MELO3C004705 (gene) Melon (DHL92) v4

Overview
NameMELO3C004705
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionTranscription factor bHLH35
Locationchr12: 11752804 .. 11752965 (+)
RNA-Seq ExpressionMELO3C004705
SyntenyMELO3C004705
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCAATGAATGGAGTATCAGAAACATTGTAAAAACACTACAAGAAGAAGGGGATCTACCATCGCAGAGATACGTTGGTAGAAGCCAGAGATGCGTTGGAAAAGGCTACACTGATGCAGAAATGGATGTTGGTAAGGACATTGTGAGACAAGCATCGTGA

mRNA sequence

ATGACCAATGAATGGAGTATCAGAAACATTGTAAAAACACTACAAGAAGAAGGGGATCTACCATCGCAGAGATACGTTGGTAGAAGCCAGAGATGCGTTGGAAAAGGCTACACTGATGCAGAAATGGATGTTGGTAAGGACATTGTGAGACAAGCATCGTGA

Coding sequence (CDS)

ATGACCAATGAATGGAGTATCAGAAACATTGTAAAAACACTACAAGAAGAAGGGGATCTACCATCGCAGAGATACGTTGGTAGAAGCCAGAGATGCGTTGGAAAAGGCTACACTGATGCAGAAATGGATGTTGGTAAGGACATTGTGAGACAAGCATCGTGA

Protein sequence

MTNEWSIRNIVKTLQEEGDLPSQRYVGRSQRCVGKGYTDAEMDVGKDIVRQAS
Homology
[Close]
BLAST of MELO3C004705 vs. NCBI nr
Match: KAA0035458.1 (hypothetical protein E6C27_scaffold285G001030 [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 1.5e-21
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0 

Query: 1  MTNEWSIRNIVKTLQEEGDLPSQRYVGRSQRCVGKGYTDAEMDVGKDIVRQAS 54
          MTNEWSIRNIVKTLQEEGDLPSQRYVGRSQRCVGKGYTDAEMDVGKDIVRQAS
Sbjct: 1  MTNEWSIRNIVKTLQEEGDLPSQRYVGRSQRCVGKGYTDAEMDVGKDIVRQAS 53

[Close]
BLAST of MELO3C004705 vs. NCBI nr
Match: TYK31067.1 (hypothetical protein E5676_scaffold455G003270 [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 1.7e-17
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0 

Query: 5  WSIRNIVKTLQEEGDLPSQRYVGRSQRCVGKGYTDAEMDVGKDIVRQAS 54
          W  +NIVKTLQEEGDLPSQRYVGRSQRCVGKGYTDAEMDVGKDIVRQAS
Sbjct: 16 WPSKNIVKTLQEEGDLPSQRYVGRSQRCVGKGYTDAEMDVGKDIVRQAS 64

[Close]
BLAST of MELO3C004705 vs. NCBI nr
Match: KAA0052854.1 (transcription factor bHLH35 [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 1.7e-04
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 0 

Query: 7   IRNIVKTLQEEGDLPSQRYVGRSQRCVGKGYTDAEMDVGKDIVRQA 53
           I N+   LQE G    QRYV RSQ C+G+GY D EMDV K+I+R+A
Sbjct: 127 IGNLRGALQENGGNLMQRYVNRSQECIGRGYADVEMDVRKNIMRKA 172

[Close]
BLAST of MELO3C004705 vs. ExPASy TrEMBL
Match: A0A5A7SXY1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G001030 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.3e-22
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0 

Query: 1  MTNEWSIRNIVKTLQEEGDLPSQRYVGRSQRCVGKGYTDAEMDVGKDIVRQAS 54
          MTNEWSIRNIVKTLQEEGDLPSQRYVGRSQRCVGKGYTDAEMDVGKDIVRQAS
Sbjct: 1  MTNEWSIRNIVKTLQEEGDLPSQRYVGRSQRCVGKGYTDAEMDVGKDIVRQAS 53

[Close]
BLAST of MELO3C004705 vs. ExPASy TrEMBL
Match: A0A5D3E4Q5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003270 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 8.3e-18
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0 

Query: 5  WSIRNIVKTLQEEGDLPSQRYVGRSQRCVGKGYTDAEMDVGKDIVRQAS 54
          W  +NIVKTLQEEGDLPSQRYVGRSQRCVGKGYTDAEMDVGKDIVRQAS
Sbjct: 16 WPSKNIVKTLQEEGDLPSQRYVGRSQRCVGKGYTDAEMDVGKDIVRQAS 64

[Close]
BLAST of MELO3C004705 vs. ExPASy TrEMBL
Match: A0A5A7UC12 (Transcription factor bHLH35 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold33G00040 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.1e-05
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 0 

Query: 7   IRNIVKTLQEEGDLPSQRYVGRSQRCVGKGYTDAEMDVGKDIVRQA 53
           I N+   LQE G    QRYV RSQ C+G+GY D EMDV K+I+R+A
Sbjct: 127 IGNLRGALQENGGNLMQRYVNRSQECIGRGYADVEMDVRKNIMRKA 172

The following BLAST results are available for this feature:
BLAST of MELO3C004705 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C004705 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0035458.11.5e-21100.00hypothetical protein E6C27_scaffold285G001030 [Cucumis melo var. makuwa][more]
TYK31067.11.7e-1793.88hypothetical protein E5676_scaffold455G003270 [Cucumis melo var. makuwa][more]
KAA0052854.11.7e-0456.52transcription factor bHLH35 [Cucumis melo var. makuwa][more]
BLAST of MELO3C004705 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SXY17.3e-22100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3E4Q58.3e-1893.88Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UC128.1e-0556.52Transcription factor bHLH35 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
BLAST of MELO3C004705 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004705.1MELO3C004705.1mRNA