MELO3C004279 (gene) Melon (DHL92) v4

Overview


Name	MELO3C004279
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	RING-type domain-containing protein
Location	chr05: 25759610 .. 25763629 (-)
RNA-Seq Expression	MELO3C004279
Synteny	MELO3C004279

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGTCGACTTGTCGTTTAATCGAGCTGTCGTTCACTGTAAACCCATGTCGGAGAAGTCCATGGAATTGCAGAGCGCTGCGTCAATGGAGATTAAGACAAGCACTTCCACTTCGGACTATACGGACCCTTGCCCGATCTGCCTTGGACCCATAAATCAATCTTCCTATCTCGACAAGTGCTTTCGTAAGTCTTTATTTCTCTTAATCTGATCTTTCTTTCGTTTTTCTTGAATTTTCCTGTCATCTAAATAGAAATTGATTTAGAAAATTTATTCATTTTTATGAATCGGGGTTTCTTTTTTCCGATTCCTGTAGTGACCCATTTGGAAATAATCCTTTACATGTTACTGTATCAACAGATGAACTGAGAATCACTCTGTTCTCCTTTTATTCGGAGATTTTAGCTTTTAGCTTTTCCCCCAATTATCAAGGTTTCTGCCACTGTTATTCGTATTTGATGAACGAACTTGTTTGATGATTATAGTGTCTTGTATGATGATTAACTGAATTCATTTGTTATAGAGATGAACTAGCTAATTCCTTAGCTTTGAGCGGAAAAAAAAGTTCTTCTGGAGATGCTTAATTTGATTTAATATACACAGTTCTTTAGTGGCTGTATACTTTAAGTAAGGAATTTTGAGTGTCATTATGGCATCATCTTCTTGATGAAATGGAAAACAGAAACAGCAGCGAGAATGCGTTAGTTTTCTTGGATATGTTGAATGTAATCATTGATGAACTCTTCTACTATCTTTGAGATGAATACGTTCATTTAATTTAAATTTAATATACTTGCTTATGTCTAGGCATGAATATTAGTCTGGTATCATGTTGATTACCAGTAATTTCTAAAGTTTAAACCTTAAAGTTTTGGTGAATTTGATCATTTAGTTAACTCTAAAGAGTCTATTTGTTCATTCATGTTGAGTACAACGTACCATTTAGAAAAAGAGGAATGTCGATAAAGTTTGTCGAGAAGTTTGAATGGTTTTATCTTTTAACTCTATTTATCTGTCTTGCAGATAACTTTTGTTACAATTGCATTGTACAATGGACCAAAGTGGTTTCTGGGAAGCGCTCCTGCAGACTTTCCTCCATTAAATGTCCTTTATGCAAGGTTCAATTTATCTTCCCCCGTTAATCTTGTTTTACTTTAGCATTCCATACTTCTAGTATTGCATTTCTTATTTTCTTATAATTAATCACCAGACAGAAAGTTCATCTATAATACATGGGTTAGATGGACACCATTTCCAAAGACATTATGTTAATCCAGATTTCCAGGATAGGTATCTTCGTGTTGACATTTCCCCTAGTTCTTCTATTTTTATTTTCTCTACCTTAATTGACTACGGCTATTATTAATGCTATTTGCAGCTTTATCTTATCAAAAGCTCATAAGTATAGATTACAGTGCTACTATACTGAACCAGGTCGTTTTTTGTTTATCGTTCAACTTATTATGTGATGATGCTCCAACATTTACATCTGGTTACTTGGATTTGTGAATTTCCCTAATTGTCTGCATGTAGGTTTCTTGAATGACATATTTGATGTACAGAGGTATTGGAAGTTACAGAAGTATCTCCAGGCAAACCAGTGGCTTGAAGTTTGGTTGAAGAGGGAACTTCAAGCTTTGATTCAGGTTAGTGTCTTATTTTCTTACATCACATTTATACTTCTATGGGATATTGCTTCCTTTGGCCCCCTTTTTCCTTGGAGAATTGTTTGCCTCCAATATCAAACAACATTCTCAATTGTCAAGACCAAATAGGTGGATGGTAAAGGGAGGGAGCTTTTCATTCCTACAGCCGGATTCTTGGGGAAATGAATTCTATCATTGCTCCTAGTAGTTAATGAAATTCTTAATTACAAAATGTCCCTGTTGATCCATCAATAATGGACCATTTGTTAATGAGACACAAGACAAACCTAGAAAGTATTTTTTCTGCAAATCATCCCAATAGTTTCTAACAAAGCCATCCAATTATCCAAGTAATTGGTATCCTATTGAAACATAGAAATCATTGACTAGTGTCGCCTACTTGCTTCAAGCATATATGGAATGGCCGATCATTCATTGAGTTCATGAGTTTTTTAGTGAGTTTTTTAAGACCCCACTAATCAGGCTTACACTTTTGAGCTCATAATGAATGAAATTCACCCTGGACGAAGATCGAATCTCCCCTCCACATAGGCACGTAAAAAGGTAGGACAGCGATGGAGTTTCTCCCATTTGTGGCATAGTGGGCTTTGGGATGGGTTGTCCTTCTAAGGATGAGGGGGTTTGTCTGTTGATTGAGGATTTAAGAACTTTATTTTATTTCAATGGTGAGGAAACCTATGTGTATTGTGGAAGTAGACAAGATTAGGTAAAGATGTGCAACTTCCTTTATCTGTGAGGAATTGAGAACTCTGTTTTAGTAGAAAAGGGATTACTGTAGACGAAATGAGATAGCGGTGGTAGATTTATGTTACCGTTTCTATTGCATAGTTTCTTGATTTATCTATTCTGTTTCTCTGTAGTACAGTTCATTGTTGATGATCACTGATAGAGTTTTATTCACTTTTACAGGAAGAAGATGTTGACATAATTATGCATCACTTTGTTGGTTTAATTAATTCATTTTTTCGTAGGTAATACTAATAATCATCCATCATTACATTCTATACTTTGGTCAAATAAAAATTTGGTTAAAAACACCAATTTCGTGGCTAGTCCCTAAGTTTTAGTTTGTAATAAGTCCCTGTGAGCAGTTTTTATAATATAGTGTCCATACCATATAAGTACCGTAAAAAATTAATGGAATTTCTTACCCAAGTATATGCAATCAGTAGCACTTTTGGGGTTAATAATTAAGTGTGTAATAACATTTTTAAAGAATTATAAAATTTATCAATGCTAGACTCTTATCAACGATATAATCTATCACTAACAGGCTTTGAGAGCTTATCTAAATTTTGCTATATCTACAAGTTCTTTTGCATTTTGTGCTGTATCTTGTAATGTTTTAGATCAGATTGTTCTATTTGCAACTTGATAAACTAGTTAGGGATCACATGTGCTTATAAACTACAAAGATTAAGATGTTACCTAATAAAAAATGACACTCTGACTAAATCATTATGATAAGTACGGAGACTAAATTGTTACATACTAAAGGTTAAAATACTAAGTTGTTACACATTTGAAAGTAGATAGACAAAATTGTTACAAACTAGAGAGTTCGGGGGCTGATATTTTTTTCTTTTTCTTCAATGCTATTCATTTTGGCTTGACATGTAGAATTGTTCAAAACTCATTTTCATTCATCTCTCTTACTATGACCTATCCCCTATCCACATGAATGTAAGTATGCATAGATATGATAACCGATTACTCTCTGAAATCTGCTTCTTGTTCTTTGTTTTTTTCTCCTCAAAGAAATGAACCTAAGTATCAAACAGAAACTCCTGAACTGAAGAGGAAGAGGTTTAGCCAAACGATTCTTGATGCTGCAAAGCCATTCCTTTCGGCAAGAGCTGATCGATTCATGCTCGAGTTGGAGCTATTTCTTGCTTCAGGTTTGAACATTGAAGCCTATGATTCAGTTTACTTGCAACGGTTGGGTTGGAACGAGCCTATAGTGCTGAGCGTGGCTAACGAAGAAGATCTTGGACTCAAATCTGTAACTCCATACTTGTATATCTTTGACAATGACCCTGATGATGATTAAACAAGCTCTTACGCATTTTAATTATTTTTGTGAAAGTAAGTCTTGTGTTATCTCCCCACCTTTCAGTACGAATATAATTAAAAGTTGGCATCTGTTAAGCTGTCTGCTTTAACTTTTCGTTGTTGAATTTGAATTTTGAGAATCTTGTAACTACATATTAATACTTCTCTTATTGAGATTGGCTGCTTACTAGAGCCATCAGCCATCAACACAGATGGAAAAACGGTCGGTTCAGGTTTGATTTTAGCCAAAATCGATTTGAGTTAATTGTATAGAAGAGAAACTAAATAGACATTGAATGGAT

mRNA sequence

AAAGTCGACTTGTCGTTTAATCGAGCTGTCGTTCACTGTAAACCCATGTCGGAGAAGTCCATGGAATTGCAGAGCGCTGCGTCAATGGAGATTAAGACAAGCACTTCCACTTCGGACTATACGGACCCTTGCCCGATCTGCCTTGGACCCATAAATCAATCTTCCTATCTCGACAAGTGCTTTCATAACTTTTGTTACAATTGCATTGTACAATGGACCAAAGTGGTTTCTGGGAAGCGCTCCTGCAGACTTTCCTCCATTAAATGTCCTTTATGCAAGACAGAAAGTTCATCTATAATACATGGGTTAGATGGACACCATTTCCAAAGACATTATGTTAATCCAGATTTCCAGGATAGCTTTATCTTATCAAAAGCTCATAAGTATAGATTACAGTGCTACTATACTGAACCAGGTTTCTTGAATGACATATTTGATGTACAGAGGTATTGGAAGTTACAGAAGTATCTCCAGGCAAACCAGTGGCTTGAAGTTTGGTTGAAGAGGGAACTTCAAGCTTTGATTCAGGAAGAAGATGTTGACATAATTATGCATCACTTTGTTGGTTTAATTAATTCATTTTTTCGTAGATATGATAACCGATTACTCTCTGAAATCTGCTTCTTGTTCTTTGTTTTTTTCTCCTCAAAGAAATGAACCTAAGTATCAAACAGAAACTCCTGAACTGAAGAGGAAGAGGTTTAGCCAAACGATTCTTGATGCTGCAAAGCCATTCCTTTCGGCAAGAGCTGATCGATTCATGCTCGAGTTGGAGCTATTTCTTGCTTCAGGTTTGAACATTGAAGCCTATGATTCAGTTTACTTGCAACGGTTGGGTTGGAACGAGCCTATAGTGCTGAGCGTGGCTAACGAAGAAGATCTTGGACTCAAATCTGTAACTCCATACTTGTATATCTTTGACAATGACCCTGATGATGATTAAACAAGCTCTTACGCATTTTAATTATTTTTGTGAAAGTAAGTCTTGTGTTATCTCCCCACCTTTCAGTACGAATATAATTAAAAGTTGGCATCTGTTAAGCTGTCTGCTTTAACTTTTCGTTGTTGAATTTGAATTTTGAGAATCTTGTAACTACATATTAATACTTCTCTTATTGAGATTGGCTGCTTACTAGAGCCATCAGCCATCAACACAGATGGAAAAACGGTCGGTTCAGGTTTGATTTTAGCCAAAATCGATTTGAGTTAATTGTATAGAAGAGAAACTAAATAGACATTGAATGGAT

Coding sequence (CDS)

ATGTCGGAGAAGTCCATGGAATTGCAGAGCGCTGCGTCAATGGAGATTAAGACAAGCACTTCCACTTCGGACTATACGGACCCTTGCCCGATCTGCCTTGGACCCATAAATCAATCTTCCTATCTCGACAAGTGCTTTCATAACTTTTGTTACAATTGCATTGTACAATGGACCAAAGTGGTTTCTGGGAAGCGCTCCTGCAGACTTTCCTCCATTAAATGTCCTTTATGCAAGACAGAAAGTTCATCTATAATACATGGGTTAGATGGACACCATTTCCAAAGACATTATGTTAATCCAGATTTCCAGGATAGCTTTATCTTATCAAAAGCTCATAAGTATAGATTACAGTGCTACTATACTGAACCAGGTTTCTTGAATGACATATTTGATGTACAGAGGTATTGGAAGTTACAGAAGTATCTCCAGGCAAACCAGTGGCTTGAAGTTTGGTTGAAGAGGGAACTTCAAGCTTTGATTCAGGAAGAAGATGTTGACATAATTATGCATCACTTTGTTGGTTTAATTAATTCATTTTTTCGTAGATATGATAACCGATTACTCTCTGAAATCTGCTTCTTGTTCTTTGTTTTTTTCTCCTCAAAGAAATGA

Protein sequence

MSEKSMELQSAASMEIKTSTSTSDYTDPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGKRSCRLSSIKCPLCKTESSSIIHGLDGHHFQRHYVNPDFQDSFILSKAHKYRLQCYYTEPGFLNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQEEDVDIIMHHFVGLINSFFRRYDNRLLSEICFLFFVFFSSKK

Homology

[Close]

BLAST of MELO3C004279 vs. NCBI nr
Match: XP_008454833.1 (PREDICTED: uncharacterized protein LOC103495144 [Cucumis melo] >TYK18320.1 RING zinc finger protein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 386.3 bits (991), Expect = 1.6e-103
Identity = 183/190 (96.32%), Postives = 186/190 (97.89%), Query Frame = 0


Query: 1   MSEKSMELQSAASMEIKTSTSTSDYTDPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV 60
           MSEKSMELQSAASMEIKTSTSTSDYTDPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV
Sbjct: 1   MSEKSMELQSAASMEIKTSTSTSDYTDPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV 60

Query: 61  VSGKRSCRLSSIKCPLCKTESSSIIHGLDGHHFQRHYVNPDFQDSFILSKAHKYRLQCYY 120
           VSGKRSCRLSSIKCPLCKTESSSIIHGLDGHHFQRHYVNPDFQDSFILSKAHKYRLQCYY
Sbjct: 61  VSGKRSCRLSSIKCPLCKTESSSIIHGLDGHHFQRHYVNPDFQDSFILSKAHKYRLQCYY 120

Query: 121 TEPGFLNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQEEDVDIIMHHFVGLINSFF 180
           TEPGFLNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQEEDVDIIMHHFVGLINSFF
Sbjct: 121 TEPGFLNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQEEDVDIIMHHFVGLINSFF 180

Query: 181 RRYDNRLLSE 191
           RR + +  +E
Sbjct: 181 RRNEPKYQTE 190

[Close]

BLAST of MELO3C004279 vs. NCBI nr
Match: XP_004139186.2 (uncharacterized protein LOC101211581 [Cucumis sativus] >KGN60891.1 hypothetical protein Csa_023434 [Cucumis sativus])

HSP 1 Score: 367.5 bits (942), Expect = 7.6e-98
Identity = 173/190 (91.05%), Postives = 181/190 (95.26%), Query Frame = 0


Query: 1   MSEKSMELQSAASMEIKTSTSTSDYTDPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV 60
           MS KSMELQS ASME++T TSTSDYT+PCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV
Sbjct: 1   MSGKSMELQSTASMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV 60

Query: 61  VSGKRSCRLSSIKCPLCKTESSSIIHGLDGHHFQRHYVNPDFQDSFILSKAHKYRLQCYY 120
           VSGKRSC LSSIKCPLCKTESSSIIHGLDGH+FQRHYVNPDFQDSFILSKAH+YRLQCYY
Sbjct: 61  VSGKRSCTLSSIKCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYY 120

Query: 121 TEPGFLNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQEEDVDIIMHHFVGLINSFF 180
           TEPGFLNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQEEDVDIIMHHF+GLINSFF
Sbjct: 121 TEPGFLNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQEEDVDIIMHHFLGLINSFF 180

Query: 181 RRYDNRLLSE 191
           RR +    +E
Sbjct: 181 RRNEPEYQTE 190

[Close]

BLAST of MELO3C004279 vs. NCBI nr
Match: KAA0047955.1 (RING zinc finger protein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 351.3 bits (900), Expect = 5.6e-93
Identity = 180/227 (79.30%), Postives = 184/227 (81.06%), Query Frame = 0


Query: 1   MSEKSMELQSAASMEIKTSTSTSDYTDPCPICLGPINQSSYLDK---------------- 60
           MSEKSMELQSAASMEIKTSTSTSDYTDPCPICLGPINQSSYLD                 
Sbjct: 1   MSEKSMELQSAASMEIKTSTSTSDYTDPCPICLGPINQSSYLDNDPFGNNPLHVTVSTDE 60

Query: 61  ------CFH--------------NFCYNCIVQWTKVVSGKRSCRLSSIKCPLCKTESSSI 120
                  F+              NFCYNCIVQWTKVVSGKRSCRLSSIKCPLCKTESSSI
Sbjct: 61  LRITLFSFYSEILAFSFSPNYQDNFCYNCIVQWTKVVSGKRSCRLSSIKCPLCKTESSSI 120

Query: 121 IHGLDGHHFQRHYVNPDFQDSFILSKAHKYRLQCYYTEPG-FLNDIFDVQRYWKLQKYLQ 180
           IHGLDGHHFQRHYVNPDFQDSFILSKAHKYRLQCYYTEPG FLNDIFDVQRYWKLQKYLQ
Sbjct: 121 IHGLDGHHFQRHYVNPDFQDSFILSKAHKYRLQCYYTEPGRFLNDIFDVQRYWKLQKYLQ 180

Query: 181 ANQWLEVWLKRELQALIQEEDVDIIMHHFVGLINSFFRRYDNRLLSE 191
           ANQWLEVWLKRELQALIQEEDVDIIMHHFVGLINSFFRR + +  +E
Sbjct: 181 ANQWLEVWLKRELQALIQEEDVDIIMHHFVGLINSFFRRNEPKYQTE 227

[Close]

BLAST of MELO3C004279 vs. NCBI nr
Match: XP_038889020.1 (uncharacterized protein LOC120078783 isoform X1 [Benincasa hispida])

HSP 1 Score: 325.9 bits (834), Expect = 2.5e-85
Identity = 155/190 (81.58%), Postives = 168/190 (88.42%), Query Frame = 0


Query: 1   MSEKSMELQSAASMEIKTSTSTSDYTDPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV 60
           MSE++MELQS A +E  TS+S SD T+PCPICLG I Q SYLDKCFH FCYNCI+QWTKV
Sbjct: 1   MSERAMELQSTAPVETATSSSFSDDTNPCPICLGLIIQPSYLDKCFHKFCYNCILQWTKV 60

Query: 61  VSGKRSCRLSSIKCPLCKTESSSIIHGLDGHHFQRHYVNPDFQDSFILSKAHKYRLQCYY 120
           VSGK SC LSSIKCPLCKTESSSIIHGLDGH  QRHYVN DFQDSFILSKAHKYRLQCYY
Sbjct: 61  VSGKHSCMLSSIKCPLCKTESSSIIHGLDGHCLQRHYVNRDFQDSFILSKAHKYRLQCYY 120

Query: 121 TEPGFLNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQEEDVDIIMHHFVGLINSFF 180
           TEPGFL+DIF+VQRYWKL+KYLQANQWLEVWLKRELQALIQEED+DIIMHH +G INSFF
Sbjct: 121 TEPGFLDDIFNVQRYWKLRKYLQANQWLEVWLKRELQALIQEEDIDIIMHHLLGFINSFF 180

Query: 181 RRYDNRLLSE 191
            R + R  +E
Sbjct: 181 SRNEPRYQTE 190

[Close]

BLAST of MELO3C004279 vs. NCBI nr
Match: XP_022150768.1 (uncharacterized protein LOC111018833 [Momordica charantia])

HSP 1 Score: 325.5 bits (833), Expect = 3.3e-85
Identity = 154/190 (81.05%), Postives = 168/190 (88.42%), Query Frame = 0


Query: 1   MSEKSMELQSAASMEIKTSTSTSDYTDPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV 60
           MSE +MELQS A  E++T++S+ D T+PCPICLG I + SYLDKCFH FCYNCIVQWTKV
Sbjct: 1   MSESAMELQSTAQKEMETASSSYDDTNPCPICLGSIIRPSYLDKCFHKFCYNCIVQWTKV 60

Query: 61  VSGKRSCRLSSIKCPLCKTESSSIIHGLDGHHFQRHYVNPDFQDSFILSKAHKYRLQCYY 120
           VSGKRSC LS IKCPLCKTESSSIIHGLDGH FQRHYVN DFQDSFILSKAHKYRLQCYY
Sbjct: 61  VSGKRSCILSPIKCPLCKTESSSIIHGLDGHCFQRHYVNQDFQDSFILSKAHKYRLQCYY 120

Query: 121 TEPGFLNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQEEDVDIIMHHFVGLINSFF 180
           TEPGFL DIF+VQRYWKL+KYLQANQWLEVWLKRELQALIQEEDVDIIMHH +GLIN FF
Sbjct: 121 TEPGFLEDIFNVQRYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGLINPFF 180

Query: 181 RRYDNRLLSE 191
            R + +  +E
Sbjct: 181 SRNEQKYQTE 190

[Close]

BLAST of MELO3C004279 vs. ExPASy Swiss-Prot
Match: Q80Z37 (E3 ubiquitin-protein ligase Topors OS=Mus musculus OX=10090 GN=Topors PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.1e-10
Identity = 39/133 (29.32%), Postives = 60/133 (45.11%), Query Frame = 0


Query: 5   SMELQSAASMEI-------KTSTSTSDYTDP--------CPICLGPINQSSYLDKCFHNF 64
           S E+ ++A+ E        K  TS    T P        CPICL   +  SYLD+C H F
Sbjct: 65  SSEIMASAAKEFKMDNFSPKAGTSKLQQTVPADASPDSKCPICLDRFDNVSYLDRCLHKF 124

Query: 65  CYNCIVQWTKVVSGKRSCRLSSIKCPLCKTESSSIIHGLDGH-HFQRHYVNPDFQDSFIL 122
           C+ C+ +W+K          +  +CPLCK    SI H +     F+ + + P +  SF  
Sbjct: 125 CFRCVQEWSK----------NKAECPLCKQPFDSIFHSVRAEDDFKEYVLRPSYNGSFTN 184

[Close]

BLAST of MELO3C004279 vs. ExPASy Swiss-Prot
Match: Q9NS56 (E3 ubiquitin-protein ligase Topors OS=Homo sapiens OX=9606 GN=TOPORS PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.7e-10
Identity = 39/128 (30.47%), Postives = 59/128 (46.09%), Query Frame = 0


Query: 5   SMELQSAASMEI-------KTSTSTSDYTDP--------CPICLGPINQSSYLDKCFHNF 64
           S E+ ++A+ E        K  TS    T P        CPICL   +  SYLD+C H F
Sbjct: 64  SSEIMASAAKEFKMDNFSPKAGTSKLQQTVPADASPDSKCPICLDRFDNVSYLDRCLHKF 123

Query: 65  CYNCIVQWTKVVSGKRSCRLSSIKCPLCKTESSSIIHGLDGH-HFQRHYVNPDFQDSFIL 116
           C+ C+ +W+K          +  +CPLCK    SI H +     F+ + + P +  SF+ 
Sbjct: 124 CFRCVQEWSK----------NKAECPLCKQPFDSIFHSVRAEDDFKEYVLRPSYNGSFVT 181

[Close]

BLAST of MELO3C004279 vs. ExPASy Swiss-Prot
Match: Q9V8P9 (E3 ubiquitin-protein ligase Topors OS=Drosophila melanogaster OX=7227 GN=Topors PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.2e-05
Identity = 23/79 (29.11%), Postives = 37/79 (46.84%), Query Frame = 0


Query: 10  SAASMEIKTSTSTSDYTDPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGKRSCRL 69
           SA++ E   +   +     C ICL    +  + D C H FC+ C+ +W+K+         
Sbjct: 83  SASAAEENGTVERNSPPPNCAICLSRCRRKCFTDSCMHQFCFKCLCEWSKI--------- 142

Query: 70  SSIKCPLCKTESSSIIHGL 89
              +CPLCK    +IIH +
Sbjct: 143 -KPECPLCKQPFRTIIHNV 151

[Close]

BLAST of MELO3C004279 vs. ExPASy Swiss-Prot
Match: Q09268 (Uncharacterized RING finger protein C32D5.10 OS=Caenorhabditis elegans OX=6239 GN=C32D5.10 PE=4 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 5.1e-04
Identity = 22/58 (37.93%), Postives = 28/58 (48.28%), Query Frame = 0


Query: 27 DPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGKRSCRLSSIKCPLCKTESSSI 85
          + C +C   I  ++ L  C H FCY+CIV W    SG          CP+CKT  S I
Sbjct: 39 EECSVCKNEIIDTTSLSDCCHEFCYDCIVGWLTKGSGP--------FCPMCKTPVSFI 88

[Close]

BLAST of MELO3C004279 vs. ExPASy TrEMBL
Match: A0A5D3D454 (RING zinc finger protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00310 PE=4 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 7.7e-104
Identity = 183/190 (96.32%), Postives = 186/190 (97.89%), Query Frame = 0


Query: 1   MSEKSMELQSAASMEIKTSTSTSDYTDPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV 60
           MSEKSMELQSAASMEIKTSTSTSDYTDPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV
Sbjct: 1   MSEKSMELQSAASMEIKTSTSTSDYTDPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV 60

Query: 61  VSGKRSCRLSSIKCPLCKTESSSIIHGLDGHHFQRHYVNPDFQDSFILSKAHKYRLQCYY 120
           VSGKRSCRLSSIKCPLCKTESSSIIHGLDGHHFQRHYVNPDFQDSFILSKAHKYRLQCYY
Sbjct: 61  VSGKRSCRLSSIKCPLCKTESSSIIHGLDGHHFQRHYVNPDFQDSFILSKAHKYRLQCYY 120

Query: 121 TEPGFLNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQEEDVDIIMHHFVGLINSFF 180
           TEPGFLNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQEEDVDIIMHHFVGLINSFF
Sbjct: 121 TEPGFLNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQEEDVDIIMHHFVGLINSFF 180

Query: 181 RRYDNRLLSE 191
           RR + +  +E
Sbjct: 181 RRNEPKYQTE 190

[Close]

BLAST of MELO3C004279 vs. ExPASy TrEMBL
Match: A0A1S3BZL4 (uncharacterized protein LOC103495144 OS=Cucumis melo OX=3656 GN=LOC103495144 PE=4 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 7.7e-104
Identity = 183/190 (96.32%), Postives = 186/190 (97.89%), Query Frame = 0


Query: 1   MSEKSMELQSAASMEIKTSTSTSDYTDPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV 60
           MSEKSMELQSAASMEIKTSTSTSDYTDPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV
Sbjct: 1   MSEKSMELQSAASMEIKTSTSTSDYTDPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV 60

Query: 61  VSGKRSCRLSSIKCPLCKTESSSIIHGLDGHHFQRHYVNPDFQDSFILSKAHKYRLQCYY 120
           VSGKRSCRLSSIKCPLCKTESSSIIHGLDGHHFQRHYVNPDFQDSFILSKAHKYRLQCYY
Sbjct: 61  VSGKRSCRLSSIKCPLCKTESSSIIHGLDGHHFQRHYVNPDFQDSFILSKAHKYRLQCYY 120

Query: 121 TEPGFLNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQEEDVDIIMHHFVGLINSFF 180
           TEPGFLNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQEEDVDIIMHHFVGLINSFF
Sbjct: 121 TEPGFLNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQEEDVDIIMHHFVGLINSFF 180

Query: 181 RRYDNRLLSE 191
           RR + +  +E
Sbjct: 181 RRNEPKYQTE 190

[Close]

BLAST of MELO3C004279 vs. ExPASy TrEMBL
Match: A0A0A0LLN5 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G021620 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 3.7e-98
Identity = 173/190 (91.05%), Postives = 181/190 (95.26%), Query Frame = 0


Query: 1   MSEKSMELQSAASMEIKTSTSTSDYTDPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV 60
           MS KSMELQS ASME++T TSTSDYT+PCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV
Sbjct: 1   MSGKSMELQSTASMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV 60

Query: 61  VSGKRSCRLSSIKCPLCKTESSSIIHGLDGHHFQRHYVNPDFQDSFILSKAHKYRLQCYY 120
           VSGKRSC LSSIKCPLCKTESSSIIHGLDGH+FQRHYVNPDFQDSFILSKAH+YRLQCYY
Sbjct: 61  VSGKRSCTLSSIKCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYY 120

Query: 121 TEPGFLNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQEEDVDIIMHHFVGLINSFF 180
           TEPGFLNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQEEDVDIIMHHF+GLINSFF
Sbjct: 121 TEPGFLNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQEEDVDIIMHHFLGLINSFF 180

Query: 181 RRYDNRLLSE 191
           RR +    +E
Sbjct: 181 RRNEPEYQTE 190

[Close]

BLAST of MELO3C004279 vs. ExPASy TrEMBL
Match: A0A5A7U2Q2 (RING zinc finger protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00150 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 2.7e-93
Identity = 180/227 (79.30%), Postives = 184/227 (81.06%), Query Frame = 0


Query: 1   MSEKSMELQSAASMEIKTSTSTSDYTDPCPICLGPINQSSYLDK---------------- 60
           MSEKSMELQSAASMEIKTSTSTSDYTDPCPICLGPINQSSYLD                 
Sbjct: 1   MSEKSMELQSAASMEIKTSTSTSDYTDPCPICLGPINQSSYLDNDPFGNNPLHVTVSTDE 60

Query: 61  ------CFH--------------NFCYNCIVQWTKVVSGKRSCRLSSIKCPLCKTESSSI 120
                  F+              NFCYNCIVQWTKVVSGKRSCRLSSIKCPLCKTESSSI
Sbjct: 61  LRITLFSFYSEILAFSFSPNYQDNFCYNCIVQWTKVVSGKRSCRLSSIKCPLCKTESSSI 120

Query: 121 IHGLDGHHFQRHYVNPDFQDSFILSKAHKYRLQCYYTEPG-FLNDIFDVQRYWKLQKYLQ 180
           IHGLDGHHFQRHYVNPDFQDSFILSKAHKYRLQCYYTEPG FLNDIFDVQRYWKLQKYLQ
Sbjct: 121 IHGLDGHHFQRHYVNPDFQDSFILSKAHKYRLQCYYTEPGRFLNDIFDVQRYWKLQKYLQ 180

Query: 181 ANQWLEVWLKRELQALIQEEDVDIIMHHFVGLINSFFRRYDNRLLSE 191
           ANQWLEVWLKRELQALIQEEDVDIIMHHFVGLINSFFRR + +  +E
Sbjct: 181 ANQWLEVWLKRELQALIQEEDVDIIMHHFVGLINSFFRRNEPKYQTE 227

[Close]

BLAST of MELO3C004279 vs. ExPASy TrEMBL
Match: A0A6J1DAB4 (uncharacterized protein LOC111018833 OS=Momordica charantia OX=3673 GN=LOC111018833 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.6e-85
Identity = 154/190 (81.05%), Postives = 168/190 (88.42%), Query Frame = 0


Query: 1   MSEKSMELQSAASMEIKTSTSTSDYTDPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV 60
           MSE +MELQS A  E++T++S+ D T+PCPICLG I + SYLDKCFH FCYNCIVQWTKV
Sbjct: 1   MSESAMELQSTAQKEMETASSSYDDTNPCPICLGSIIRPSYLDKCFHKFCYNCIVQWTKV 60

Query: 61  VSGKRSCRLSSIKCPLCKTESSSIIHGLDGHHFQRHYVNPDFQDSFILSKAHKYRLQCYY 120
           VSGKRSC LS IKCPLCKTESSSIIHGLDGH FQRHYVN DFQDSFILSKAHKYRLQCYY
Sbjct: 61  VSGKRSCILSPIKCPLCKTESSSIIHGLDGHCFQRHYVNQDFQDSFILSKAHKYRLQCYY 120

Query: 121 TEPGFLNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQEEDVDIIMHHFVGLINSFF 180
           TEPGFL DIF+VQRYWKL+KYLQANQWLEVWLKRELQALIQEEDVDIIMHH +GLIN FF
Sbjct: 121 TEPGFLEDIFNVQRYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGLINPFF 180

Query: 181 RRYDNRLLSE 191
            R + +  +E
Sbjct: 181 SRNEQKYQTE 190

[Close]

BLAST of MELO3C004279 vs. TAIR 10
Match: AT3G05250.1 (RING/U-box superfamily protein )

HSP 1 Score: 233.8 bits (595), Expect = 1.2e-61
Identity = 105/168 (62.50%), Postives = 129/168 (76.79%), Query Frame = 0


Query: 23  SDYTDPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGKRSCRLSSIKCPLCKTESS 82
           SD+ DPCPICLG   + SYLD CFH FC+NCI QW KVVS K S + SS+ CPLCKTE+ 
Sbjct: 17  SDF-DPCPICLGQFLRESYLDTCFHKFCFNCIKQWIKVVSSKASKQRSSVTCPLCKTENL 76

Query: 83  SIIHGLDGHHFQRHYVNPDFQDSFILSKAHKYRLQCYYTEPGFLNDIFDVQRYWKLQKYL 142
           SIIH  DG  F+RHY++P+  D F+L+K  +YRLQCYYTE GFL D+FDV R+WKLQK+L
Sbjct: 77  SIIHNYDGCSFERHYIDPNIPDGFVLTKEQRYRLQCYYTESGFLADVFDVARFWKLQKFL 136

Query: 143 QANQWLEVWLKRELQALIQEEDVDIIMHHFVGLINSFFRRYDNRLLSE 191
           Q N+ LE WL+RELQAL+QEEDVDI++HH VG++ SF +R   R   E
Sbjct: 137 QPNRCLEAWLRRELQALMQEEDVDIVLHHLVGVMESFCKRIKQRRKQE 183

[Close]

BLAST of MELO3C004279 vs. TAIR 10
Match: AT3G05670.1 (RING/U-box protein )

HSP 1 Score: 43.1 bits (100), Expect = 3.1e-04
Identity = 22/59 (37.29%), Postives = 29/59 (49.15%), Query Frame = 0


Query: 29  CPICLGPINQ---SSYLDKCFHNFCYNCIVQWTKVVSGKRSCRLSSIKCPLCKTESSSI 85
           C ICL   +       LD C H FC+ CI++W+KV S          +CPLCK    +I
Sbjct: 413 CGICLSEEDMRRLKGTLDCCSHYFCFTCIMEWSKVES----------RCPLCKQRFRTI 461

The following BLAST results are available for this feature:

BLAST of MELO3C004279 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454833.1	1.6e-103	96.32	PREDICTED: uncharacterized protein LOC103495144 [Cucumis melo] >TYK18320.1 RING ...	[more]
XP_004139186.2	7.6e-98	91.05	uncharacterized protein LOC101211581 [Cucumis sativus] >KGN60891.1 hypothetical ...	[more]
KAA0047955.1	5.6e-93	79.30	RING zinc finger protein-like protein [Cucumis melo var. makuwa]	[more]
XP_038889020.1	2.5e-85	81.58	uncharacterized protein LOC120078783 isoform X1 [Benincasa hispida]	[more]
XP_022150768.1	3.3e-85	81.05	uncharacterized protein LOC111018833 [Momordica charantia]	[more]

BLAST of MELO3C004279 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q80Z37	2.1e-10	29.32	E3 ubiquitin-protein ligase Topors OS=Mus musculus OX=10090 GN=Topors PE=1 SV=1	[more]
Q9NS56	4.7e-10	30.47	E3 ubiquitin-protein ligase Topors OS=Homo sapiens OX=9606 GN=TOPORS PE=1 SV=1	[more]
Q9V8P9	1.2e-05	29.11	E3 ubiquitin-protein ligase Topors OS=Drosophila melanogaster OX=7227 GN=Topors ...	[more]
Q09268	5.1e-04	37.93	Uncharacterized RING finger protein C32D5.10 OS=Caenorhabditis elegans OX=6239 G...	[more]

BLAST of MELO3C004279 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D454	7.7e-104	96.32	RING zinc finger protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3BZL4	7.7e-104	96.32	uncharacterized protein LOC103495144 OS=Cucumis melo OX=3656 GN=LOC103495144 PE=...	[more]
A0A0A0LLN5	3.7e-98	91.05	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G021620 P...	[more]
A0A5A7U2Q2	2.7e-93	79.30	RING zinc finger protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A6J1DAB4	1.6e-85	81.05	uncharacterized protein LOC111018833 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]

BLAST of MELO3C004279 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05250.1	1.2e-61	62.50	RING/U-box superfamily protein	[more]
AT3G05670.1	3.1e-04	37.29	RING/U-box protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 29..77 e-value: 6.8E-5 score: 32.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 29..78 score: 11.95817
IPR018957	Zinc finger, C3HC4 RING-type	PFAM	PF00097	zf-C3HC4	coord: 29..77 e-value: 2.4E-8 score: 33.7
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 23..98 e-value: 4.9E-12 score: 47.0
None	No IPR available	PANTHER	PTHR47692	RING/U-BOX SUPERFAMILY PROTEIN	coord: 9..184
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 25..89
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 45..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004279.1	MELO3C004279.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding