCCAACACAAGCAACCCTTCTATGCAACAACAATGAATGGTCCACAATAGGAAGTTTTTATGTCAGATTTGAAAAATGGTCATTCAAAAAACACGCGGCCCCAATACTGGTTCCTAGCTACGGTGGATGGGTAAGCTTTAGAGGCATTCCTCTTTCAGCTTGGAAGACTGATACTTTCATCCAAATTGGGAATGCTTGTAGGGGCTTTCTGGATGTGGCTAAGGAAACAAAGACTAGAAAAAATCTTGTGGAAGCCAGAATCAAAATCAGATACAATTATTCTAGCTTCATACCAACAAATATAAGCATCAAAGACGACAACGGACACCTCTTCTTTGTTCAAGCAGTTACTCATGAAAATGGAAAGTGA
mRNA sequence
ATGGAAACTTCTTTCTCTTTCTCTCCATTTCATGCAGACAAAGCCATTGTCACTTTCAAAGATCCAACACAAGCAACCCTTCTATGCAACAACAATGAATGGTCCACAATAGGAAGTTTTTATGTCAGATTTGAAAAATGGTCATTCAAAAAACACGCGGCCCCAATACTGGTTCCTAGCTACGGTGGATGGGTAAGCTTTAGAGGCATTCCTCTTTCAGCTTGGAAGACTGATACTTTCATCCAAATTGGGAATGCTTGTAGGGGCTTTCTGGATGTGGCTAAGGAAACAAAGACTAGAAAAAATCTTGTGGAAGCCAGAATCAAAATCAGATACAATTATTCTAGCTTCATACCAACAAATATAAGCATCAAAGACGACAACGGACACCTCTTCTTTGTTCAAGCAGTTACTCATGAAAATGGAAAGTGA
Coding sequence (CDS)
ATGGAAACTTCTTTCTCTTTCTCTCCATTTCATGCAGACAAAGCCATTGTCACTTTCAAAGATCCAACACAAGCAACCCTTCTATGCAACAACAATGAATGGTCCACAATAGGAAGTTTTTATGTCAGATTTGAAAAATGGTCATTCAAAAAACACGCGGCCCCAATACTGGTTCCTAGCTACGGTGGATGGGTAAGCTTTAGAGGCATTCCTCTTTCAGCTTGGAAGACTGATACTTTCATCCAAATTGGGAATGCTTGTAGGGGCTTTCTGGATGTGGCTAAGGAAACAAAGACTAGAAAAAATCTTGTGGAAGCCAGAATCAAAATCAGATACAATTATTCTAGCTTCATACCAACAAATATAAGCATCAAAGACGACAACGGACACCTCTTCTTTGTTCAAGCAGTTACTCATGAAAATGGAAAGTGA
Protein sequence
METSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSYGGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTNISIKDDNGHLFFVQAVTHENGK
Homology
BLAST of MELO3C004802 vs. NCBI nr
Match:
KAA0065895.1 (hypothetical protein E6C27_scaffold538G00730 [Cucumis melo var. makuwa] >TYK15122.1 hypothetical protein E5676_scaffold259G00540 [Cucumis melo var. makuwa])
HSP 1 Score: 303.9 bits (777), Expect = 7.3e-79
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
Query: 1 METSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPS 60
METSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPS
Sbjct: 1 METSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPS 60
Query: 61 YGGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPT 120
YGGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPT
Sbjct: 61 YGGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPT 120
Query: 121 NISIKDDNGHLFFVQAVTHENGK 144
NISIKDDNGHLFFVQAVTHENGK
Sbjct: 121 NISIKDDNGHLFFVQAVTHENGK 143
BLAST of MELO3C004802 vs. NCBI nr
Match:
TYJ99315.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 186.4 bits (472), Expect = 1.7e-43
Identity = 83/142 (58.45%), Postives = 102/142 (71.83%), Query Frame = 0
Query: 2 ETSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSY 61
E SF+++ FHA+KA+V F A LLC N WST+G + VRFEKWS HA P L+PSY
Sbjct: 283 EESFTYNAFHAEKALVHFSSNIPANLLCQNKGWSTVGKYSVRFEKWSPVYHATPKLIPSY 342
Query: 62 GGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTN 121
GGW +FRGIPL W TF QIG AC G + VA+ET++ KNL+EARIK+RYNYS F+P N
Sbjct: 343 GGWTTFRGIPLHLWNMMTFQQIGKACEGLIKVAEETRSAKNLIEARIKVRYNYSGFLPAN 402
Query: 122 ISIKDDNGHLFFVQAVTHENGK 144
+ I D+ G+ FFVQ VTH GK
Sbjct: 403 VRIFDNEGNKFFVQVVTHPEGK 424
BLAST of MELO3C004802 vs. NCBI nr
Match:
TYK23598.1 (hypothetical protein E5676_scaffold500G001100 [Cucumis melo var. makuwa])
HSP 1 Score: 184.1 bits (466), Expect = 8.4e-43
Identity = 81/142 (57.04%), Postives = 101/142 (71.13%), Query Frame = 0
Query: 2 ETSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSY 61
E SF+++ FHA+KA+V F A LLC N W+T+G + VRFEKWS HA P L+PSY
Sbjct: 227 EESFTYNAFHAEKALVHFSSNIPANLLCQNKGWTTVGKYSVRFEKWSSAYHATPKLIPSY 286
Query: 62 GGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTN 121
GGW +FRGIPL W TF QIG AC G + VA+ETK+ KNL+EARIK+RYNYS F+P N
Sbjct: 287 GGWTTFRGIPLHLWNMTTFQQIGKACGGLIKVAEETKSAKNLIEARIKVRYNYSGFLPAN 346
Query: 122 ISIKDDNGHLFFVQAVTHENGK 144
+ I D+ G+ F +Q VTH GK
Sbjct: 347 VRIFDNEGNKFSIQVVTHPEGK 368
BLAST of MELO3C004802 vs. NCBI nr
Match:
KAA0037444.1 (hypothetical protein E6C27_scaffold277G00300 [Cucumis melo var. makuwa] >TYK01918.1 hypothetical protein E5676_scaffold808G00040 [Cucumis melo var. makuwa])
HSP 1 Score: 183.7 bits (465), Expect = 1.1e-42
Identity = 81/142 (57.04%), Postives = 102/142 (71.83%), Query Frame = 0
Query: 2 ETSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSY 61
E SF+++ FHA+KA+V F A LLC N W+T+G + VRFEKWS HA P L+PSY
Sbjct: 229 EESFTYNAFHAEKALVHFSSNIPANLLCQNKGWTTVGKYSVRFEKWSSAYHATPKLIPSY 288
Query: 62 GGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTN 121
GGW +FRGIPL W TF QIG AC G + VA+ET++ KNL+EARIK+RYNYS+F+P N
Sbjct: 289 GGWTTFRGIPLHLWNMTTFQQIGKACGGLIKVAEETRSAKNLIEARIKVRYNYSAFLPAN 348
Query: 122 ISIKDDNGHLFFVQAVTHENGK 144
+ I D+ G+ F VQ VTH GK
Sbjct: 349 VRIFDNEGNKFSVQVVTHPEGK 370
BLAST of MELO3C004802 vs. NCBI nr
Match:
KAA0050816.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK08529.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 182.6 bits (462), Expect = 2.4e-42
Identity = 80/142 (56.34%), Postives = 100/142 (70.42%), Query Frame = 0
Query: 2 ETSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSY 61
E SF+++ FHA+KA+V F A LLC N W+T+G + VRFEKW HA+P L+PSY
Sbjct: 143 EESFTYNAFHAEKALVHFNSNVPANLLCQNKGWTTVGKYMVRFEKWDPASHASPKLIPSY 202
Query: 62 GGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTN 121
GGW +FRGIPL W TF QIG AC G L VA+ETKT +NL+EA++KIRYNYS F+P
Sbjct: 203 GGWTTFRGIPLHLWNMKTFQQIGKACGGLLKVAEETKTARNLIEAKLKIRYNYSGFLPAY 262
Query: 122 ISIKDDNGHLFFVQAVTHENGK 144
+ I D G+ F VQA+TH GK
Sbjct: 263 VKIFDQEGNKFVVQAITHSEGK 284
BLAST of MELO3C004802 vs. ExPASy TrEMBL
Match:
A0A5D3CUI3 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00540 PE=4 SV=1)
HSP 1 Score: 303.9 bits (777), Expect = 3.5e-79
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
Query: 1 METSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPS 60
METSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPS
Sbjct: 1 METSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPS 60
Query: 61 YGGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPT 120
YGGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPT
Sbjct: 61 YGGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPT 120
Query: 121 NISIKDDNGHLFFVQAVTHENGK 144
NISIKDDNGHLFFVQAVTHENGK
Sbjct: 121 NISIKDDNGHLFFVQAVTHENGK 143
BLAST of MELO3C004802 vs. ExPASy TrEMBL
Match:
A0A5D3BLV7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005290 PE=4 SV=1)
HSP 1 Score: 186.4 bits (472), Expect = 8.2e-44
Identity = 83/142 (58.45%), Postives = 102/142 (71.83%), Query Frame = 0
Query: 2 ETSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSY 61
E SF+++ FHA+KA+V F A LLC N WST+G + VRFEKWS HA P L+PSY
Sbjct: 283 EESFTYNAFHAEKALVHFSSNIPANLLCQNKGWSTVGKYSVRFEKWSPVYHATPKLIPSY 342
Query: 62 GGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTN 121
GGW +FRGIPL W TF QIG AC G + VA+ET++ KNL+EARIK+RYNYS F+P N
Sbjct: 343 GGWTTFRGIPLHLWNMMTFQQIGKACEGLIKVAEETRSAKNLIEARIKVRYNYSGFLPAN 402
Query: 122 ISIKDDNGHLFFVQAVTHENGK 144
+ I D+ G+ FFVQ VTH GK
Sbjct: 403 VRIFDNEGNKFFVQVVTHPEGK 424
BLAST of MELO3C004802 vs. ExPASy TrEMBL
Match:
A0A5D3DJE1 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001100 PE=4 SV=1)
HSP 1 Score: 184.1 bits (466), Expect = 4.1e-43
Identity = 81/142 (57.04%), Postives = 101/142 (71.13%), Query Frame = 0
Query: 2 ETSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSY 61
E SF+++ FHA+KA+V F A LLC N W+T+G + VRFEKWS HA P L+PSY
Sbjct: 227 EESFTYNAFHAEKALVHFSSNIPANLLCQNKGWTTVGKYSVRFEKWSSAYHATPKLIPSY 286
Query: 62 GGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTN 121
GGW +FRGIPL W TF QIG AC G + VA+ETK+ KNL+EARIK+RYNYS F+P N
Sbjct: 287 GGWTTFRGIPLHLWNMTTFQQIGKACGGLIKVAEETKSAKNLIEARIKVRYNYSGFLPAN 346
Query: 122 ISIKDDNGHLFFVQAVTHENGK 144
+ I D+ G+ F +Q VTH GK
Sbjct: 347 VRIFDNEGNKFSIQVVTHPEGK 368
BLAST of MELO3C004802 vs. ExPASy TrEMBL
Match:
A0A5D3BSE0 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00040 PE=4 SV=1)
HSP 1 Score: 183.7 bits (465), Expect = 5.3e-43
Identity = 81/142 (57.04%), Postives = 102/142 (71.83%), Query Frame = 0
Query: 2 ETSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSY 61
E SF+++ FHA+KA+V F A LLC N W+T+G + VRFEKWS HA P L+PSY
Sbjct: 229 EESFTYNAFHAEKALVHFSSNIPANLLCQNKGWTTVGKYSVRFEKWSSAYHATPKLIPSY 288
Query: 62 GGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTN 121
GGW +FRGIPL W TF QIG AC G + VA+ET++ KNL+EARIK+RYNYS+F+P N
Sbjct: 289 GGWTTFRGIPLHLWNMTTFQQIGKACGGLIKVAEETRSAKNLIEARIKVRYNYSAFLPAN 348
Query: 122 ISIKDDNGHLFFVQAVTHENGK 144
+ I D+ G+ F VQ VTH GK
Sbjct: 349 VRIFDNEGNKFSVQVVTHPEGK 370
BLAST of MELO3C004802 vs. ExPASy TrEMBL
Match:
A0A5A7U9E5 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00670 PE=4 SV=1)
HSP 1 Score: 182.6 bits (462), Expect = 1.2e-42
Identity = 80/142 (56.34%), Postives = 100/142 (70.42%), Query Frame = 0
Query: 2 ETSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSY 61
E SF+++ FHA+KA+V F A LLC N W+T+G + VRFEKW HA+P L+PSY
Sbjct: 143 EESFTYNAFHAEKALVHFNSNVPANLLCQNKGWTTVGKYMVRFEKWDPASHASPKLIPSY 202
Query: 62 GGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTN 121
GGW +FRGIPL W TF QIG AC G L VA+ETKT +NL+EA++KIRYNYS F+P
Sbjct: 203 GGWTTFRGIPLHLWNMKTFQQIGKACGGLLKVAEETKTARNLIEAKLKIRYNYSGFLPAY 262
Query: 122 ISIKDDNGHLFFVQAVTHENGK 144
+ I D G+ F VQA+TH GK
Sbjct: 263 VKIFDQEGNKFVVQAITHSEGK 284
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAA0065895.1 | 7.3e-79 | 100.00 | hypothetical protein E6C27_scaffold538G00730 [Cucumis melo var. makuwa] >TYK1512... | [more] |
| TYJ99315.1 | 1.7e-43 | 58.45 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
| TYK23598.1 | 8.4e-43 | 57.04 | hypothetical protein E5676_scaffold500G001100 [Cucumis melo var. makuwa] | [more] |
| KAA0037444.1 | 1.1e-42 | 57.04 | hypothetical protein E6C27_scaffold277G00300 [Cucumis melo var. makuwa] >TYK0191... | [more] |
| KAA0050816.1 | 2.4e-42 | 56.34 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK085... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3CUI3 | 3.5e-79 | 100.00 | DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5D3BLV7 | 8.2e-44 | 58.45 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A5D3DJE1 | 4.1e-43 | 57.04 | DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5D3BSE0 | 5.3e-43 | 57.04 | DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5A7U9E5 | 1.2e-42 | 56.34 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
