MELO3C004748.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C004748.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionCollagen triple helix repeat
Locationchr12: 11128743 .. 11129881 (-)
RNA-Seq ExpressionMELO3C004748.jh1
SyntenyMELO3C004748.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
AACACTGAATAATTTTCACTCATAGTAATTTTTTATTCAAATATACGACATTTTAAAGTTACATAATAGGAGCTTACATGATTGATTAGAAAGAACTTGAAGCAAATAAAATTCCACCAGGAAACCTCATGCTTGAAAATTCGAGTCTAGAGAAGCTACACTTCTTTGATAATGCACACAAGTATGTTGTCAAAGGTGGAATACTGAGGGGGAGACAAGTTGGATTCGAGGAAATATAAAGAGTGAATGGATAACAGTATTTGGTGCATACTAGGGAGTGGAAGGAATGCTCGGGATAACTGGAATATTAGGAAGGGGAGGAAAATCGGTGGATAGAATAGAAGGAACGTTGGGGATAGTAACAGGTGGAATATTAGAGACAAGTGGAATCGAAGGCAATGAAGGAACGTCCGGGAAAGTAACGGGTGGAATATTAGAGACAAGTGGAATTGAAGGCAATAAAGGAATGTCTGGGATAGGAACGTCCGGGAAAGTAACAGGTGGAATATTAGGGATGAGTGGAATCGAAGGTAATGAAGGAACGTTCGGGATAGTAACGGATGGAATATTAGGGACGAGTGGAATCGAAAGCAAAGAAGGAACGTTCGGGATAGGAATGTTTGGAATAGTAACAGGTGGAGTATTAGGCACGAATGGAATCGAAGGCAATAAAGGAACGTTTGGGATAGTAACCGGTGGAATGTTAGGGAGGAGAGGTGAACTGATTGATGGAACAGAAGGCAATGATTGTTGGAGATGACGTCCTGCTTCACTCCCTTTGATGGTTGTTGATGATAGAGTTATAAATACAAGAACAAGGATTAAGAAGCTTTTATCGGAAGCCATGATAGATAAATGTTTACTTCAACTTACAATGATATCGTAAACATACGTTTGGGGGTTTTTATATCCAAGGTTATGCATCCATTGGTAGCTAGGCTTAATTGGCGGTCCACTATTTGCTAGCATTATTGATTATTATCATTATTATGATTACATTTTTTTTTTAATTTAAGAAATATTGTTTGAAACTTTTACAATTTCTTTTTTGTTGGTACATTTTTTTATAATTTAAGAAAACATTGTTTTGTACTTTAGCTATCTATTATTTTATATTTTAGTGAAATTTCAAATGTCAT

mRNA sequence

AACACTGAATAATTTTCACTCATAGTAATTTTTTATTCAAATATACGACATTTTAAAGTTACATAATAGGAGCTTACATGATTGATTAGAAAGAACTTGAAGCAAATAAAATTCCACCAGGAAACCTCATGCTTGAAAATTCGAGTCTAGAGAAGCTACACTTCTTTGATAATGCACACAAGTATGTTGTCAAAGGTGGAATACTGAGGGGGAGACAAGTTGGATTCGAGGAAATATAAAGAGTGAATGGATAACAGTATTTGGTGCATACTAGGGAGTGGAAGGAATGCTCGGGATAACTGGAATATTAGGAAGGGGAGGAAAATCGGTGGATAGAATAGAAGGAACGTTGGGGATAGTAACAGGTGGAATATTAGAGACAAGTGGAATCGAAGGCAATGAAGGAACGTCCGGGAAAGTAACGGGTGGAATATTAGAGACAAGTGGAATTGAAGGCAATAAAGGAATGTCTGGGATAGGAACGTCCGGGAAAGTAACAGGTGGAATATTAGGGATGAGTGGAATCGAAGGTAATGAAGGAACGTTCGGGATAGTAACGGATGGAATATTAGGGACGAGTGGAATCGAAAGCAAAGAAGGAACGTTCGGGATAGGAATGTTTGGAATAGTAACAGGTGGAGTATTAGGCACGAATGGAATCGAAGGCAATAAAGGAACGTTTGGGATAGTAACCGGTGGAATGTTAGGGAGGAGAGGTGAACTGATTGATGGAACAGAAGGCAATGATTGTTGGAGATGACGTCCTGCTTCACTCCCTTTGATGGTTGTTGATGATAGAGTTATAAATACAAGAACAAGGATTAAGAAGCTTTTATCGGAAGCCATGATAGATAAATGTTTACTTCAACTTACAATGATATCGTAAACATACGTTTGGGGGTTTTTATATCCAAGGTTATGCATCCATTGGTAGCTAGGCTTAATTGGCGGTCCACTATTTGCTAGCATTATTGATTATTATCATTATTATGATTACATTTTTTTTTTAATTTAAGAAATATTGTTTGAAACTTTTACAATTTCTTTTTTGTTGGTACATTTTTTTATAATTTAAGAAAACATTGTTTTGTACTTTAGCTATCTATTATTTTATATTTTAGTGAAATTTCAAATGTCAT

Coding sequence (CDS)

ATGCTCGGGATAACTGGAATATTAGGAAGGGGAGGAAAATCGGTGGATAGAATAGAAGGAACGTTGGGGATAGTAACAGGTGGAATATTAGAGACAAGTGGAATCGAAGGCAATGAAGGAACGTCCGGGAAAGTAACGGGTGGAATATTAGAGACAAGTGGAATTGAAGGCAATAAAGGAATGTCTGGGATAGGAACGTCCGGGAAAGTAACAGGTGGAATATTAGGGATGAGTGGAATCGAAGGTAATGAAGGAACGTTCGGGATAGTAACGGATGGAATATTAGGGACGAGTGGAATCGAAAGCAAAGAAGGAACGTTCGGGATAGGAATGTTTGGAATAGTAACAGGTGGAGTATTAGGCACGAATGGAATCGAAGGCAATAAAGGAACGTTTGGGATAGTAACCGGTGGAATGTTAGGGAGGAGAGGTGAACTGATTGATGGAACAGAAGGCAATGATTGTTGGAGATGA

Protein sequence

MLGITGILGRGGKSVDRIEGTLGIVTGGILETSGIEGNEGTSGKVTGGILETSGIEGNKGMSGIGTSGKVTGGILGMSGIEGNEGTFGIVTDGILGTSGIESKEGTFGIGMFGIVTGGVLGTNGIEGNKGTFGIVTGGMLGRRGELIDGTEGNDCWR
Homology
BLAST of MELO3C004748.jh1 vs. NCBI nr
Match: XP_031739036.1 (collagen alpha-1(IV) chain [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 7.31e-21
Identity = 88/158 (55.70%), Postives = 98/158 (62.03%), Query Frame = 0

Query: 1   MLGI--TGILGRGGKSVDRIEGTLG-IVTGG-ILETSGIEGNEGTSGKVTGGILETSGIE 60
           M GI  TGILGRGGKSVD IEGT+G IV GG IL  +GIE NEGT G + GG L T G E
Sbjct: 1   MFGILGTGILGRGGKSVDGIEGTIGGIVVGGTILGMNGIEDNEGTLG-IMGGRLGTIGGE 60

Query: 61  GNKGMSGIGTSGKVTGGILGMSGIEGNEGTFGIVTDGILGTSGIESKEGTFGIGMFGIVT 120
           GN+G  GI       GG LGM G E NEG  GI+  G LGT G +  EGT GI       
Sbjct: 61  GNEGTPGI------MGGRLGMVGSECNEGILGIM-GGRLGTIGGKGNEGTLGI------M 120

Query: 121 GGVLGTNGIEGNKGTFGIVTGGMLGRRGELIDGTEGND 154
           GG LGT G EGN+GT GI    M GR G +  G+EGN+
Sbjct: 121 GGRLGTIGSEGNEGTPGI----MGGRLGTI--GSEGNE 138

BLAST of MELO3C004748.jh1 vs. NCBI nr
Match: CAB4159571.1 (Collagen triple helix repeat, partial [uncultured Caudovirales phage])

HSP 1 Score: 68.9 bits (167), Expect = 3.70e-10
Identity = 69/152 (45.39%), Postives = 81/152 (53.29%), Query Frame = 0

Query: 12  GKSVDRIEGTLGIVTGGILETSGIEGNEGTSGKVTGGILETSGIEGNKGMSGI-GTSGKV 71
           G       GT GI + G   TSGI+G+ GTSG    G   TSGI+G+ G SGI GTSG  
Sbjct: 58  GSGTSGSSGTSGIGSSGTSGTSGIDGSSGTSG--IDGSSGTSGIDGSSGTSGIDGTSG-- 117

Query: 72  TGGILGMSGIEGNEGTFGIV----TDGILGTSGIESKEGTFGI----GMFGIVTGGVLGT 131
           T GI G SG  G +G+ G      TDG  G+SGI+   GT G+    G  GI   G  GT
Sbjct: 118 TSGIDGTSGTSGTDGSSGSSGTSGTDGSSGSSGIDGSSGTSGVDGSSGTSGID--GTSGT 177

Query: 132 NGIEGNKGTFGIVTGGMLGRRGELIDGTEGND 154
           +GI+G  GT G  T G  G  G   DGT G D
Sbjct: 178 SGIDGTSGTSG--TSGTSGTSG--TDGTSGTD 199

BLAST of MELO3C004748.jh1 vs. NCBI nr
Match: NBR25198.1 (calcium-binding protein [Micrococcales bacterium])

HSP 1 Score: 67.8 bits (164), Expect = 8.62e-10
Identity = 73/164 (44.51%), Postives = 89/164 (54.27%), Query Frame = 0

Query: 3   GITGILGRGGKSVDRIEGTLGIVTGGILETSGIEGNEGTSGKVTGGILETSGIEGNKGMS 62
           G  G  G  G S   ++GT G  T GI  TSG  G +GTSG  T GI  TSG++G  G S
Sbjct: 50  GTNGFDGTSGTS--GLDGTSG--TSGIDGTSGTNGFDGTSG--TSGIDGTSGLDGTSGTS 109

Query: 63  GI-GTSGKV----TGGILGMSGIEGNEGTFGIV-TDGILGTSGIESKEGTFGI-GMFGIV 122
           G+ GTSG      T G  G+SG+ G  GT G+  T GI GTSG    +GT GI G  GI 
Sbjct: 110 GLDGTSGTSGIDGTSGSSGLSGVNGTSGTSGLDGTSGIDGTSGTSGLDGTSGIDGTSGID 169

Query: 123 ----TGGVLGTNGIEGNKGTFGIV-TGGMLGRRGELIDGTEGND 154
               T G+ GT+G +G  GT G+  T G  G  G  ++GT G D
Sbjct: 170 GTSGTSGIDGTSGFDGTSGTSGLDGTSGTSGLSG--VNGTSGTD 205

BLAST of MELO3C004748.jh1 vs. NCBI nr
Match: TMW66081.1 (hypothetical protein Poli38472_003846 [Pythium oligandrum])

HSP 1 Score: 65.9 bits (159), Expect = 3.69e-09
Identity = 60/153 (39.22%), Postives = 85/153 (55.56%), Query Frame = 0

Query: 3   GITGILGR-------GGKSVDRIEGTLGIV-TGGILETSGIEGNEGTSGKV-TGGILETS 62
           G+TG++G        GG  V  + G +G++ TGG+L  SG+ G  G  G + TGG+L  S
Sbjct: 177 GVTGVVGPLSTVGVLGGSGVTGVTGVVGLLSTGGVLGGSGVTGVTGVVGPLSTGGVLGGS 236

Query: 63  GIEGNKGMSGIGTSGKVTGGILGMSGIEGNEGTFG-IVTDGILGTSGIESKEGTFGIGMF 122
           G+ G  G+ G+      TGG+LG SG+    G  G + T G+LG SG+    G  G    
Sbjct: 237 GVTGVTGVVGL----LSTGGVLGGSGVTDVTGVVGPLSTVGVLGGSGVTGVTGVVGP--- 296

Query: 123 GIVTGGVLGTNGIEGNKGTFGIV-TGGMLGRRG 144
            + TGGVLG +G+ G  G  G++ TGG+LG  G
Sbjct: 297 -LSTGGVLGGSGVTGVTGVVGLLSTGGVLGGSG 321

BLAST of MELO3C004748.jh1 vs. NCBI nr
Match: CAB4124396.1 (Collagen triple helix repeat, partial [uncultured Caudovirales phage])

HSP 1 Score: 65.1 bits (157), Expect = 8.13e-09
Identity = 54/141 (38.30%), Postives = 73/141 (51.77%), Query Frame = 0

Query: 19  EGTLGIVTGGILETSGIEGNEGTSGKVTGGILETSGIEGNKGMSGIGTSGKVTGGILGMS 78
           +GT+G  T G + + G+ G +GTSG  T G + + G  G++G  G GT G V     G  
Sbjct: 686 QGTIGTGTQGTVGSQGLSGTQGTSG--TQGSIGSQGTIGSQGTVGAGTQGTV-----GSQ 745

Query: 79  GIEGNEGTFGIVTDGILGTSGIESKEGTFGIGMFGIV-------TGGVLGTNGIEGNKGT 138
           G+ G +GT G    G+ GT G    +GT G G  G V       T G LGT G  G +GT
Sbjct: 746 GLAGTQGTVG--AQGLAGTQGALGTQGTIGTGTQGTVGAQGLAGTQGALGTQGTVGAQGT 805

Query: 139 FGIVTGGMLGRRGELIDGTEG 152
            G  T G +G +G +  GT+G
Sbjct: 806 IGTGTQGTIGSQGTIGTGTQG 817

BLAST of MELO3C004748.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LY65 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G153560 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 7.26e-21
Identity = 86/158 (54.43%), Postives = 99/158 (62.66%), Query Frame = 0

Query: 1   MLGI--TGILGRGGKSVDRIEGTLG-IVTGG-ILETSGIEGNEGTSGKVTGGILETSGIE 60
           M GI  TGILGRGGKSVD IEGT+G IV GG IL  +GIE NEGT G + GG L T G E
Sbjct: 1   MFGILGTGILGRGGKSVDGIEGTIGGIVVGGTILGMNGIEDNEGTLG-IMGGRLGTIGSE 60

Query: 61  GNKGMSGIGTSGKVTGGILGMSGIEGNEGTFGIVTDGILGTSGIESKEGTFGIGMFGIVT 120
           GN+G  G      V GG LG  G EGNEGT G++  G LGT G +  EGT GI       
Sbjct: 61  GNEGTPG------VMGGRLGTIGSEGNEGTPGVM-GGRLGTIGGKGNEGTPGI------M 120

Query: 121 GGVLGTNGIEGNKGTFGIVTG--GMLGRRGELIDGTEG 152
           GG LGT G EGN+GT G++ G  G +G +G   +GT G
Sbjct: 121 GGRLGTIGSEGNEGTPGVMGGRLGTIGGKGN--EGTPG 142

BLAST of MELO3C004748.jh1 vs. ExPASy TrEMBL
Match: A0A0F8AK28 (Spectrin beta chain, brain 1 OS=Larimichthys crocea OX=215358 GN=EH28_08933 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.37e-10
Identity = 71/144 (49.31%), Postives = 87/144 (60.42%), Query Frame = 0

Query: 2    LGITGILGRGGKSVDRIEGTLGIVTGGILETSGIEGNEGTSGKVTGGILETSGIEGNKGM 61
            +G  GI+   G  ++ IEGT+G V  GI+ T GIEG EGT G V  GI+ T GIEG +G 
Sbjct: 2302 VGTVGIVSTVG--IEGIEGTVGTV--GIVSTVGIEGIEGTVGTV--GIVSTVGIEGIEGT 2361

Query: 62   SGIGTSGKV-TGGILGMSGIEGNEGTFGIV-------TDGILGTSGIESKEGTFG-IGMF 121
              +GT G V T GI+G+ GIEG  GT G V       T GI+G  GIE   GT G +G+ 
Sbjct: 2362 --VGTVGIVSTVGIVGIVGIEGIVGTVGTVGIEGIVSTVGIVGIVGIEGIVGTVGTVGIE 2421

Query: 122  GIV-TGGVLGTNGIEGNKGTFGIV 135
            GIV T G++G  GIEG  GT G V
Sbjct: 2422 GIVSTVGIVGIVGIEGIVGTVGTV 2437

BLAST of MELO3C004748.jh1 vs. ExPASy TrEMBL
Match: A0A6J5NQC0 (Collagen triple helix repeat (Fragment) OS=uncultured Caudovirales phage OX=2100421 GN=UFOVP699_307 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.79e-10
Identity = 69/152 (45.39%), Postives = 81/152 (53.29%), Query Frame = 0

Query: 12  GKSVDRIEGTLGIVTGGILETSGIEGNEGTSGKVTGGILETSGIEGNKGMSGI-GTSGKV 71
           G       GT GI + G   TSGI+G+ GTSG    G   TSGI+G+ G SGI GTSG  
Sbjct: 58  GSGTSGSSGTSGIGSSGTSGTSGIDGSSGTSG--IDGSSGTSGIDGSSGTSGIDGTSG-- 117

Query: 72  TGGILGMSGIEGNEGTFGIV----TDGILGTSGIESKEGTFGI----GMFGIVTGGVLGT 131
           T GI G SG  G +G+ G      TDG  G+SGI+   GT G+    G  GI   G  GT
Sbjct: 118 TSGIDGTSGTSGTDGSSGSSGTSGTDGSSGSSGIDGSSGTSGVDGSSGTSGID--GTSGT 177

Query: 132 NGIEGNKGTFGIVTGGMLGRRGELIDGTEGND 154
           +GI+G  GT G  T G  G  G   DGT G D
Sbjct: 178 SGIDGTSGTSG--TSGTSGTSG--TDGTSGTD 199

BLAST of MELO3C004748.jh1 vs. ExPASy TrEMBL
Match: A0A6J5KT28 (Collagen triple helix repeat OS=uncultured Caudovirales phage OX=2100421 GN=UFOVP49_234 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.94e-09
Identity = 54/141 (38.30%), Postives = 73/141 (51.77%), Query Frame = 0

Query: 19  EGTLGIVTGGILETSGIEGNEGTSGKVTGGILETSGIEGNKGMSGIGTSGKVTGGILGMS 78
           +GT+G  T G + + G+ G +GTSG  T G + + G  G++G  G GT G V     G  
Sbjct: 686 QGTIGTGTQGTVGSQGLSGTQGTSG--TQGSIGSQGTIGSQGTVGAGTQGTV-----GSQ 745

Query: 79  GIEGNEGTFGIVTDGILGTSGIESKEGTFGIGMFGIV-------TGGVLGTNGIEGNKGT 138
           G+ G +GT G    G+ GT G    +GT G G  G V       T G LGT G  G +GT
Sbjct: 746 GLAGTQGTVG--AQGLAGTQGALGTQGTIGTGTQGTVGAQGLAGTQGALGTQGTVGAQGT 805

Query: 139 FGIVTGGMLGRRGELIDGTEG 152
            G  T G +G +G +  GT+G
Sbjct: 806 IGTGTQGTIGSQGTIGTGTQG 817

BLAST of MELO3C004748.jh1 vs. ExPASy TrEMBL
Match: F5UHS5 (Uncharacterized protein OS=Microcoleus vaginatus FGP-2 OX=756067 GN=MicvaDRAFT_2771 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.95e-07
Identity = 63/158 (39.87%), Postives = 68/158 (43.04%), Query Frame = 0

Query: 3   GITGILGRGGKSVDRIEGTLGIVTGGILETSGIE--GNEGTSGKVTGGILETSGIE--GN 62
           G TG  G  G +     GT G  T G   TSG +  G  GTSG  T G   TSG +  G 
Sbjct: 101 GTTGTSGTSGTTGTGTSGTTG--TTGTTGTSGTDTTGTSGTSGTDTTGTSGTSGTDTTGT 160

Query: 63  KGMSGIGTSGKV----TGGILGMSGIEGNEGTFGIVTDGILGTSGIESKEGTFGIGMFGI 122
            G SG GT+G      T G  G SG  G  GT G  T G  GT+G     GT   G  G 
Sbjct: 161 SGTSGTGTTGTSGTTGTSGTTGTSGTTGTSGTTGTGTSGTTGTTGTTGTSGT--TGTSGT 220

Query: 123 VTGGVLGTNGIEGNKGTFGIVTGGMLGRRGELIDGTEG 152
              G  GT G  G  GT G  T G  G  G    GT G
Sbjct: 221 SGTGTTGTTGTTGTSGTTGTGTSGTSGTTGTGTTGTTG 254

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_031739036.17.31e-2155.70collagen alpha-1(IV) chain [Cucumis sativus][more]
CAB4159571.13.70e-1045.39Collagen triple helix repeat, partial [uncultured Caudovirales phage][more]
NBR25198.18.62e-1044.51calcium-binding protein [Micrococcales bacterium][more]
TMW66081.13.69e-0939.22hypothetical protein Poli38472_003846 [Pythium oligandrum][more]
CAB4124396.18.13e-0938.30Collagen triple helix repeat, partial [uncultured Caudovirales phage][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LY657.26e-2154.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G153560 PE=4 SV=1[more]
A0A0F8AK281.37e-1049.31Spectrin beta chain, brain 1 OS=Larimichthys crocea OX=215358 GN=EH28_08933 PE=3... [more]
A0A6J5NQC01.79e-1045.39Collagen triple helix repeat (Fragment) OS=uncultured Caudovirales phage OX=2100... [more]
A0A6J5KT283.94e-0938.30Collagen triple helix repeat OS=uncultured Caudovirales phage OX=2100421 GN=UFOV... [more]
F5UHS51.95e-0739.87Uncharacterized protein OS=Microcoleus vaginatus FGP-2 OX=756067 GN=MicvaDRAFT_2... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004748.jh1.t1MELO3C004748.jh1.t1mRNA