MELO3C004643 (gene) Melon (DHL92) v4

Overview


Name	MELO3C004643
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Replication protein A subunit
Location	chr05: 28901439 .. 28902414 (-)
RNA-Seq Expression	MELO3C004643
Synteny	MELO3C004643

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCTGTTTTCGAAGGAAAAAGAAACCGCCATGAGATCCATTCCCCGCGCACATATATAATAAACGCACGTCTTGATGAAGCTCGTGTTCGAAGAGTTCCGGCCGAGGACTGCACTTTACCATCTCACTACCTCGCCGTCGGTAACTGATTCTGAATTCCCTCTTTAATTAATCTTGACTTGCACATGCTTTGCTTCATCAACTCCTAGATCACTCTTCCCCTTCTTTTCTTCGTCTTCAATTCCTTCCGCAATGCTTTTCCTAGGGGATTCATCAATTTCTTCGTGATCCTCCACCTTCTCCTCTCGACTCGTTCCCGAGCTCTCTTGCGGTCGTATCTGCATCATGCCGGTGCATCTCACGCCCAATGCAATCTCCGCAATTGTCGCTGGCGACGTTAATTCCAAGCCCCTGGTGCAGGTTCTGGATATCAAGCTGATCGGTAACGCGCAGGAGAGGTACAGCCTCTTGATCTCCGATGCTGTTTCTGCTGAGCAGGCTATGCTCGCCACGCAGCTTAATGATATTGTTAAGACTGGACGAGTCAAGAAAGGATCCGTTATCCAGTTGATCGATTATGTCTGCAGTCCCATCAAGAACCGCAAGTTCGTTCTCTCCCTCGTACTTCATTGATTACTTTTCGTCATCGCAGTGTGCTAATGAAACCTAATTGTATGTGGCGTTATTGTTCATTGTAATTCGCTTACTGGCCTTCTCGGACAAAGTGATGCATGTTTAGTAAAATTAGGTGTGCGCTTGAAGCTTTAAGATGAACTGTTCTGCGATTCATAGCTGAAACGGAGAAATGGTTATTTTGCTTTACATTGAAATCTCCTATAGAAAACAGTTTGTATGCTTGTTTAGTTGTTTGAAATGATAGGTGTATGTATGAATTACCGTCTAACGTTGATACTATTGTATTAGATTTTGATCATCGTTTGATTGTCAATGAAAGAAATTATTAATTAGTTTCGTG

mRNA sequence

ATCCTGTTTTCGAAGGAAAAAGAAACCGCCATGAGATCCATTCCCCGCGCACATATATAATAAACGCACGTCTTGATGAAGCTCGTGTTCGAAGAGTTCCGGCCGAGGACTGCACTTTACCATCTCACTACCTCGCCGTCGGGGATTCATCAATTTCTTCGTGATCCTCCACCTTCTCCTCTCGACTCGTTCCCGAGCTCTCTTGCGGTCGTATCTGCATCATGCCGGTGCATCTCACGCCCAATGCAATCTCCGCAATTGTCGCTGGCGACGTTAATTCCAAGCCCCTGGTGCAGGTTCTGGATATCAAGCTGATCGGTAACGCGCAGGAGAGGTACAGCCTCTTGATCTCCGATGCTGTTTCTGCTGAGCAGGCTATGCTCGCCACGCAGCTTAATGATATTGTTAAGACTGGACGAGTCAAGAAAGGATCCGTTATCCAGTTGATCGATTATGTCTGCAGTCCCATCAAGAACCGCAAGTTCGTTCTCTCCCTCGTACTTCATTGATTACTTTTCGTCATCGCAGTGTGCTAATGAAACCTAATTGTATGTGGCGTTATTGTTCATTGTAATTCGCTTACTGGCCTTCTCGGACAAAGTGATGCATGTTTAGTAAAATTAGGTGTGCGCTTGAAGCTTTAAGATGAACTGTTCTGCGATTCATAGCTGAAACGGAGAAATGGTTATTTTGCTTTACATTGAAATCTCCTATAGAAAACAGTTTGTATGCTTGTTTAGTTGTTTGAAATGATAGGTGTATGTATGAATTACCGTCTAACGTTGATACTATTGTATTAGATTTTGATCATCGTTTGATTGTCAATGAAAGAAATTATTAATTAGTTTCGTG

Coding sequence (CDS)

ATGCCGGTGCATCTCACGCCCAATGCAATCTCCGCAATTGTCGCTGGCGACGTTAATTCCAAGCCCCTGGTGCAGGTTCTGGATATCAAGCTGATCGGTAACGCGCAGGAGAGGTACAGCCTCTTGATCTCCGATGCTGTTTCTGCTGAGCAGGCTATGCTCGCCACGCAGCTTAATGATATTGTTAAGACTGGACGAGTCAAGAAAGGATCCGTTATCCAGTTGATCGATTATGTCTGCAGTCCCATCAAGAACCGCAAGTTCGTTCTCTCCCTCGTACTTCATTGA

Protein sequence

MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVLH

Homology

[Close]

BLAST of MELO3C004643 vs. NCBI nr
Match: XP_008459663.1 (PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Cucumis melo])

HSP 1 Score: 169.1 bits (427), Expect = 1.9e-38
Identity = 89/94 (94.68%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLND 60
          MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLND
Sbjct: 1  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLND 60

Query: 61 IVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL 95
          IVKTGRVKKGSVIQLIDYVCSPIKNRK ++ L L
Sbjct: 61 IVKTGRVKKGSVIQLIDYVCSPIKNRKIIVVLCL 94

[Close]

BLAST of MELO3C004643 vs. NCBI nr
Match: XP_011648589.2 (replication protein A 70 kDa DNA-binding subunit A [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 2.4e-38
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLND 60
          MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLND
Sbjct: 1  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLND 60

Query: 61 IVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL 95
          +VKTGRVKKGSVIQLIDYVCSPIKNRK ++ L L
Sbjct: 61 VVKTGRVKKGSVIQLIDYVCSPIKNRKIIVVLCL 94

[Close]

BLAST of MELO3C004643 vs. NCBI nr
Match: KGN60516.1 (hypothetical protein Csa_019336 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 2.4e-38
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLND 60
          MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLND
Sbjct: 1  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLND 60

Query: 61 IVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL 95
          +VKTGRVKKGSVIQLIDYVCSPIKNRK ++ L L
Sbjct: 61 VVKTGRVKKGSVIQLIDYVCSPIKNRKIIVVLCL 94

[Close]

BLAST of MELO3C004643 vs. NCBI nr
Match: XP_038890007.1 (replication protein A 70 kDa DNA-binding subunit A [Benincasa hispida] >XP_038890008.1 replication protein A 70 kDa DNA-binding subunit A [Benincasa hispida] >XP_038890009.1 replication protein A 70 kDa DNA-binding subunit A [Benincasa hispida])

HSP 1 Score: 167.2 bits (422), Expect = 7.1e-38
Identity = 85/94 (90.43%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLND 60
          MPVHLTPNAISAIVAGD+NSKPLVQVLDIKLIGNAQERYS+LISDAVSAEQAMLATQLND
Sbjct: 1  MPVHLTPNAISAIVAGDINSKPLVQVLDIKLIGNAQERYSILISDAVSAEQAMLATQLND 60

Query: 61 IVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL 95
          ++KTGRVKKGSVIQLIDYVCSPIKNRK ++ L L
Sbjct: 61 VIKTGRVKKGSVIQLIDYVCSPIKNRKIIVVLCL 94

[Close]

BLAST of MELO3C004643 vs. NCBI nr
Match: KAG6599522.1 (Replication protein A 70 kDa DNA-binding subunit A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 163.3 bits (412), Expect = 1.0e-36
Identity = 86/94 (91.49%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 1  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLND 60
          MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGN QERYSLLISDAVS EQAMLATQLND
Sbjct: 1  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNTQERYSLLISDAVSTEQAMLATQLND 60

Query: 61 IVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL 95
          IVKTGRVKKGSVIQLIDYVCSPIK+RK ++ L L
Sbjct: 61 IVKTGRVKKGSVIQLIDYVCSPIKSRKVIVVLSL 94

[Close]

BLAST of MELO3C004643 vs. ExPASy Swiss-Prot
Match: Q9SKI4 (Replication protein A 70 kDa DNA-binding subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA1A PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-25
Identity = 60/96 (62.50%), Postives = 76/96 (79.17%), Query Frame = 0


Query: 1  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIG----NAQERYSLLISDAVSAEQAMLAT 60
          MPV LTPNAI+AI  GDVN KPL+QVL+IK+IG     +QERY  LISD VSA+ AM+A 
Sbjct: 1  MPVSLTPNAITAIHDGDVNLKPLLQVLEIKMIGRSQERSQERYRFLISDGVSAQHAMVAV 60

Query: 61 QLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSL 93
          QLND VK+G+ +KGS++QLIDY+CS +K RK ++ L
Sbjct: 61 QLNDRVKSGQFEKGSIVQLIDYICSDVKGRKLIVVL 96

[Close]

BLAST of MELO3C004643 vs. ExPASy Swiss-Prot
Match: Q6YZ49 (Replication protein A 70 kDa DNA-binding subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=RPA1A PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.0e-10
Identity = 32/96 (33.33%), Postives = 62/96 (64.58%), Query Frame = 0


Query: 5   LTPNAISAIVAGDVNSKPLVQVLDIKLIG------NAQERYSLLISDAVSAEQAMLATQL 64
           LTPN ++A +AGD N KP++Q+++++ +          ER+  ++SD  +A  A+ A QL
Sbjct: 6   LTPNGVAAALAGDTNLKPVLQIVELRGVQVNGAGVTRGERFRAVVSDGTAASSALFAAQL 65

Query: 65  NDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL 95
           +D  ++G +++GS++QL +YV + +  R+ ++ L L
Sbjct: 66  SDHARSGALRRGSIVQLSEYVINEVGPRRIIVILNL 101

[Close]

BLAST of MELO3C004643 vs. ExPASy Swiss-Prot
Match: Q65XV7 (Replication protein A 70 kDa DNA-binding subunit C OS=Oryza sativa subsp. japonica OX=39947 GN=RPA1C PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-09
Identity = 34/105 (32.38%), Postives = 63/105 (60.00%), Query Frame = 0


Query: 1   MPVHLTPNAISAIVA---GDVNSKPLVQVLDIKLIGNAQ--------ERYSLLISDAVSA 60
           M   LTP A+ AI     G    +P++QV+D++ +            ER+ +++SD V+ 
Sbjct: 1   MEPQLTPGAVQAIAEHPDGTGTIQPVLQVVDVRPVTTKNAPPTPKPAERFRMMLSDGVNT 60

Query: 61  EQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL 95
           +Q+MLAT LN +VK   ++ G+V+QL D++C+ I+ ++ ++ + L
Sbjct: 61  QQSMLATALNPLVKDATLRPGTVVQLTDFMCNTIQGKRIIIVVKL 105

[Close]

BLAST of MELO3C004643 vs. ExPASy Swiss-Prot
Match: F4JSG3 (Replication protein A 70 kDa DNA-binding subunit E OS=Arabidopsis thaliana OX=3702 GN=RPA1E PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 9.3e-09
Identity = 37/98 (37.76%), Postives = 58/98 (59.18%), Query Frame = 0


Query: 1  MPVHLTPNAISAIVAGDVNSK----PLVQVLDIKLIGNAQ----ERYSLLISDAVSAEQA 60
          M V LT  AI  I+ G+V ++    P++QV D+K I   Q    ER+ +++SD     Q 
Sbjct: 1  MEVSLTAGAIGKIMNGEVTTEADMIPVLQVTDLKQIMAQQDPTRERFRMVLSDGTYLHQG 60

Query: 61 MLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVL 91
          ML T LN++VK G ++ GS+++L  +V   IK R+ V+
Sbjct: 61 MLGTDLNNLVKEGTLQPGSIVRLTRFVGDVIKGRRIVI 98

[Close]

BLAST of MELO3C004643 vs. ExPASy Swiss-Prot
Match: Q9FHJ6 (Replication protein A 70 kDa DNA-binding subunit C OS=Arabidopsis thaliana OX=3702 GN=RPA1C PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.1e-08
Identity = 36/105 (34.29%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 1   MPVHLTPNAISAIVAGDVNSK----PLVQVLDIKLIGN-------AQERYSLLISDAVSA 60
           M V LT   +  ++ G+V S+    P++QV ++KLI +       +  RY  L+SD    
Sbjct: 1   MAVSLTEGVVMKMLNGEVTSETDMMPVLQVTELKLIQSKLHQNQESSNRYKFLLSDGTDL 60

Query: 61  EQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL 95
              ML T LN +V  G ++ GSVI+L  Y+C+ I+ R+ V+ + L
Sbjct: 61  AAGMLNTSLNSLVNQGTIQLGSVIRLTHYICNLIQTRRIVVIMQL 105

[Close]

BLAST of MELO3C004643 vs. ExPASy TrEMBL
Match: A0A1S3CAT4 (Replication protein A subunit OS=Cucumis melo OX=3656 GN=LOC103498706 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 9.0e-39
Identity = 89/94 (94.68%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLND 60
          MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLND
Sbjct: 1  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLND 60

Query: 61 IVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL 95
          IVKTGRVKKGSVIQLIDYVCSPIKNRK ++ L L
Sbjct: 61 IVKTGRVKKGSVIQLIDYVCSPIKNRKIIVVLCL 94

[Close]

BLAST of MELO3C004643 vs. ExPASy TrEMBL
Match: A0A0A0LKL9 (Replication protein A subunit OS=Cucumis sativus OX=3659 GN=Csa_2G000250 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.2e-38
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLND 60
          MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLND
Sbjct: 1  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLND 60

Query: 61 IVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL 95
          +VKTGRVKKGSVIQLIDYVCSPIKNRK ++ L L
Sbjct: 61 VVKTGRVKKGSVIQLIDYVCSPIKNRKIIVVLCL 94

[Close]

BLAST of MELO3C004643 vs. ExPASy TrEMBL
Match: A0A6J1KGE2 (Replication protein A subunit OS=Cucurbita maxima OX=3661 GN=LOC111493656 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 6.4e-37
Identity = 85/94 (90.43%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 1  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLND 60
          MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGN QERYSLLISDAVS EQAMLATQLND
Sbjct: 1  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNTQERYSLLISDAVSTEQAMLATQLND 60

Query: 61 IVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL 95
          I+KTGRVKKGSVIQLIDYVCSPIK+RK ++ L L
Sbjct: 61 IIKTGRVKKGSVIQLIDYVCSPIKSRKVIVVLSL 94

[Close]

BLAST of MELO3C004643 vs. ExPASy TrEMBL
Match: A0A6J1G4P2 (Replication protein A subunit OS=Cucurbita moschata OX=3662 GN=LOC111450710 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 6.4e-37
Identity = 85/94 (90.43%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 1  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLND 60
          MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGN QERYSLLISDAVS EQAMLATQLND
Sbjct: 1  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNTQERYSLLISDAVSTEQAMLATQLND 60

Query: 61 IVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL 95
          I+KTGRVKKGSVIQLIDYVCSPIK+RK ++ L L
Sbjct: 61 IIKTGRVKKGSVIQLIDYVCSPIKSRKVIVVLSL 94

[Close]

BLAST of MELO3C004643 vs. ExPASy TrEMBL
Match: A0A6J1DMC5 (Replication protein A subunit OS=Momordica charantia OX=3673 GN=LOC111021895 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.3e-34
Identity = 79/94 (84.04%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 1  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLND 60
          MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIG  QERYSL ISDAVSAE AMLATQLND
Sbjct: 1  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGKTQERYSLFISDAVSAEHAMLATQLND 60

Query: 61 IVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL 95
          IVK GR+KKGSVIQLIDYVCSP++ RK ++ + L
Sbjct: 61 IVKAGRIKKGSVIQLIDYVCSPVQGRKIIVVICL 94

[Close]

BLAST of MELO3C004643 vs. TAIR 10
Match: AT2G06510.1 (replication protein A 1A )

HSP 1 Score: 116.3 bits (290), Expect = 1.3e-26
Identity = 60/96 (62.50%), Postives = 76/96 (79.17%), Query Frame = 0


Query: 1  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIG----NAQERYSLLISDAVSAEQAMLAT 60
          MPV LTPNAI+AI  GDVN KPL+QVL+IK+IG     +QERY  LISD VSA+ AM+A 
Sbjct: 1  MPVSLTPNAITAIHDGDVNLKPLLQVLEIKMIGRSQERSQERYRFLISDGVSAQHAMVAV 60

Query: 61 QLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSL 93
          QLND VK+G+ +KGS++QLIDY+CS +K RK ++ L
Sbjct: 61 QLNDRVKSGQFEKGSIVQLIDYICSDVKGRKLIVVL 96

[Close]

BLAST of MELO3C004643 vs. TAIR 10
Match: AT2G06510.2 (replication protein A 1A )

HSP 1 Score: 81.6 bits (200), Expect = 3.6e-16
Identity = 41/71 (57.75%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 26 VLDIKLIG----NAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCS 85
          VL+IK+IG     +QERY  LISD VSA+ AM+A QLND VK+G+ +KGS++QLIDY+CS
Sbjct: 3  VLEIKMIGRSQERSQERYRFLISDGVSAQHAMVAVQLNDRVKSGQFEKGSIVQLIDYICS 62

Query: 86 PIKNRKFVLSL 93
           +K RK ++ L
Sbjct: 63 DVKGRKLIVVL 73

[Close]

BLAST of MELO3C004643 vs. TAIR 10
Match: AT4G19130.1 (Replication factor-A protein 1-related )

HSP 1 Score: 60.8 bits (146), Expect = 6.6e-10
Identity = 37/98 (37.76%), Postives = 58/98 (59.18%), Query Frame = 0


Query: 1  MPVHLTPNAISAIVAGDVNSK----PLVQVLDIKLIGNAQ----ERYSLLISDAVSAEQA 60
          M V LT  AI  I+ G+V ++    P++QV D+K I   Q    ER+ +++SD     Q 
Sbjct: 1  MEVSLTAGAIGKIMNGEVTTEADMIPVLQVTDLKQIMAQQDPTRERFRMVLSDGTYLHQG 60

Query: 61 MLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVL 91
          ML T LN++VK G ++ GS+++L  +V   IK R+ V+
Sbjct: 61 MLGTDLNNLVKEGTLQPGSIVRLTRFVGDVIKGRRIVI 98

[Close]

BLAST of MELO3C004643 vs. TAIR 10
Match: AT5G45400.1 (Replication factor-A protein 1-related )

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-09
Identity = 36/105 (34.29%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 1   MPVHLTPNAISAIVAGDVNSK----PLVQVLDIKLIGN-------AQERYSLLISDAVSA 60
           M V LT   +  ++ G+V S+    P++QV ++KLI +       +  RY  L+SD    
Sbjct: 1   MAVSLTEGVVMKMLNGEVTSETDMMPVLQVTELKLIQSKLHQNQESSNRYKFLLSDGTDL 60

Query: 61  EQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL 95
              ML T LN +V  G ++ GSVI+L  Y+C+ I+ R+ V+ + L
Sbjct: 61  AAGMLNTSLNSLVNQGTIQLGSVIRLTHYICNLIQTRRIVVIMQL 105

The following BLAST results are available for this feature:

BLAST of MELO3C004643 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459663.1	1.9e-38	94.68	PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Cucumis melo]	[more]
XP_011648589.2	2.4e-38	93.62	replication protein A 70 kDa DNA-binding subunit A [Cucumis sativus]	[more]
KGN60516.1	2.4e-38	93.62	hypothetical protein Csa_019336 [Cucumis sativus]	[more]
XP_038890007.1	7.1e-38	90.43	replication protein A 70 kDa DNA-binding subunit A [Benincasa hispida] >XP_03889...	[more]
KAG6599522.1	1.0e-36	91.49	Replication protein A 70 kDa DNA-binding subunit A, partial [Cucurbita argyrospe...	[more]

BLAST of MELO3C004643 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SKI4	1.9e-25	62.50	Replication protein A 70 kDa DNA-binding subunit A OS=Arabidopsis thaliana OX=37...	[more]
Q6YZ49	1.0e-10	33.33	Replication protein A 70 kDa DNA-binding subunit A OS=Oryza sativa subsp. japoni...	[more]
Q65XV7	1.1e-09	32.38	Replication protein A 70 kDa DNA-binding subunit C OS=Oryza sativa subsp. japoni...	[more]
F4JSG3	9.3e-09	37.76	Replication protein A 70 kDa DNA-binding subunit E OS=Arabidopsis thaliana OX=37...	[more]
Q9FHJ6	2.1e-08	34.29	Replication protein A 70 kDa DNA-binding subunit C OS=Arabidopsis thaliana OX=37...	[more]

BLAST of MELO3C004643 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CAT4	9.0e-39	94.68	Replication protein A subunit OS=Cucumis melo OX=3656 GN=LOC103498706 PE=3 SV=1	[more]
A0A0A0LKL9	1.2e-38	93.62	Replication protein A subunit OS=Cucumis sativus OX=3659 GN=Csa_2G000250 PE=3 SV...	[more]
A0A6J1KGE2	6.4e-37	90.43	Replication protein A subunit OS=Cucurbita maxima OX=3661 GN=LOC111493656 PE=3 S...	[more]
A0A6J1G4P2	6.4e-37	90.43	Replication protein A subunit OS=Cucurbita moschata OX=3662 GN=LOC111450710 PE=3...	[more]
A0A6J1DMC5	2.3e-34	84.04	Replication protein A subunit OS=Momordica charantia OX=3673 GN=LOC111021895 PE=...	[more]

BLAST of MELO3C004643 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G06510.1	1.3e-26	62.50	replication protein A 1A	[more]
AT2G06510.2	3.6e-16	57.75	replication protein A 1A	[more]
AT4G19130.1	6.6e-10	37.76	Replication factor-A protein 1-related	[more]
AT5G45400.1	1.5e-09	34.29	Replication factor-A protein 1-related	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007199	Replication factor-A protein 1, N-terminal	PFAM	PF04057	Rep-A_N	coord: 5..90 e-value: 6.2E-27 score: 93.6
IPR007199	Replication factor-A protein 1, N-terminal	CDD	cd04477	RPA1N	coord: 9..90 e-value: 8.73706E-26 score: 89.9492
None	No IPR available	GENE3D	2.40.50.140		coord: 3..95 e-value: 1.7E-24 score: 88.0
None	No IPR available	PANTHER	PTHR23273	REPLICATION FACTOR A 1, RFA1	coord: 2..91
None	No IPR available	PANTHER	PTHR23273:SF47	REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A	coord: 2..91
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004643.1	MELO3C004643.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding