MELO3C004388 (gene) Melon (DHL92) v4

Overview


Name	MELO3C004388
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	PSII 6.1 kDa protein
Location	chr05: 26861995 .. 26863931 (-)
RNA-Seq Expression	MELO3C004388
Synteny	MELO3C004388

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAAAGGATAAAAAAATAGTCCCACCTAATTTATTTTTAGCTTTCTCCCCTGTCCTCAGACTTTCTCCTCTCCCACTCAAGAAAACTTTCTTTTTCGTAATCCCTCTCACTCGCATGTATAGTTCTCACCAATTCTCCCTTTCTTCCACCTCTGGCGACGATGCTTTTCACTCAGATCAGCAAACATAAACTTTTATGTCATCGAAGTCACTCAATTAGCAAACGATGACATTATGTGGCATGACAAAGATGTAACAGTGACGATATACACTGTGTGGCGTTTTATCATACCTGCAACAGAACGGGGGAAAGAGTGGTAAGTACAAAGAAAATTTCATAACACGCAAATGGTTAGAAAAAACGAAAAAGTCGGGTCAAATATTATATGGGCGCAACTTAAGTAATTACATACTATTCAGTATGAGAACTCTTTTCTTTTTTTATATAGTTTTTTTAATCTTCTCATTTCTTTATTTTTCTCCCACAAAGCCATCAACAACACCATTAGTCATAGACTATGACTCAATATTTCACTGATGCAAATGGATGGGTGGTACACGTGGAGAGCAAATATTGGATGAATAAGGATTGAGTATACAAAACTCTTTGGCTGTTCTCATATCCAAACTGTGTGGTGCATAAAAATGAAAACTTTTCATTACCCTCAACTTTAAAACACAAAAAAAAAAAAAGAACACGAGATCCAAGTTTTACAGCCAAACAAAAGCATTTCCCTTCATCCTCAAGCAGGTGTTTTTAGCTGCAAACATGGCTTCTACTCTGCTTCCTCACTCCAGGCTTTTACTCAAAGGATCATCCAAGCTTCTTCCATCCTCAACAATGGCAGCTCCCAGTAAGTTTCTTCGTTTCCAAACAGCTTTTTCACTACTTTTTGTTACCCAATTACGGAAAAAGCTTCAACCTTCTTACTCTTCCTTTCAACAACTGAACTGGGTTTTGACCCAATTTTTAAAATCGCTTTGAAATCCCAAGAGAAATTTTGGTTGTATGAAAAGAGCAATCAAAAGTGTAGAACCAAATTTTTTGTTGATTTTGAATGGTGGAAAAGCATGTTTGAGAACTGAGAGTGATTTTCCATACGACAAAGGTGATTTTAGCAATCTCAAAATCACTCCCAAACAAGTCTCTAGTTTCTTATTAATCAAATATGTTAAATATAGACAATAAGATTAGATTTGACAAAGAATATGTGTGAAACATGAAAGGTTAAATTGGGTTGACTTTTGTTCAATCCAGCCTTTTCCCTTTTGCTATCCGTCTTGATGGACCGACAAATTTCATTATCGAATAAGGAGGAAATAGGTAAGAGGGAGCATGGTGTGTACATTTTTATCTAAACATACTTCCACTGATCTAAACATACATTTAAACTGATATAGCGTACTTTTTCCAGGGTTGCCCACGTTGCAAAAGATGAAGATGGGAAGGATAAAATGTAAGGTGGAAGAGAAGCCAGAAGGGAAGAAGTCAGAAGAAAGCATGGTTCCGGGGACAGTGGCCGCAGTGGCGATGGCTGCATTGGCGGCAGCAGGACCTGCGGTGGCGCTGGTGGATGAGAGGATGAGCACAGAAGGGACAGGGCTGCCTTTTGGTTTGAGCAACAACCTTCTTGGGTGGATTTTGGCTGGGATGTTTGGTTTAATTTGGGCTCTATATTTTGTCTATGCTTCATCCTTGGATGAGGATGAAGATTCTGGTTTGTCTCTTTGAATCAATCACCCAAATTTCTTAAAATGGAAGTAATGGTTGTATTCATTTTTTCACCGTTCACCCAATTGCTCAGTTCAACCATAACTTTTCATGTATTAATTCCAAGTATACATATCTACATTTTCAGCTCAATCATTGTACAAAATTAATGTTGATTATTGAGCTAGATTATTTTTAATAAAAAGATGAGATAGGAAGATTTTG

mRNA sequence

AAAGAAAGGATAAAAAAATAGTCCCACCTAATTTATTTTTAGCTTTCTCCCCTGTCCTCAGACTTTCTCCTCTCCCACTCAAGAAAACTTTCTTTTTCGTAATCCCTCTCACTCGCATGTATAGTTCTCACCAATTCTCCCTTTCTTCCACCTCTGGCGACGATGCTTTTCACTCAGATCAGCAAACATAAACTTTTATGTCATCGAAGTCACTCAATTAGCAAACGATGACATTATGTGGCATGACAAAGATGTAACAGTGACGATATACACTGTGTGGCGTTTTATCATACCTGCAACAGAACGGGGGAAAGAGTGGTAAGTACAAAGAAAATTTCATAACACGCAAATGGTTAGAAAAAACGAAAAAGTCGGGTCAAATATTATATGGGCGCAACTTAAGTAATTACATACTATTCAGTATGAGAACTCTTTTCTTTTTTTATATAGTTTTTTTAATCTTCTCATTTCTTTATTTTTCTCCCACAAAGCCATCAACAACACCATTAGTCATAGACTATGACTCAATATTTCACTGATGCAAATGGATGGGTGGTACACGTGGAGAGCAAATATTGGATGAATAAGGATTGAGTATACAAAACTCTTTGGCTGTTCTCATATCCAAACTGTGTGGTGCATAAAAATGAAAACTTTTCATTACCCTCAACTTTAAAACACAAAAAAAAAAAAAGAACACGAGATCCAAGTTTTACAGCCAAACAAAAGCATTTCCCTTCATCCTCAAGCAGGTGTTTTTAGCTGCAAACATGGCTTCTACTCTGCTTCCTCACTCCAGGCTTTTACTCAAAGGATCATCCAAGCTTCTTCCATCCTCAACAATGGCAGCTCCCAGGTTGCCCACGTTGCAAAAGATGAAGATGGGAAGGATAAAATGTAAGGTGGAAGAGAAGCCAGAAGGGAAGAAGTCAGAAGAAAGCATGGTTCCGGGGACAGTGGCCGCAGTGGCGATGGCTGCATTGGCGGCAGCAGGACCTGCGGTGGCGCTGGTGGATGAGAGGATGAGCACAGAAGGGACAGGGCTGCCTTTTGGTTTGAGCAACAACCTTCTTGGGTGGATTTTGGCTGGGATGTTTGGTTTAATTTGGGCTCTATATTTTGTCTATGCTTCATCCTTGGATGAGGATGAAGATTCTGGTTTGTCTCTTTGAATCAATCACCCAAATTTCTTAAAATGGAAGTAATGGTTGTATTCATTTTTTCACCGTTCACCCAATTGCTCAGTTCAACCATAACTTTTCATGTATTAATTCCAAGTATACATATCTACATTTTCAGCTCAATCATTGTACAAAATTAATGTTGATTATTGAGCTAGATTATTTTTAATAAAAAGATGAGATAGGAAGATTTTG

Coding sequence (CDS)

ATGGCTTCTACTCTGCTTCCTCACTCCAGGCTTTTACTCAAAGGATCATCCAAGCTTCTTCCATCCTCAACAATGGCAGCTCCCAGGTTGCCCACGTTGCAAAAGATGAAGATGGGAAGGATAAAATGTAAGGTGGAAGAGAAGCCAGAAGGGAAGAAGTCAGAAGAAAGCATGGTTCCGGGGACAGTGGCCGCAGTGGCGATGGCTGCATTGGCGGCAGCAGGACCTGCGGTGGCGCTGGTGGATGAGAGGATGAGCACAGAAGGGACAGGGCTGCCTTTTGGTTTGAGCAACAACCTTCTTGGGTGGATTTTGGCTGGGATGTTTGGTTTAATTTGGGCTCTATATTTTGTCTATGCTTCATCCTTGGATGAGGATGAAGATTCTGGTTTGTCTCTTTGA

Protein sequence

MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKSEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL

Homology

[Close]

BLAST of MELO3C004388 vs. NCBI nr
Match: XP_008456049.1 (PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucumis melo])

HSP 1 Score: 250.4 bits (638), Expect = 8.9e-63
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKSEESMVP 60
           MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKSEESMVP
Sbjct: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKSEESMVP 60

Query: 61  GTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYA 120
           GTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYA
Sbjct: 61  GTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYA 120

Query: 121 SSLDEDEDSGLSL 134
           SSLDEDEDSGLSL
Sbjct: 121 SSLDEDEDSGLSL 133

[Close]

BLAST of MELO3C004388 vs. NCBI nr
Match: XP_016902308.1 (PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X1 [Cucumis melo])

HSP 1 Score: 235.3 bits (599), Expect = 3.0e-58
Identity = 132/155 (85.16%), Postives = 132/155 (85.16%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPR----------------------LPTLQKMKM 60
           MASTLLPHSRLLLKGSSKLLPSSTMAAP                       LPTLQKMKM
Sbjct: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPTFSLLLSVLMDRQISLSNKEEIGLPTLQKMKM 60

Query: 61  GRIKCKVEEKPEGKKSEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSN 120
           GRIKCKVEEKPEGKKSEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSN
Sbjct: 61  GRIKCKVEEKPEGKKSEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSN 120

Query: 121 NLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL 134
           NLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL
Sbjct: 121 NLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL 155

[Close]

BLAST of MELO3C004388 vs. NCBI nr
Match: XP_004139238.1 (photosystem II reaction center W protein, chloroplastic [Cucumis sativus] >KGN60797.1 hypothetical protein Csa_019406 [Cucumis sativus])

HSP 1 Score: 220.3 bits (560), Expect = 9.8e-54
Identity = 122/134 (91.04%), Postives = 124/134 (92.54%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKK-SEESMV 60
           MASTLLPHSRLLLKGSSKLL S TMAA RLPTLQKMK G IKC VEEKPEGKK SEESMV
Sbjct: 1   MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMV 60

Query: 61  PGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVY 120
           PGTV AVAMAALAAAGPAVALVDER+STEGTGLPFGLSNNLLGWILA +F LIWALYFVY
Sbjct: 61  PGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVY 120

Query: 121 ASSLDEDEDSGLSL 134
           ASSLDEDEDSGLSL
Sbjct: 121 ASSLDEDEDSGLSL 134

[Close]

BLAST of MELO3C004388 vs. NCBI nr
Match: XP_038890119.1 (photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 218.0 bits (554), Expect = 4.9e-53
Identity = 117/133 (87.97%), Postives = 124/133 (93.23%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKSEESMVP 60
           MASTLL HSRLLLKGSSK+LPS  +AA RLP LQKMK G IKC+VEEKPEGKKSEES+V 
Sbjct: 1   MASTLLSHSRLLLKGSSKVLPSPPVAAHRLPMLQKMKKGGIKCRVEEKPEGKKSEESLVS 60

Query: 61  GTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYA 120
           GT+AAVAMAALAAAGPAVALVDER+STEGTGLPFGLSNNLLGWILAG+F LIWALYFVYA
Sbjct: 61  GTMAAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFALIWALYFVYA 120

Query: 121 SSLDEDEDSGLSL 134
           SSLDEDEDSGLSL
Sbjct: 121 SSLDEDEDSGLSL 133

[Close]

BLAST of MELO3C004388 vs. NCBI nr
Match: XP_022937622.1 (photosystem II reaction center W protein, chloroplastic-like [Cucurbita moschata] >KAG6586311.1 Photosystem II reaction center W protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021160.1 Photosystem II reaction center W protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 196.8 bits (499), Expect = 1.2e-46
Identity = 104/133 (78.20%), Postives = 115/133 (86.47%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKSEESMVP 60
           MASTLL HS + LKGS KLLP   MAA RLP +QKMK G IKCK+EEK EGK+S+ES++ 
Sbjct: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLIS 60

Query: 61  GTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYA 120
           GTVAA+A   +A AGPAVALVDER+STEGTGLPFGLSNNLLGWILAGMFG IWALYFVYA
Sbjct: 61  GTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA 120

Query: 121 SSLDEDEDSGLSL 134
           SSL+EDEDSGLSL
Sbjct: 121 SSLEEDEDSGLSL 133

[Close]

BLAST of MELO3C004388 vs. ExPASy Swiss-Prot
Match: Q41387 (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea OX=3562 GN=psbW PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 7.6e-25
Identity = 69/136 (50.74%), Postives = 88/136 (64.71%), Query Frame = 0


Query: 3   STLLPHSRLLLKGSSKLLPSSTMAAPRLPTL---QKMKMGRIKCKVEEKPEGKKSEESMV 62
           +T+   S   L   + L+ +S +     P L      K  ++ C +E KP   ++  +  
Sbjct: 2   ATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTTN 61

Query: 63  PGTVAAVAMAALAA--AGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYF 122
               A++  AA AA  + PA+ALVDERMSTEGTGLPFGLSNNLLGWIL G+FGLIWALYF
Sbjct: 62  KSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYF 121

Query: 123 VYASSLDEDEDSGLSL 134
           VYAS L+EDE+SGLSL
Sbjct: 122 VYASGLEEDEESGLSL 137

[Close]

BLAST of MELO3C004388 vs. ExPASy Swiss-Prot
Match: Q39194 (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBW PE=1 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 1.0e-24
Identity = 69/119 (57.98%), Postives = 86/119 (72.27%), Query Frame = 0


Query: 19  LLPSSTMAAP--RLPTLQKMKMGRIKCKVEEKPEGKKSEESMVPGTVAAVAMAALAA--A 78
           L P+  ++AP   LP + K K G ++C +E     K+   S++   V+A A AAL A  +
Sbjct: 20  LKPTVAISAPVLGLPPMGK-KKGGVRCSMET----KQGNVSVMGAGVSAAATAALTAVMS 79

Query: 79  GPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL 134
            PA+ALVDERMSTEGTGLPFGLSNNLLGWIL G+FGLIW  +FVY SSL+EDE+SGLSL
Sbjct: 80  NPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVYTSSLEEDEESGLSL 133

[Close]

BLAST of MELO3C004388 vs. ExPASy Swiss-Prot
Match: Q5ZBY9 (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSBW PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.1e-19
Identity = 55/116 (47.41%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 16  SSKLLPSSTMAAP-RLPTLQKMKMGRIKCKVEEKPEGKKSEESMVPGTVAAVAMAALAAA 75
           ++ ++  + +A P  LP ++  +  R++C   ++     +  + V G  A++ +A  A A
Sbjct: 9   ATSVVARAVLAGPLGLPQMRARRSERVRCNYSKE---AATPAAAVKGAGASL-LAMAATA 68

Query: 76  GPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYASSLDEDEDSG 131
            PA+ALVDERMSTEGTGL  GLSNNLLGWIL G+FGLIW+LY +Y S L+EDE+SG
Sbjct: 69  APAMALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLEEDEESG 120

[Close]

BLAST of MELO3C004388 vs. ExPASy Swiss-Prot
Match: Q9SPI9 (Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=psbW PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-11
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 68  MAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYASSLD--E 127
           + A  AA PA ALVDERM+ +GTG PFG+++ +LGW+L G+FG +WA++F+    L   E
Sbjct: 48  LPATLAAHPAFALVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWAIWFIGQKDLGDFE 107

Query: 128 DEDSGLSL 134
           D D GL L
Sbjct: 108 DADDGLKL 115

[Close]

BLAST of MELO3C004388 vs. ExPASy TrEMBL
Match: A0A1S3C2B0 (PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496095 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 4.3e-63
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKSEESMVP 60
           MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKSEESMVP
Sbjct: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKSEESMVP 60

Query: 61  GTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYA 120
           GTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYA
Sbjct: 61  GTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYA 120

Query: 121 SSLDEDEDSGLSL 134
           SSLDEDEDSGLSL
Sbjct: 121 SSLDEDEDSGLSL 133

[Close]

BLAST of MELO3C004388 vs. ExPASy TrEMBL
Match: A0A1S4E257 (PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496095 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.4e-58
Identity = 132/155 (85.16%), Postives = 132/155 (85.16%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPR----------------------LPTLQKMKM 60
           MASTLLPHSRLLLKGSSKLLPSSTMAAP                       LPTLQKMKM
Sbjct: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPTFSLLLSVLMDRQISLSNKEEIGLPTLQKMKM 60

Query: 61  GRIKCKVEEKPEGKKSEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSN 120
           GRIKCKVEEKPEGKKSEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSN
Sbjct: 61  GRIKCKVEEKPEGKKSEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSN 120

Query: 121 NLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL 134
           NLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL
Sbjct: 121 NLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL 155

[Close]

BLAST of MELO3C004388 vs. ExPASy TrEMBL
Match: A0A0A0LJA2 (PSII 6.1 kDa protein OS=Cucumis sativus OX=3659 GN=Csa_2G010330 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.8e-54
Identity = 122/134 (91.04%), Postives = 124/134 (92.54%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKK-SEESMV 60
           MASTLLPHSRLLLKGSSKLL S TMAA RLPTLQKMK G IKC VEEKPEGKK SEESMV
Sbjct: 1   MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMV 60

Query: 61  PGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVY 120
           PGTV AVAMAALAAAGPAVALVDER+STEGTGLPFGLSNNLLGWILA +F LIWALYFVY
Sbjct: 61  PGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVY 120

Query: 121 ASSLDEDEDSGLSL 134
           ASSLDEDEDSGLSL
Sbjct: 121 ASSLDEDEDSGLSL 134

[Close]

BLAST of MELO3C004388 vs. ExPASy TrEMBL
Match: A0A6J1FBR0 (PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111443974 PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 5.6e-47
Identity = 104/133 (78.20%), Postives = 115/133 (86.47%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKSEESMVP 60
           MASTLL HS + LKGS KLLP   MAA RLP +QKMK G IKCK+EEK EGK+S+ES++ 
Sbjct: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLIS 60

Query: 61  GTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYA 120
           GTVAA+A   +A AGPAVALVDER+STEGTGLPFGLSNNLLGWILAGMFG IWALYFVYA
Sbjct: 61  GTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA 120

Query: 121 SSLDEDEDSGLSL 134
           SSL+EDEDSGLSL
Sbjct: 121 SSLEEDEDSGLSL 133

[Close]

BLAST of MELO3C004388 vs. ExPASy TrEMBL
Match: A0A6J1KED2 (PSII 6.1 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111493586 PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 6.2e-46
Identity = 107/133 (80.45%), Postives = 115/133 (86.47%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKSEESMVP 60
           MAS+LL  SR+LLKGSS +LPS  MAA RLP   KMK   IKCK EEK EGK+SEE MV 
Sbjct: 1   MASSLLSPSRILLKGSSMILPSPLMAAHRLP---KMKRRAIKCKAEEKREGKRSEERMVS 60

Query: 61  GTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYA 120
           GTVAAVAMA +AAAGPAVALVDER+STEGTGLPFGLSNNLLGWIL GMFGLIW+LYFVYA
Sbjct: 61  GTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILVGMFGLIWSLYFVYA 120

Query: 121 SSLDEDEDSGLSL 134
           SSLDED+DSGLSL
Sbjct: 121 SSLDEDDDSGLSL 130

[Close]

BLAST of MELO3C004388 vs. TAIR 10
Match: AT2G30570.1 (photosystem II reaction center W )

HSP 1 Score: 114.4 bits (285), Expect = 7.1e-26
Identity = 69/119 (57.98%), Postives = 86/119 (72.27%), Query Frame = 0


Query: 19  LLPSSTMAAP--RLPTLQKMKMGRIKCKVEEKPEGKKSEESMVPGTVAAVAMAALAA--A 78
           L P+  ++AP   LP + K K G ++C +E     K+   S++   V+A A AAL A  +
Sbjct: 20  LKPTVAISAPVLGLPPMGK-KKGGVRCSMET----KQGNVSVMGAGVSAAATAALTAVMS 79

Query: 79  GPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL 134
            PA+ALVDERMSTEGTGLPFGLSNNLLGWIL G+FGLIW  +FVY SSL+EDE+SGLSL
Sbjct: 80  NPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVYTSSLEEDEESGLSL 133

The following BLAST results are available for this feature:

BLAST of MELO3C004388 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456049.1	8.9e-63	100.00	PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform ...	[more]
XP_016902308.1	3.0e-58	85.16	PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform ...	[more]
XP_004139238.1	9.8e-54	91.04	photosystem II reaction center W protein, chloroplastic [Cucumis sativus] >KGN60...	[more]
XP_038890119.1	4.9e-53	87.97	photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]	[more]
XP_022937622.1	1.2e-46	78.20	photosystem II reaction center W protein, chloroplastic-like [Cucurbita moschata...	[more]

BLAST of MELO3C004388 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q41387	7.6e-25	50.74	Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea OX=...	[more]
Q39194	1.0e-24	57.98	Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q5ZBY9	2.1e-19	47.41	Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. j...	[more]
Q9SPI9	1.6e-11	51.47	Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhar...	[more]

BLAST of MELO3C004388 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C2B0	4.3e-63	100.00	PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496095 PE=3 SV=1	[more]
A0A1S4E257	1.4e-58	85.16	PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496095 PE=3 SV=1	[more]
A0A0A0LJA2	4.8e-54	91.04	PSII 6.1 kDa protein OS=Cucumis sativus OX=3659 GN=Csa_2G010330 PE=3 SV=1	[more]
A0A6J1FBR0	5.6e-47	78.20	PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111443974 PE=3 SV=1	[more]
A0A6J1KED2	6.2e-46	80.45	PSII 6.1 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111493586 PE=3 SV=1	[more]

BLAST of MELO3C004388 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30570.1	7.1e-26	57.98	photosystem II reaction center W	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009806	Photosystem II PsbW, class 2	PFAM	PF07123	PsbW	coord: 27..133 e-value: 4.8E-44 score: 149.6
IPR009806	Photosystem II PsbW, class 2	PANTHER	PTHR34552	PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC	coord: 2..133
None	No IPR available	PANTHER	PTHR34552:SF5	PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC-LIKE	coord: 2..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004388.1	MELO3C004388.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009523	photosystem II