MELO3C004049 (gene) Melon (DHL92) v4

Overview


Name	MELO3C004049
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	DUF4283 domain-containing protein
Location	chr05: 23169523 .. 23169703 (-)
RNA-Seq Expression	MELO3C004049
Synteny	MELO3C004049

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGACCTGGGGCCTTTGTCCCTCTTTTCGGATGAGTTTCTCTCTAGTCCAGATCAGCTATCCATCTCTCAATCTCCAACATATCCAACACATTTAGACATTATCAAAGATAGCCTCGGGCAGATGTTAAACTCCAAAAATGAAGAAAAAATTGAAGAAGAAGCTGGAAAAGAAACTA

mRNA sequence

ATGGTGGACCTGGGGCCTTTGTCCCTCTTTTCGGATGAGTTTCTCTCTAGTCCAGATCAGCTATCCATCTCTCAATCTCCAACATATCCAACACATTTAGACATTATCAAAGATAGCCTCGGGCAGATGTTAAACTCCAAAAATGAAGAAAAAATTGAAGAAGAAGCTGGAAAAGAAACTA

Coding sequence (CDS)

ATGGTGGACCTGGGGCCTTTGTCCCTCTTTTCGGATGAGTTTCTCTCTAGTCCAGATCAGCTATCCATCTCTCAATCTCCAACATATCCAACACATTTAGACATTATCAAAGATAGCCTCGGGCAGATGTTAAACTCCAAAAATGAAGAAAAAATTGAAGAAGAAGCTGGAAAAGAAACT

Protein sequence

MVDLGPLSLFSDEFLSSPDQLSISQSPTYPTHLDIIKDSLGQMLNSKNEEKIEEEAGKET

Homology

[Close]

BLAST of MELO3C004049 vs. NCBI nr
Match: KAA0040039.1 (hypothetical protein E6C27_scaffold366G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 9.0e-15
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 2   VDLGPLSLFSDEFLSSPDQLSISQSPTYPTHLDIIKDSLGQMLNSKNEEKIEEEAGKE 60
           VDLGPLS FSDEFLSSPDQLSISQSPT PTH DIIKDS+ Q+L S+NEEK EEE G+E
Sbjct: 579 VDLGPLSPFSDEFLSSPDQLSISQSPTSPTHSDIIKDSIEQLLVSENEEKSEEEKGEE 636

[Close]

BLAST of MELO3C004049 vs. NCBI nr
Match: TYK06778.1 (hypothetical protein E5676_scaffold13G00800 [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 1.9e-12
Identity = 43/58 (74.14%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 2   VDLGPLSLFSDEFLSSPDQLSISQSPTYPTHLDIIKDSLGQMLNSKNEEKIEEEAGKE 60
           VDLGPLS FSDEFLSSPDQLSISQSPT PTH D+IKDS+ Q+L S+NEEK  +E  +E
Sbjct: 56  VDLGPLSPFSDEFLSSPDQLSISQSPTSPTHSDLIKDSIEQLLASENEEKSVKEKEEE 113

[Close]

BLAST of MELO3C004049 vs. NCBI nr
Match: KAA0032420.1 (hypothetical protein E6C27_scaffold2492G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-05
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 2   VDLGPLSLFSDEFLSSPDQLSISQSPTYPTHLDIIKDSLGQMLNSKNEEKIEEEA 57
           VDLG LS  SDEF+SS +Q  ++ S T PTH DI+KD +G M+ S +EEK  EEA
Sbjct: 49  VDLGSLSPMSDEFISSLEQFFLTPSMTSPTHSDIVKDGVGPMIISDHEEKDNEEA 103

[Close]

BLAST of MELO3C004049 vs. NCBI nr
Match: KAA0025170.1 (hypothetical protein E6C27_scaffold541G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-05
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 2   VDLGPLSLFSDEFLSSPDQLSISQSPTYPTHLDIIKDSLGQMLNSKNEEKIEEEA 57
           VDLG LS  SDEF+SS +Q  ++ S T PTH DI+KD +G M+ S +EEK  EEA
Sbjct: 49  VDLGSLSPMSDEFISSLEQFFLTPSMTSPTHSDIVKDGVGPMIISDHEEKDNEEA 103

[Close]

BLAST of MELO3C004049 vs. ExPASy TrEMBL
Match: A0A5A7TFK7 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00060 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.4e-15
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 2   VDLGPLSLFSDEFLSSPDQLSISQSPTYPTHLDIIKDSLGQMLNSKNEEKIEEEAGKE 60
           VDLGPLS FSDEFLSSPDQLSISQSPT PTH DIIKDS+ Q+L S+NEEK EEE G+E
Sbjct: 579 VDLGPLSPFSDEFLSSPDQLSISQSPTSPTHSDIIKDSIEQLLVSENEEKSEEEKGEE 636

[Close]

BLAST of MELO3C004049 vs. ExPASy TrEMBL
Match: A0A5D3C6J5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00800 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.1e-13
Identity = 43/58 (74.14%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 2   VDLGPLSLFSDEFLSSPDQLSISQSPTYPTHLDIIKDSLGQMLNSKNEEKIEEEAGKE 60
           VDLGPLS FSDEFLSSPDQLSISQSPT PTH D+IKDS+ Q+L S+NEEK  +E  +E
Sbjct: 56  VDLGPLSPFSDEFLSSPDQLSISQSPTSPTHSDLIKDSIEQLLASENEEKSVKEKEEE 113

[Close]

BLAST of MELO3C004049 vs. ExPASy TrEMBL
Match: A0A5A7SGB0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G00090 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 2   VDLGPLSLFSDEFLSSPDQLSISQSPTYPTHLDIIKDSLGQMLNSKNEEKIEEEA 57
           VDLG LS  SDEF+SS +Q  ++ S T PTH DI+KD +G M+ S +EEK  EEA
Sbjct: 49  VDLGSLSPMSDEFISSLEQFFLTPSMTSPTHSDIVKDGVGPMIISDHEEKDNEEA 103

[Close]

BLAST of MELO3C004049 vs. ExPASy TrEMBL
Match: A0A5A7SNQ2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2492G00010 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 2   VDLGPLSLFSDEFLSSPDQLSISQSPTYPTHLDIIKDSLGQMLNSKNEEKIEEEA 57
           VDLG LS  SDEF+SS +Q  ++ S T PTH DI+KD +G M+ S +EEK  EEA
Sbjct: 49  VDLGSLSPMSDEFISSLEQFFLTPSMTSPTHSDIVKDGVGPMIISDHEEKDNEEA 103

The following BLAST results are available for this feature:

BLAST of MELO3C004049 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040039.1	9.0e-15	81.03	hypothetical protein E6C27_scaffold366G00060 [Cucumis melo var. makuwa]	[more]
TYK06778.1	1.9e-12	74.14	hypothetical protein E5676_scaffold13G00800 [Cucumis melo var. makuwa]	[more]
KAA0032420.1	2.2e-05	56.36	hypothetical protein E6C27_scaffold2492G00010 [Cucumis melo var. makuwa]	[more]
KAA0025170.1	2.2e-05	56.36	hypothetical protein E6C27_scaffold541G00090 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C004049 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C004049 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TFK7	4.4e-15	81.03	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3C6J5	9.1e-13	74.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SGB0	1.1e-05	56.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SNQ2	1.1e-05	56.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C004049 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004049.1	MELO3C004049.1	mRNA