MELO3C003858 (gene) Melon (DHL92) v4

Overview
NameMELO3C003858
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionTaxadiene 5-alpha hydroxylase-like
Locationchr04: 5516000 .. 5516266 (+)
RNA-Seq ExpressionMELO3C003858
SyntenyMELO3C003858
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGAGATAGTTGGCGTCATCTACAAGCTCTTGGAATTCTAACGAAACCCCAAATGATGATGAATTCTGATGAGTGGGAGAGACGCGGCTACAGCAACACAACTAATCAAAATCACGGACGATACCAACAACTGAAGAATCGGACAATTGACTTGTTGGATGCAGTGGAGATGATGCGCGAAGACCTAGCAATGGTATGTGTTATCATCGAAGGTGTGTCGGCATGCAAGAGAGATAGTGGCGTAAAGGGAGGTCGACACTGA

mRNA sequence

ATGGTGAGAGATAGTTGGCGTCATCTACAAGCTCTTGGAATTCTAACGAAACCCCAAATGATGATGAATTCTGATGAGTGGGAGAGACGCGGCTACAGCAACACAACTAATCAAAATCACGGACGATACCAACAACTGAAGAATCGGACAATTGACTTGTTGGATGCAGTGGAGATGATGCGCGAAGACCTAGCAATGGTATGTGTTATCATCGAAGGTGTGTCGGCATGCAAGAGAGATAGTGGCGTAAAGGGAGGTCGACACTGA

Coding sequence (CDS)

ATGGTGAGAGATAGTTGGCGTCATCTACAAGCTCTTGGAATTCTAACGAAACCCCAAATGATGATGAATTCTGATGAGTGGGAGAGACGCGGCTACAGCAACACAACTAATCAAAATCACGGACGATACCAACAACTGAAGAATCGGACAATTGACTTGTTGGATGCAGTGGAGATGATGCGCGAAGACCTAGCAATGGTATGTGTTATCATCGAAGGTGTGTCGGCATGCAAGAGAGATAGTGGCGTAAAGGGAGGTCGACACTGA

Protein sequence

MVRDSWRHLQALGILTKPQMMMNSDEWERRGYSNTTNQNHGRYQQLKNRTIDLLDAVEMMREDLAMVCVIIEGVSACKRDSGVKGGRH
Homology
[Close]
BLAST of MELO3C003858 vs. NCBI nr
Match: TYJ97748.1 (taxadiene 5-alpha hydroxylase-like [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-10
Identity = 40/65 (61.54%), Postives = 50/65 (76.92%), Query Frame = 0 

Query: 21 MMNSDEWERRGYSNTTNQNHGRYQQLKNRTIDLLDAVEMMREDLAMVCVIIEGVSACKRD 80
          M NSD+W RRG S+TTN+N  R QQLKNRT+ L +A+EMM  DLAMVCV+I  + AC+R+
Sbjct: 1  MTNSDKWGRRGNSDTTNRNRRRDQQLKNRTV-LSNAMEMMHGDLAMVCVVIGVIPACERN 60

Query: 81 SGVKG 86
           GV G
Sbjct: 61 GGVSG 64

[Close]
BLAST of MELO3C003858 vs. NCBI nr
Match: KAA0046464.1 (taxadiene 5-alpha hydroxylase-like [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 5.8e-10
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 0 

Query: 21 MMNSDEWERRGYSNTTNQNHGRYQQLKNRTIDLLDAVEMMREDLAMVCVIIEGVSACKRD 80
          M NSD+W RRG S+TTN+N  R QQLKNRT+ L +A+EMM  DLAMVCV+I  + AC+R+
Sbjct: 1  MTNSDKWGRRGNSDTTNRNRRRDQQLKNRTV-LSNAMEMMHGDLAMVCVVIGVIPACERN 60

Query: 81 SGV 84
           GV
Sbjct: 61 GGV 62

[Close]
BLAST of MELO3C003858 vs. ExPASy TrEMBL
Match: A0A5D3BHT7 (Taxadiene 5-alpha hydroxylase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00510 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.6e-11
Identity = 40/65 (61.54%), Postives = 50/65 (76.92%), Query Frame = 0 

Query: 21 MMNSDEWERRGYSNTTNQNHGRYQQLKNRTIDLLDAVEMMREDLAMVCVIIEGVSACKRD 80
          M NSD+W RRG S+TTN+N  R QQLKNRT+ L +A+EMM  DLAMVCV+I  + AC+R+
Sbjct: 1  MTNSDKWGRRGNSDTTNRNRRRDQQLKNRTV-LSNAMEMMHGDLAMVCVVIGVIPACERN 60

Query: 81 SGVKG 86
           GV G
Sbjct: 61 GGVSG 64

[Close]
BLAST of MELO3C003858 vs. ExPASy TrEMBL
Match: A0A5A7TTS5 (Taxadiene 5-alpha hydroxylase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold543G00420 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.8e-10
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 0 

Query: 21 MMNSDEWERRGYSNTTNQNHGRYQQLKNRTIDLLDAVEMMREDLAMVCVIIEGVSACKRD 80
          M NSD+W RRG S+TTN+N  R QQLKNRT+ L +A+EMM  DLAMVCV+I  + AC+R+
Sbjct: 1  MTNSDKWGRRGNSDTTNRNRRRDQQLKNRTV-LSNAMEMMHGDLAMVCVVIGVIPACERN 60

Query: 81 SGV 84
           GV
Sbjct: 61 GGV 62

The following BLAST results are available for this feature:
BLAST of MELO3C003858 vs. NCBI nr
Match NameE-valueIdentityDescription
TYJ97748.11.2e-1061.54taxadiene 5-alpha hydroxylase-like [Cucumis melo var. makuwa][more]
KAA0046464.15.8e-1061.90taxadiene 5-alpha hydroxylase-like [Cucumis melo var. makuwa][more]
BLAST of MELO3C003858 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C003858 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BHT75.6e-1161.54Taxadiene 5-alpha hydroxylase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A5A7TTS52.8e-1061.90Taxadiene 5-alpha hydroxylase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C... [more]
BLAST of MELO3C003858 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C003858.1MELO3C003858.1mRNA