MELO3C004409.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C004409.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	VQ domain-containing protein
Location	chr05: 27634040 .. 27634690 (+)
RNA-Seq Expression	MELO3C004409.jh1
Synteny	MELO3C004409.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCTCTAACTCTCTCTAATGGGGAAGTGTGGAGAGAATCAATACACCAACCAAAGCCAAAGCCAAAGCCAAAACCAAAACCCTACAAAAGTTCAAAGAAAACCCATAAAAGTAAAGTACATTTCAAGTCCAATGATGATCAAAGCAAGTAGTGCACTTGAGTTCAGAGCCATTGTTCAGCAACTCACCGGCTTCGATTCCAACAGTACTCCTACTCGCCCGAGGAACCAGAAACCGCTTTCCGACTGCGCCCGAACTCCATCTTCAATGTTTCATGCAGATCGTGAAATGGAAGTTTTGAAGTTCTCAGATGATCACATGGCGTCGCTCCTCCAATTTGATGATCAAGGTTGTTTTGACACACAAAATAATAATAATAATATTCTTCCCAACAACATTATGGAATTTCAATCTTCTTGTTTTTTCCAATAGATTATATTTAAGGTTGTCTTTTGTTGGTCTGATTGGGAATTCAAGTATATATATGCAAAAAAAAAAAAAAAAGCAAATTTTCAAGCTTCAAGTATATATACTTTATTTGAACTTGCTTATTTCAATTAGGATTAATTGTTGTGAAGACACATGTTTGAACATTAATTTGTTTTGTGTCTTTATTTAATTTATGAACAACTACTTTCACTTGTTCTTTT

mRNA sequence

CTCTCTCTAACTCTCTCTAATGGGGAAGTGTGGAGAGAATCAATACACCAACCAAAGCCAAAGCCAAAGCCAAAACCAAAACCCTACAAAAGTTCAAAGAAAACCCATAAAAGTAAAGTACATTTCAAGTCCAATGATGATCAAAGCAAGTAGTGCACTTGAGTTCAGAGCCATTGTTCAGCAACTCACCGGCTTCGATTCCAACAGTACTCCTACTCGCCCGAGGAACCAGAAACCGCTTTCCGACTGCGCCCGAACTCCATCTTCAATGTTTCATGCAGATCGTGAAATGGAAGTTTTGAAGTTCTCAGATGATCACATGGCGTCGCTCCTCCAATTTGATGATCAAGGTTGTTTTGACACACAAAATAATAATAATAATATTCTTCCCAACAACATTATGGAATTTCAATCTTCTTGTTTTTTCCAATAGATTATATTTAAGGTTGTCTTTTGTTGGTCTGATTGGGAATTCAAGTATATATATGCAAAAAAAAAAAAAAAAGCAAATTTTCAAGCTTCAAGTATATATACTTTATTTGAACTTGCTTATTTCAATTAGGATTAATTGTTGTGAAGACACATGTTTGAACATTAATTTGTTTTGTGTCTTTATTTAATTTATGAACAACTACTTTCACTTGTTCTTTT

Coding sequence (CDS)

ATGGGGAAGTGTGGAGAGAATCAATACACCAACCAAAGCCAAAGCCAAAGCCAAAACCAAAACCCTACAAAAGTTCAAAGAAAACCCATAAAAGTAAAGTACATTTCAAGTCCAATGATGATCAAAGCAAGTAGTGCACTTGAGTTCAGAGCCATTGTTCAGCAACTCACCGGCTTCGATTCCAACAGTACTCCTACTCGCCCGAGGAACCAGAAACCGCTTTCCGACTGCGCCCGAACTCCATCTTCAATGTTTCATGCAGATCGTGAAATGGAAGTTTTGAAGTTCTCAGATGATCACATGGCGTCGCTCCTCCAATTTGATGATCAAGGTTGTTTTGACACACAAAATAATAATAATAATATTCTTCCCAACAACATTATGGAATTTCAATCTTCTTGTTTTTTCCAATAG

Protein sequence

MGKCGENQYTNQSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASSALEFRAIVQQLTGFDSNSTPTRPRNQKPLSDCARTPSSMFHADREMEVLKFSDDHMASLLQFDDQGCFDTQNNNNNILPNNIMEFQSSCFFQ

Homology

[Close]

BLAST of MELO3C004409.jh1 vs. NCBI nr
Match: KGN60779.1 (hypothetical protein Csa_019238 [Cucumis sativus])

HSP 1 Score: 229 bits (584), Expect = 5.98e-75
Identity = 127/141 (90.07%), Postives = 130/141 (92.20%), Query Frame = 0


Query: 1   MGKCGENQYTNQ--SQSQSQNQNPTKVQRKPIKVKYISSPMMIKASSALEFRAIVQQLTG 60
           MGKCGENQYTN   SQSQSQNQNPTKVQRKPIKVKYISSPMMIKAS+ALEFRAIVQQLTG
Sbjct: 1   MGKCGENQYTNHNHSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60

Query: 61  FDSNSTPTRPRNQKPLSDCARTPSSMFHADR-EMEVLKFSDDH-MASLLQFDDQGCFDTQ 120
           FDSN TPTR RNQK LSDCARTPS+MFHADR EMEVLKFSDDH M SLLQFD QGCF+TQ
Sbjct: 61  FDSN-TPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQ 120

Query: 121 NNNNNILPNNIMEFQSSCFFQ 137
           NNNN ILPNNIMEFQSSCFFQ
Sbjct: 121 NNNN-ILPNNIMEFQSSCFFQ 139

[Close]

BLAST of MELO3C004409.jh1 vs. NCBI nr
Match: KAG6599333.1 (hypothetical protein SDJN03_09111, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 153 bits (386), Expect = 6.18e-45
Identity = 90/138 (65.22%), Postives = 105/138 (76.09%), Query Frame = 0


Query: 1   MGKCGENQYTNQSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASSALEFRAIVQQLTGFD 60
           MGKCGEN++ +Q QSQ    NPTKVQRKPIKVKYISSPMMIKAS+A EFRAIVQQLTGF 
Sbjct: 1   MGKCGENEWKDQKQSQ----NPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFT 60

Query: 61  SNSTPTRPRNQKPLSDCARTPS-SMFHADREMEVLKFSDDHMASLLQFDDQGCFDTQNNN 120
           S+S PTR  N KP    A+TPS S  HA+ +ME LK SD +M+SLL+FDD+ CF T +N 
Sbjct: 61  SHS-PTRRSNHKPPPHAAQTPSTSTLHANPQMEALKLSD-NMSSLLEFDDEACFVTLDN- 120

Query: 121 NNILPNNIMEFQSSCFFQ 137
             +L NN M FQ+SC FQ
Sbjct: 121 --VLTNNFMGFQASCLFQ 129

[Close]

BLAST of MELO3C004409.jh1 vs. NCBI nr
Match: KAA0063578.1 (hypothetical protein E6C27_scaffold329G00880 [Cucumis melo var. makuwa])

HSP 1 Score: 143 bits (360), Expect = 1.19e-41
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 39  MMIKASSALEFRAIVQQLTGFDSNSTPTRPRNQKPLSDCARTPSSMFHADREMEVLKFSD 98
           MMIKASSALEFRAIVQQLTGFDSNSTPTR RNQK +SDCARTPSSMFHADREMEVLKFSD
Sbjct: 1   MMIKASSALEFRAIVQQLTGFDSNSTPTRRRNQKSVSDCARTPSSMFHADREMEVLKFSD 60

Query: 99  DHMASLLQFDDQGC 112
           DHMASLLQFDDQGC
Sbjct: 61  DHMASLLQFDDQGC 74

[Close]

BLAST of MELO3C004409.jh1 vs. NCBI nr
Match: XP_021282108.1 (uncharacterized protein LOC110414990 [Herrania umbratica])

HSP 1 Score: 69.3 bits (168), Expect = 8.28e-12
Identity = 52/123 (42.28%), Postives = 67/123 (54.47%), Query Frame = 0


Query: 21  NPTKVQRKPIKVKYISSPMMIKASSALEFRAIVQQLTGFDSNSTPTRPRN-QKPLSDCAR 80
           NPTK ++ PIK+KYISSPMM+KAS+A EFRAIVQ+LTG   NS    P N    L + A 
Sbjct: 33  NPTKAKKNPIKIKYISSPMMVKASNADEFRAIVQELTG--RNSDVGEPSNVPTTLPEEAN 92

Query: 81  TPSSMFHADR------EMEVLKFSDDHMASLLQFDDQGCFDTQNNNNNILPNNIMEFQSS 136
              S FH D       +  +L    D M+SL +FD+   +         +P N+  FQS 
Sbjct: 93  QVHSPFHVDSPPAKVDDKSLLDTFQDDMSSL-EFDEGFLW-------RAVPENLFGFQSP 145

[Close]

BLAST of MELO3C004409.jh1 vs. NCBI nr
Match: XP_010102262.1 (sigma factor binding protein 1, chloroplastic [Morus notabilis] >EXB93205.1 hypothetical protein L484_024544 [Morus notabilis])

HSP 1 Score: 66.6 bits (161), Expect = 1.33e-10
Identity = 36/60 (60.00%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 5  GENQYTNQSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASSALEFRAIVQQLTGFDSNST 64
          G +QY N    +SQ Q P+K ++KPIK+KYISSPMM++A++A EFRAIVQ+LTG +SN T
Sbjct: 8  GNSQYQNNPHLRSQKQ-PSKGKKKPIKIKYISSPMMVRANNASEFRAIVQELTGRNSNYT 66

[Close]

BLAST of MELO3C004409.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LIA7 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010150 PE=4 SV=1)

HSP 1 Score: 229 bits (584), Expect = 2.89e-75
Identity = 127/141 (90.07%), Postives = 130/141 (92.20%), Query Frame = 0


Query: 1   MGKCGENQYTNQ--SQSQSQNQNPTKVQRKPIKVKYISSPMMIKASSALEFRAIVQQLTG 60
           MGKCGENQYTN   SQSQSQNQNPTKVQRKPIKVKYISSPMMIKAS+ALEFRAIVQQLTG
Sbjct: 1   MGKCGENQYTNHNHSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60

Query: 61  FDSNSTPTRPRNQKPLSDCARTPSSMFHADR-EMEVLKFSDDH-MASLLQFDDQGCFDTQ 120
           FDSN TPTR RNQK LSDCARTPS+MFHADR EMEVLKFSDDH M SLLQFD QGCF+TQ
Sbjct: 61  FDSN-TPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQ 120

Query: 121 NNNNNILPNNIMEFQSSCFFQ 137
           NNNN ILPNNIMEFQSSCFFQ
Sbjct: 121 NNNN-ILPNNIMEFQSSCFFQ 139

[Close]

BLAST of MELO3C004409.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V7M1 (VQ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G00880 PE=4 SV=1)

HSP 1 Score: 143 bits (360), Expect = 5.74e-42
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 39  MMIKASSALEFRAIVQQLTGFDSNSTPTRPRNQKPLSDCARTPSSMFHADREMEVLKFSD 98
           MMIKASSALEFRAIVQQLTGFDSNSTPTR RNQK +SDCARTPSSMFHADREMEVLKFSD
Sbjct: 1   MMIKASSALEFRAIVQQLTGFDSNSTPTRRRNQKSVSDCARTPSSMFHADREMEVLKFSD 60

Query: 99  DHMASLLQFDDQGC 112
           DHMASLLQFDDQGC
Sbjct: 61  DHMASLLQFDDQGC 74

[Close]

BLAST of MELO3C004409.jh1 vs. ExPASy TrEMBL
Match: A0A6J1A533 (uncharacterized protein LOC110414990 OS=Herrania umbratica OX=108875 GN=LOC110414990 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.01e-12
Identity = 52/123 (42.28%), Postives = 67/123 (54.47%), Query Frame = 0


Query: 21  NPTKVQRKPIKVKYISSPMMIKASSALEFRAIVQQLTGFDSNSTPTRPRN-QKPLSDCAR 80
           NPTK ++ PIK+KYISSPMM+KAS+A EFRAIVQ+LTG   NS    P N    L + A 
Sbjct: 33  NPTKAKKNPIKIKYISSPMMVKASNADEFRAIVQELTG--RNSDVGEPSNVPTTLPEEAN 92

Query: 81  TPSSMFHADR------EMEVLKFSDDHMASLLQFDDQGCFDTQNNNNNILPNNIMEFQSS 136
              S FH D       +  +L    D M+SL +FD+   +         +P N+  FQS 
Sbjct: 93  QVHSPFHVDSPPAKVDDKSLLDTFQDDMSSL-EFDEGFLW-------RAVPENLFGFQSP 145

[Close]

BLAST of MELO3C004409.jh1 vs. ExPASy TrEMBL
Match: W9RT96 (VQ domain-containing protein OS=Morus notabilis OX=981085 GN=L484_024544 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.45e-11
Identity = 36/60 (60.00%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 5  GENQYTNQSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASSALEFRAIVQQLTGFDSNST 64
          G +QY N    +SQ Q P+K ++KPIK+KYISSPMM++A++A EFRAIVQ+LTG +SN T
Sbjct: 8  GNSQYQNNPHLRSQKQ-PSKGKKKPIKIKYISSPMMVRANNASEFRAIVQELTGRNSNYT 66

[Close]

BLAST of MELO3C004409.jh1 vs. ExPASy TrEMBL
Match: A0A2P6R5P1 (VQ domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0450331 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.15e-10
Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 29  PIKVKYISSPMMIKASSALEFRAIVQQLTGFDSNST-PTRPRNQKP-LSDCARTPSSMFH 88
           PI +KYISSPMM++A++A EFRAIVQ+LTG +S++T P    NQ   +S+   + S+   
Sbjct: 25  PIMIKYISSPMMVQANNASEFRAIVQELTGQNSDTTIPDHGTNQASWVSNHRASQSANMK 84

Query: 89  ADREMEVLKFSDDHMASLLQFDD 109
                E++KFSDD +    QFD+
Sbjct: 85  TQNADELMKFSDDRVEVFSQFDE 107

The following BLAST results are available for this feature:

BLAST of MELO3C004409.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60779.1	5.98e-75	90.07	hypothetical protein Csa_019238 [Cucumis sativus]	[more]
KAG6599333.1	6.18e-45	65.22	hypothetical protein SDJN03_09111, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0063578.1	1.19e-41	95.95	hypothetical protein E6C27_scaffold329G00880 [Cucumis melo var. makuwa]	[more]
XP_021282108.1	8.28e-12	42.28	uncharacterized protein LOC110414990 [Herrania umbratica]	[more]
XP_010102262.1	1.33e-10	60.00	sigma factor binding protein 1, chloroplastic [Morus notabilis] >EXB93205.1 hypo...	[more]

BLAST of MELO3C004409.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C004409.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIA7	2.89e-75	90.07	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010150 PE=4 SV=...	[more]
A0A5A7V7M1	5.74e-42	95.95	VQ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A6J1A533	4.01e-12	42.28	uncharacterized protein LOC110414990 OS=Herrania umbratica OX=108875 GN=LOC11041...	[more]
W9RT96	6.45e-11	60.00	VQ domain-containing protein OS=Morus notabilis OX=981085 GN=L484_024544 PE=4 SV...	[more]
A0A2P6R5P1	1.15e-10	45.78	VQ domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0450331...	[more]

BLAST of MELO3C004409.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 35..63 e-value: 4.2E-9 score: 35.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR33624:SF17	VQ MOTIF PROTEIN	coord: 9..134
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 9..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004409.jh1.t1	MELO3C004409.jh1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity