MELO3C004163.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C004163.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionTrafficking protein particle complex subunit
Locationchr05: 25257243 .. 25259325 (+)
RNA-Seq ExpressionMELO3C004163.jh1
SyntenyMELO3C004163.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCGCCACTAGCAACCAGTCTCGCTCCCCCGAAACTCTCCCCTTAAGATCGGCGTTCACTGAAACTGGATTTTGCGCTTTCCAATCTACGTTCTTCCCCACACTTAATCCCTATTCACAACCATATTTATACTCATTTCCTTCATAATTCTTCAAAATTTGGGTAGATCGAAAGACGATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGTTTGATCTTCTACAAGGTAATCAACCAATTCAAACTACCTGGTCATGCAATTGGAAACACAAATTTCCGTTAATTCCTACCTGGATGTAGAATTTTTATGCTTTATTTCGTTTCTGGGAACCCCAATCAAGATTTCAGTTTTTTCATCTCATGTTGCAAAGGTATATAGTTCGGTATGTGGGTATTCTATATGGATTGAGCCTCTTATTGGGTTTGTTTTAAAATTTTAGGATTATGGGTCTGCTGGACGGATGGATACGAACGATAGTTTGAGAGTGGCGAGTTTGTGGCATTCTATGCATGCCATTTCCCAGCAGCTTTCGCCTATAGCTGGTTGTTCGGGTGTTGAACTTCTTGAAGCTGACACTTTCGATCTCCATTGCTTCCAGTCACTCACTGGTACGTTTTTCCTTCCTGTATTTTGTTTACTTTTTTGCTTCAAACACATGGTTTCTGCCTCAAAATCGGTGATTCCAAAGATAAGCAGTTAAGTGAATCCCAAAATGGGAAAGCACAGCTGAAGTTCTAGAAACGTTATTGATTTTTGTTTAGTTTCTTATTGAGTTCGAGAATTTATGAGAATGGGGATTCAAACATAACCTTTGGTTGAAATTATTGTGCCTTAATTGGTTGAGTTTTGCTTGATTGTAAAAATGATATTGATGCTCTAGTTGAAAAATGCAGCCTTTTTTTTTTTTTTTTTAATCATGCTATAGTCTCCATAGATATGAGAGTGGGGATTCAAATATAAATTTTGGTTATTGAAATTGATGTTTGTTCAGTTTCTTGTTTCAAGTTTAAGAATGTATGAGAGTGGTGATTCAAACATAAATTTTGGTTGAGATTATTATGTCTTGATTAGTTGAGTTGTACTCAGATAGGTAGAAATGGCATTAATCCTTTATTAGAAAAATGTACCTTTTTATAGCCATACTAATATACTATAGTCTCCTTCGCAAATATTTTTGTGCTGTCAAACTTTTGGAGGAAAAAACTAGCATGTGGTGCAACAGAAACCACAAAATTAGTTTTTTGAAATCTCGATTCTGTAACTGTTTGTGTTTAATCTTTTGTCATTACACTTTGCTGCTTGCATAGGGGGAGGAGAGTTAAAGATTGTTTTGATATGGATATGAATGGCTTTTGGTGTGGAGGATTAATAATTTCTTCACTATCAACCAACCTACATAAGAAATAGAAATGCTTGTTCCGTAGTATAATTTTATATTTCCTTGTTCAAATTTTCTTTTTATCTCTGCAAAGTCTCACGGCAGTAACTTCATAAAGAACCAGAATCATGGATGGAAATTGTCTGTTGCAGGGACAAAGTTTTTTGTTGTGTGTGAGCCTGGGACTCAGCACATGGAGAGTCTTCTGAAGTACATTTATGAACTATACACAGATTTTGTCTTGAAGAATCCATTCTATGAGATGGAGATGCCTATACGGTGCGAGCTCTTTGACATCAACCTAGCGCAGGCAGTGCAAAAAGAACGTGTTGCTTTGCTTGGCCGATGAGCTTAGGATATCCTTCATTTTGTCAGTATTAAATTCAAGAAAAGGAGGCTCATGATATTATTGTGCAAAATACTTGATAATTTACCATCCTTAATGCTAAATGTACTCCGTTCCTAGTGAATCACGTGAGATTTGGTGGAAAAAGAATGTTTCTTTTCATTGTTCATCAGGAAGTCAGGGTTAATTTTATACCCATTTTTTGTCAATTGTATACAGATGTGGATCCAGTTAAATGACAGAGCAATGTTATAAGCTTTTGGGATATGGTTAATTTAAGCAGCCAAAGTATTTACATTTTACTTCGACCTATTTAGATGAATGAAAGCATCAACTTCATGATGTT

mRNA sequence

ATCCGCCACTAGCAACCAGTCTCGCTCCCCCGAAACTCTCCCCTTAAGATCGGCGTTCACTGAAACTGGATTTTGCGCTTTCCAATCTACGTTCTTCCCCACACTTAATCCCTATTCACAACCATATTTATACTCATTTCCTTCATAATTCTTCAAAATTTGGGTAGATCGAAAGACGATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGTTTGATCTTCTACAAGGATTATGGGTCTGCTGGACGGATGGATACGAACGATAGTTTGAGAGTGGCGAGTTTGTGGCATTCTATGCATGCCATTTCCCAGCAGCTTTCGCCTATAGCTGGTTGTTCGGGTGTTGAACTTCTTGAAGCTGACACTTTCGATCTCCATTGCTTCCAGTCACTCACTGGGACAAAGTTTTTTGTTGTGTGTGAGCCTGGGACTCAGCACATGGAGAGTCTTCTGAAGTACATTTATGAACTATACACAGATTTTGTCTTGAAGAATCCATTCTATGAGATGGAGATGCCTATACGGTGCGAGCTCTTTGACATCAACCTAGCGCAGGCAGTGCAAAAAGAACGTGTTGCTTTGCTTGGCCGATGAGCTTAGGATATCCTTCATTTTGTCAGTATTAAATTCAAGAAAAGGAGGCTCATGATATTATTGTGCAAAATACTTGATAATTTACCATCCTTAATGCTAAATGTACTCCGTTCCTAGTGAATCACGTGAGATTTGGTGGAAAAAGAATGTTTCTTTTCATTGTTCATCAGGAAGTCAGGGTTAATTTTATACCCATTTTTTGTCAATTGTATACAGATGTGGATCCAGTTAAATGACAGAGCAATGTTATAAGCTTTTGGGATATGGTTAATTTAAGCAGCCAAAGTATTTACATTTTACTTCGACCTATTTAGATGAATGAAAGCATCAACTTCATGATGTT

Coding sequence (CDS)

ATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGTTTGATCTTCTACAAGGATTATGGGTCTGCTGGACGGATGGATACGAACGATAGTTTGAGAGTGGCGAGTTTGTGGCATTCTATGCATGCCATTTCCCAGCAGCTTTCGCCTATAGCTGGTTGTTCGGGTGTTGAACTTCTTGAAGCTGACACTTTCGATCTCCATTGCTTCCAGTCACTCACTGGGACAAAGTTTTTTGTTGTGTGTGAGCCTGGGACTCAGCACATGGAGAGTCTTCTGAAGTACATTTATGAACTATACACAGATTTTGTCTTGAAGAATCCATTCTATGAGATGGAGATGCCTATACGGTGCGAGCTCTTTGACATCAACCTAGCGCAGGCAGTGCAAAAAGAACGTGTTGCTTTGCTTGGCCGATGA

Protein sequence

MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLAQAVQKERVALLGR
Homology
[Close]
BLAST of MELO3C004163.jh1 vs. NCBI nr
Match: XP_008453237.1 (PREDICTED: trafficking protein particle complex subunit 4 [Cucumis melo] >KAA0048113.1 trafficking protein particle complex subunit 4 [Cucumis melo var. makuwa] >TYJ96439.1 trafficking protein particle complex subunit 4 [Cucumis melo var. makuwa])

HSP 1 Score: 287 bits (734), Expect = 1.01e-97
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0 

Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKERVALLGR 141
           ELFDINLAQAVQKERVALLGR
Sbjct: 121 ELFDINLAQAVQKERVALLGR 141

[Close]
BLAST of MELO3C004163.jh1 vs. NCBI nr
Match: XP_004144741.1 (trafficking protein particle complex subunit 4 [Cucumis sativus] >XP_038889173.1 trafficking protein particle complex subunit 4 [Benincasa hispida])

HSP 1 Score: 286 bits (731), Expect = 2.88e-97
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = 0 

Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKERVALLGR 141
           ELFDINLAQAVQK+RVALLGR
Sbjct: 121 ELFDINLAQAVQKDRVALLGR 141

[Close]
BLAST of MELO3C004163.jh1 vs. NCBI nr
Match: XP_022156391.1 (trafficking protein particle complex subunit 4 [Momordica charantia] >XP_022156392.1 trafficking protein particle complex subunit 4 [Momordica charantia] >XP_022156393.1 trafficking protein particle complex subunit 4 [Momordica charantia])

HSP 1 Score: 280 bits (716), Expect = 5.60e-95
Identity = 135/141 (95.74%), Postives = 139/141 (98.58%), Query Frame = 0 

Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPI+GCSG+E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKERVALLGR 141
           ELFDINL+QAVQK+RVAL GR
Sbjct: 121 ELFDINLSQAVQKDRVALFGR 141

[Close]
BLAST of MELO3C004163.jh1 vs. NCBI nr
Match: XP_041018648.1 (trafficking protein particle complex subunit 4 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 277 bits (709), Expect = 6.54e-94
Identity = 134/141 (95.04%), Postives = 138/141 (97.87%), Query Frame = 0 

Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSP+AGCSG+E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVAGCSGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLK IYELYTD+VLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKAIYELYTDYVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKERVALLGR 141
           ELFDINL QAVQK+RVALLGR
Sbjct: 121 ELFDINLTQAVQKDRVALLGR 141

[Close]
BLAST of MELO3C004163.jh1 vs. NCBI nr
Match: XP_031132245.1 (trafficking protein particle complex subunit 4-like [Ipomoea triloba])

HSP 1 Score: 276 bits (707), Expect = 1.32e-93
Identity = 133/141 (94.33%), Postives = 138/141 (97.87%), Query Frame = 0 

Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLR+ASLWHSMHAISQQLSPI GCSG+E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRLASLWHSMHAISQQLSPIMGCSGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LL+ADTFDLHCFQSLTGTKFFVVCEPGTQHME LLKYIYELYTD+VLKNPFYEMEMPIRC
Sbjct: 61  LLQADTFDLHCFQSLTGTKFFVVCEPGTQHMEPLLKYIYELYTDYVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKERVALLGR 141
           ELFDINL QAVQK+RVALLGR
Sbjct: 121 ELFDINLGQAVQKDRVALLGR 141

[Close]
BLAST of MELO3C004163.jh1 vs. ExPASy Swiss-Prot
Match: Q54UU1 (Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum OX=44689 GN=trappc4 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.3e-34
Identity = 65/125 (52.00%), Postives = 93/125 (74.40%), Query Frame = 0 

Query: 4   IYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAG-CSGVELL 63
           I S+YI+NK+G LI+  D+G+  ++  N  +R+ S +HS+HAI+  LSP++G  SG+E++
Sbjct: 3   INSIYILNKAGTLIYQNDFGNTEKLSHNSYIRLGSTFHSLHAIASNLSPVSGSSSGIEVI 62

Query: 64  EADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRCEL 123
           E + F L CFQ+ TG KF+V+ +P  Q +E LL  +YELYTD+VLKNPFYE+EM IRC+L
Sbjct: 63  ETEAFKLQCFQTHTGIKFYVIADPNHQQLEELLHGVYELYTDYVLKNPFYEIEMQIRCDL 122

Query: 124 FDINL 128
           FD  L
Sbjct: 123 FDYKL 127

[Close]
BLAST of MELO3C004163.jh1 vs. ExPASy Swiss-Prot
Match: Q2TBL9 (Trafficking protein particle complex subunit 4 OS=Bos taurus OX=9913 GN=TRAPPC4 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.0e-31
Identity = 62/106 (58.49%), Postives = 82/106 (77.36%), Query Frame = 0 

Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SG+E+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 87  GTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLAQAVQ 133
               ++SLL+ IYE+Y+DF LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]
BLAST of MELO3C004163.jh1 vs. ExPASy Swiss-Prot
Match: Q9ES56 (Trafficking protein particle complex subunit 4 OS=Mus musculus OX=10090 GN=Trappc4 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.0e-31
Identity = 62/106 (58.49%), Postives = 82/106 (77.36%), Query Frame = 0 

Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SG+E+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 87  GTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLAQAVQ 133
               ++SLL+ IYE+Y+DF LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]
BLAST of MELO3C004163.jh1 vs. ExPASy Swiss-Prot
Match: Q69BT7 (Trafficking protein particle complex subunit 4 OS=Rattus norvegicus OX=10116 GN=Trappc4 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.0e-31
Identity = 62/106 (58.49%), Postives = 82/106 (77.36%), Query Frame = 0 

Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SG+E+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 87  GTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLAQAVQ 133
               ++SLL+ IYE+Y+DF LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]
BLAST of MELO3C004163.jh1 vs. ExPASy Swiss-Prot
Match: Q9Y296 (Trafficking protein particle complex subunit 4 OS=Homo sapiens OX=9606 GN=TRAPPC4 PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.4e-31
Identity = 61/106 (57.55%), Postives = 82/106 (77.36%), Query Frame = 0 

Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SG+E+LE DTF LHC+Q+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADP 161

Query: 87  GTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLAQAVQ 133
               ++SLL+ IYE+Y+DF LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]
BLAST of MELO3C004163.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TWY1 (Trafficking protein particle complex subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00730 PE=3 SV=1)

HSP 1 Score: 287 bits (734), Expect = 4.87e-98
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0 

Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKERVALLGR 141
           ELFDINLAQAVQKERVALLGR
Sbjct: 121 ELFDINLAQAVQKERVALLGR 141

[Close]
BLAST of MELO3C004163.jh1 vs. ExPASy TrEMBL
Match: A0A1S3BVQ7 (Trafficking protein particle complex subunit OS=Cucumis melo OX=3656 GN=LOC103494018 PE=3 SV=1)

HSP 1 Score: 287 bits (734), Expect = 4.87e-98
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0 

Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKERVALLGR 141
           ELFDINLAQAVQKERVALLGR
Sbjct: 121 ELFDINLAQAVQKERVALLGR 141

[Close]
BLAST of MELO3C004163.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LJ20 (Trafficking protein particle complex subunit OS=Cucumis sativus OX=3659 GN=Csa_2G034720 PE=3 SV=1)

HSP 1 Score: 286 bits (731), Expect = 1.40e-97
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = 0 

Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKERVALLGR 141
           ELFDINLAQAVQK+RVALLGR
Sbjct: 121 ELFDINLAQAVQKDRVALLGR 141

[Close]
BLAST of MELO3C004163.jh1 vs. ExPASy TrEMBL
Match: A0A6J1DUU4 (Trafficking protein particle complex subunit OS=Momordica charantia OX=3673 GN=LOC111023297 PE=3 SV=1)

HSP 1 Score: 280 bits (716), Expect = 2.71e-95
Identity = 135/141 (95.74%), Postives = 139/141 (98.58%), Query Frame = 0 

Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPI+GCSG+E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKERVALLGR 141
           ELFDINL+QAVQK+RVAL GR
Sbjct: 121 ELFDINLSQAVQKDRVALFGR 141

[Close]
BLAST of MELO3C004163.jh1 vs. ExPASy TrEMBL
Match: A0A6J1KK16 (Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111493886 PE=3 SV=1)

HSP 1 Score: 276 bits (706), Expect = 9.08e-94
Identity = 134/141 (95.04%), Postives = 137/141 (97.16%), Query Frame = 0 

Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPI+GCSG E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGT HME LLKYIYELYTD+VLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKERVALLGR 141
           ELFDINL QAVQK+RVALLGR
Sbjct: 121 ELFDINLVQAVQKDRVALLGR 141

[Close]
BLAST of MELO3C004163.jh1 vs. TAIR 10
Match: AT5G02280.1 (SNARE-like superfamily protein )

HSP 1 Score: 266.9 bits (681), Expect = 9.0e-72
Identity = 127/141 (90.07%), Postives = 134/141 (95.04%), Query Frame = 0 

Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKD G+ GRMDTNDSLRVASLWHSMHAISQQLSP+ GCSG+E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDCGTKGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSL GTKFFVVCEPGT HMESLL+YIYELYTD+VLKNPFYE+EMPIRC
Sbjct: 61  LLEADTFDLHCFQSLPGTKFFVVCEPGTPHMESLLRYIYELYTDYVLKNPFYEIEMPIRC 120

Query: 121 ELFDINLAQAVQKERVALLGR 142
           ELFDINL QAVQ +RVALLGR
Sbjct: 121 ELFDINLTQAVQSDRVALLGR 141

[Close]
BLAST of MELO3C004163.jh1 vs. TAIR 10
Match: AT1G51160.1 (SNARE-like superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 6.8e-11
Identity = 39/144 (27.08%), Postives = 68/144 (47.22%), Query Frame = 0 

Query: 5   YSLYIINKSGGLIFYKDYGSAGRM--DTNDSLRVASLWHSMHAISQQLSPI--------- 64
           + +Y+ N++G  + YK++           D   +  L  S+ +++ ++ P+         
Sbjct: 24  HMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGLLFSLKSLTAKMDPVNADKGNLGV 83

Query: 65  -----AGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLK 124
                 GCS       +T+ L   ++ +G K  +V  P T  +   LKYIY LY ++V+K
Sbjct: 84  PQLPGQGCS-FHSFRTNTYKLSFMETPSGIKIILVTHPKTGDLRESLKYIYSLYVEYVVK 143

Query: 125 NPFYEMEMPIRCELFDINLAQAVQ 133
           NP Y    PI+ ELF+  L Q V+
Sbjct: 144 NPIYSPGSPIKSELFNTALDQYVR 166

[Close]
BLAST of MELO3C004163.jh1 vs. TAIR 10
Match: AT1G51160.2 (SNARE-like superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 6.8e-11
Identity = 39/144 (27.08%), Postives = 68/144 (47.22%), Query Frame = 0 

Query: 5   YSLYIINKSGGLIFYKDYGSAGRM--DTNDSLRVASLWHSMHAISQQLSPI--------- 64
           + +Y+ N++G  + YK++           D   +  L  S+ +++ ++ P+         
Sbjct: 24  HMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGLLFSLKSLTAKMDPVNADKGNLGV 83

Query: 65  -----AGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLK 124
                 GCS       +T+ L   ++ +G K  +V  P T  +   LKYIY LY ++V+K
Sbjct: 84  PQLPGQGCS-FHSFRTNTYKLSFMETPSGIKIILVTHPKTGDLRESLKYIYSLYVEYVVK 143

Query: 125 NPFYEMEMPIRCELFDINLAQAVQ 133
           NP Y    PI+ ELF+  L Q V+
Sbjct: 144 NPIYSPGSPIKSELFNTALDQYVR 166

The following BLAST results are available for this feature:
BLAST of MELO3C004163.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008453237.11.01e-97100.00PREDICTED: trafficking protein particle complex subunit 4 [Cucumis melo] >KAA004... [more]
XP_004144741.12.88e-9799.29trafficking protein particle complex subunit 4 [Cucumis sativus] >XP_038889173.1... [more]
XP_022156391.15.60e-9595.74trafficking protein particle complex subunit 4 [Momordica charantia] >XP_0221563... [more]
XP_041018648.16.54e-9495.04trafficking protein particle complex subunit 4 [Juglans microcarpa x Juglans reg... [more]
XP_031132245.11.32e-9394.33trafficking protein particle complex subunit 4-like [Ipomoea triloba][more]
BLAST of MELO3C004163.jh1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q54UU14.3e-3452.00Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum OX=44... [more]
Q2TBL92.0e-3158.49Trafficking protein particle complex subunit 4 OS=Bos taurus OX=9913 GN=TRAPPC4 ... [more]
Q9ES562.0e-3158.49Trafficking protein particle complex subunit 4 OS=Mus musculus OX=10090 GN=Trapp... [more]
Q69BT72.0e-3158.49Trafficking protein particle complex subunit 4 OS=Rattus norvegicus OX=10116 GN=... [more]
Q9Y2964.4e-3157.55Trafficking protein particle complex subunit 4 OS=Homo sapiens OX=9606 GN=TRAPPC... [more]
BLAST of MELO3C004163.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TWY14.87e-98100.00Trafficking protein particle complex subunit OS=Cucumis melo var. makuwa OX=1194... [more]
A0A1S3BVQ74.87e-98100.00Trafficking protein particle complex subunit OS=Cucumis melo OX=3656 GN=LOC10349... [more]
A0A0A0LJ201.40e-9799.29Trafficking protein particle complex subunit OS=Cucumis sativus OX=3659 GN=Csa_2... [more]
A0A6J1DUU42.71e-9595.74Trafficking protein particle complex subunit OS=Momordica charantia OX=3673 GN=L... [more]
A0A6J1KK169.08e-9495.04Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
BLAST of MELO3C004163.jh1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G02280.19.0e-7290.07SNARE-like superfamily protein [more]
AT1G51160.16.8e-1127.08SNARE-like superfamily protein [more]
AT1G51160.26.8e-1127.08SNARE-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007233Trafficking protein particle complex subunitSMARTSM01399Sybindin_2coord: 4..134
e-value: 2.3E-69
score: 246.4
IPR007233Trafficking protein particle complex subunitPFAMPF04099Sybindincoord: 4..133
e-value: 1.6E-53
score: 180.5
IPR007233Trafficking protein particle complex subunitPANTHERPTHR23249TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNITcoord: 1..141
NoneNo IPR availableGENE3D3.30.450.70coord: 2..133
e-value: 8.6E-49
score: 167.5
NoneNo IPR availablePANTHERPTHR23249:SF17TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT-RELATEDcoord: 1..141
NoneNo IPR availableCDDcd14856TRAPPC4_synbindincoord: 5..130
e-value: 1.20819E-84
score: 241.653
IPR011012Longin-like domain superfamilySUPERFAMILY64356SNARE-likecoord: 1..133

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004163.jh1.t1MELO3C004163.jh1.t1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0030008 TRAPP complex