MELO3C003643.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C003643.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Ribosomal RNA large subunit methyltransferase H
Location	chr04: 2792757 .. 2795315 (+)
RNA-Seq Expression	MELO3C003643.jh1
Synteny	MELO3C003643.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTCTTATCTAATAAATGATTACCGCTCTCTCCACTGCCCTTTCTGCTTCTCCTTCAGGTGTTTCTTCTTCTACAATTCGACTTAGGTTTTGTTCTTCCATATTCTAACCGCCCATTTCTAACGTTTCTTCGATTTCGAGTTTTCAGGTGGACGCTGCAAATACACAGGTCAATCTGTGGTACTACATTTCTCGTTTCTCCGCTGTTTTGTTTTTGTGATTCTCCATTCGTTTTTTGCAATTCCTGTTTGTTAATTAATCTTATATTGGAGTTTGATTGGGGATTCGAATGGCTGGATTTTAATCTGAAAGTGGTTTTACGGACAATGACAGAGAGCGGTGCCAATACGTGTTTTAACTGTGGGGAAGAAGAGGTCTCGTGGCGTACAGCTTCTTGTTGATGAGTATATTGATAAGCTCAAGAACTACTGTCATGTTGAAGATGTTCAACTGCGCTCAAATCCGAGGAATGCGCGGTATGGGATTTTAGGGTTGATGTTAGTTTGTAAATTTTGTTTTGCTGAATGATGTTAAGCTTAATTGAATACTTCCATTCTGCATATTGGTACTTGAATTTAGGGATCCGAAAGCTCAGATTGATGATGAAGACGTGGCTGTCGTGAATCTTCTCAAGTCTGACGACTGGGTTTATCTCTTAACATTCTTTTTCGTCGGATCATTACATATTTTGTTTTTCTGGCTGCGCTCGTTTACCAAAAACTAGTTTACAACTCTCTCTTTCCGAATTAATTACATATTTCTTTTGTCGACTAAAAACGTAAAAGAAGATTGTACTCTTGAACTCTTTTACTAAAGAAAAAATGAGTCTTAGTGCTTTTTTCTGGGAAAGAAATATAGGTTGCAATATATTTTTTTATATACAATACGACCGATGTGGGTTGAGGGATTTGGATGTCCGATCTCAATAGGAGTACGATATGCTTGTGTGTCAGATCAAAACGATCTGTAGAATGCTTTTTAGTGCTGCTATTACTGCTTACTATCTCCATTATGCATATGCACCTTGCAGGTTGTAATGCTAGATGAGAATGGGAAAGAGATATCCTCCGAGCAGATGGCTGAGTTGGTGGCAGATGCAGGCAATACAGTGCGTAGCATTTTCAATTCAAATCGAATTAGTTGCTTCATTATTATCTGTTAATCTCTACTTTTGACAATAGTCATGATACTTCAAATTTTAAAAGTTAGTGTCAAGGAGTTCGGTCTGGAAATTGAAAGTTTTGATTATTCTCAAATTAACAAGCCCACATGTTCCAATTTCCATATTAGTCTAGATCTTAGCATGTGACAGTCTCTCTCTTTCTAATTCTATATGATGACAGATGGCTAGAAGTAGAACAATATGTGGATTATTTTAAATTTTCAGTTGTCACCCTGCTCCAGTTGTTTCTGAAACAACTTTAATAGAGCTATCGGGGTATGTCAGAGAATGGGCATGGCATTTTTTAGACGTTCTTAGATCAGATACTGTCTTCTAATCTTATGTTTCTTATTCTCTGCAGGGTGCTTCAAGATTATCATTTTGCATTGGTGGACCGTATGGCCATGGACAAAAACTGCGAGAACGAGCTAACTTATCAATCAAGCTTTCCTCCATGGTATTAAATCATCAAATTGCACTACTTGTGCTTATGGAACAACTTTACAGGTAACATTTCTTTTTTCCTTCTAGTCAATAGTGCCTCTTGGGTGGAACTGATGTGTTGAAGATAATGAACTTAAGATGCTGGACGTACAATTGTATTATCCCTTGAAACTTCCTGTTTTTGTTCACTACGGCCAAAATCTCTCTCGGTCTTGCCTGGCACCTAGAATCTACTCAAACCTCATAGCTTATGGCTGCAAAATGTTTTGAAATTTCATATCCGGACATTAAATTTATAACTTAAGCAGCCATTTTGAAACTTTTGAAATCAAACCGCCACTTTCTTTCACACATTTACTTCAAAATCCAACAGTAAACACCCTACTCACTCTGCACCATCTTGCATTTTGAAGTGAACATACTTGTTCTCAATGCATTTGTATTAATTTTAGGTCATGGACTATTCTAAAAGGTCAGAAGTACCATCATTAGCAGCAGCAGTTCAAATGCCAGCTTAGCGGTATTTTGCCTTGATATGTTACATCTTTAGCTGTCTATTTCATCTTTCACAATAGAAGGAAAAGTTTAAGTTTGTGTAAAAATTATCTCTTATTGCCATTATTGTAGGAAAGTTTGTTGTCCAAAGCATTTCCCTCCCAATCTTTCGTGTACGAATATAAATTCAACTACTCGTAAGTGTAAGTTCTAATGGGTCAAGAATTTTAACCTCATCTTAAAGAAATTAATAGATGTCTCAACCATTGTTGTGTACCATATTTGCTCTTGGATTCATGACGAATGGAGCCTCGAGGTGGAGATTAACTATTTTCGGCATCATTACGCTTGATTTCTTCTCTTTTCTTATGGGGGGAGATAGGAGACTCGTTTAGGGTAGTTTACCATGATGTTGTAATGAACATTGCGAGAATCCATGATATTTGTGTATTTGGCAATGTATATTTAATTTGTTTTTGTTGGCT

mRNA sequence

AATTCTTATCTAATAAATGATTACCGCTCTCTCCACTGCCCTTTCTGCTTCTCCTTCAGGTGGACGCTGCAAATACACAGGTCAATCTGTGAGAGCGGTGCCAATACGTGTTTTAACTGTGGGGAAGAAGAGGTCTCGTGGCGTACAGCTTCTTGTTGATGAGTATATTGATAAGCTCAAGAACTACTGTCATGTTGAAGATGTTCAACTGCGCTCAAATCCGAGGAATGCGCGGGATCCGAAAGCTCAGATTGATGATGAAGACGTGGCTGTCGTGAATCTTCTCAAGTCTGACGACTGGGTTGTAATGCTAGATGAGAATGGGAAAGAGATATCCTCCGAGCAGATGGCTGAGTTGGTGGCAGATGCAGGCAATACAGGTGCTTCAAGATTATCATTTTGCATTGGTGGACCGTATGGCCATGGACAAAAACTGCGAGAACGAGCTAACTTATCAATCAAGCTTTCCTCCATGGTATTAAATCATCAAATTGCACTACTTGTGCTTATGGAACAACTTTACAGGTCATGGACTATTCTAAAAGGTCAGAAGTACCATCATTAGCAGCAGCAGTTCAAATGCCAGCTTAGCGGAAAGTTTGTTGTCCAAAGCATTTCCCTCCCAATCTTTCGTGTACGAATATAAATTCAACTACTCGTAAGTGTAAGTTCTAATGGGTCAAGAATTTTAACCTCATCTTAAAGAAATTAATAGATGTCTCAACCATTGTTGTGTACCATATTTGCTCTTGGATTCATGACGAATGGAGCCTCGAGGTGGAGATTAACTATTTTCGGCATCATTACGCTTGATTTCTTCTCTTTTCTTATGGGGGGAGATAGGAGACTCGTTTAGGGTAGTTTACCATGATGTTGTAATGAACATTGCGAGAATCCATGATATTTGTGTATTTGGCAATGTATATTTAATTTGTTTTTGTTGGCT

Coding sequence (CDS)

ATGATTACCGCTCTCTCCACTGCCCTTTCTGCTTCTCCTTCAGGTGGACGCTGCAAATACACAGGTCAATCTGTGAGAGCGGTGCCAATACGTGTTTTAACTGTGGGGAAGAAGAGGTCTCGTGGCGTACAGCTTCTTGTTGATGAGTATATTGATAAGCTCAAGAACTACTGTCATGTTGAAGATGTTCAACTGCGCTCAAATCCGAGGAATGCGCGGGATCCGAAAGCTCAGATTGATGATGAAGACGTGGCTGTCGTGAATCTTCTCAAGTCTGACGACTGGGTTGTAATGCTAGATGAGAATGGGAAAGAGATATCCTCCGAGCAGATGGCTGAGTTGGTGGCAGATGCAGGCAATACAGGTGCTTCAAGATTATCATTTTGCATTGGTGGACCGTATGGCCATGGACAAAAACTGCGAGAACGAGCTAACTTATCAATCAAGCTTTCCTCCATGGTATTAAATCATCAAATTGCACTACTTGTGCTTATGGAACAACTTTACAGGTCATGGACTATTCTAAAAGGTCAGAAGTACCATCATTAG

Protein sequence

MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQIDDEDVAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGNTGASRLSFCIGGPYGHGQKLRERANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKYHH

Homology

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BLAST of MELO3C003643.jh1 vs. NCBI nr
Match: XP_008466330.1 (PREDICTED: putative RNA methyltransferase At5g10620 [Cucumis melo] >XP_008466331.1 PREDICTED: putative RNA methyltransferase At5g10620 [Cucumis melo])

HSP 1 Score: 353 bits (906), Expect = 1.31e-122
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60
           MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV
Sbjct: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60

Query: 61  EDVQLRSNPRNARDPKAQIDDEDVAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120
           EDVQLRSNPRNARDPKAQIDDEDVAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN
Sbjct: 61  EDVQLRSNPRNARDPKAQIDDEDVAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120

Query: 121 TGASRLSFCIGGPYGHGQKLRERANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180
           TGASRLSFCIGGPYGHGQKLRERANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY
Sbjct: 121 TGASRLSFCIGGPYGHGQKLRERANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180

Query: 181 HH 182
           HH
Sbjct: 181 HH 182

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BLAST of MELO3C003643.jh1 vs. NCBI nr
Match: XP_011652513.1 (putative RNA methyltransferase At5g10620 isoform X4 [Cucumis sativus])

HSP 1 Score: 342 bits (878), Expect = 2.44e-118
Identity = 175/182 (96.15%), Postives = 179/182 (98.35%), Query Frame = 0


Query: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60
           MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV
Sbjct: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60

Query: 61  EDVQLRSNPRNARDPKAQIDDEDVAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120
           EDVQLRSNPRNARDPKAQ+DDEDVAVVNLLK DDWVVMLDENGKE+SSE MAELVADAGN
Sbjct: 61  EDVQLRSNPRNARDPKAQVDDEDVAVVNLLKPDDWVVMLDENGKELSSELMAELVADAGN 120

Query: 121 TGASRLSFCIGGPYGHGQKLRERANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180
           T ASRLSFCIGGPYGHGQ+LR+RANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY
Sbjct: 121 TSASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180

Query: 181 HH 182
           HH
Sbjct: 181 HH 182

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BLAST of MELO3C003643.jh1 vs. NCBI nr
Match: XP_022940478.1 (putative RNA methyltransferase At5g10620 [Cucurbita moschata] >KAG6608193.1 putative RNA methyltransferase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 331 bits (849), Expect = 6.44e-114
Identity = 166/182 (91.21%), Postives = 177/182 (97.25%), Query Frame = 0


Query: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60
           M+TAL   +SASPS GRCKYTGQSVRAVPIRVLTVGKKRSRGVQLL+DEYIDKL NYC+V
Sbjct: 1   MVTALCATISASPSVGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLIDEYIDKLNNYCNV 60

Query: 61  EDVQLRSNPRNARDPKAQIDDEDVAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120
           EDVQLRSNPRNARDP+AQ+DDED+AVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN
Sbjct: 61  EDVQLRSNPRNARDPRAQVDDEDIAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120

Query: 121 TGASRLSFCIGGPYGHGQKLRERANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180
           TGASRL+FCIGGPYGHGQ+LR+RAN+SIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY
Sbjct: 121 TGASRLAFCIGGPYGHGQQLRQRANVSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180

Query: 181 HH 182
           HH
Sbjct: 181 HH 182

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BLAST of MELO3C003643.jh1 vs. NCBI nr
Match: XP_004136319.1 (putative RNA methyltransferase At5g10620 isoform X2 [Cucumis sativus] >KAE8651373.1 hypothetical protein Csa_002160 [Cucumis sativus])

HSP 1 Score: 330 bits (847), Expect = 2.62e-113
Identity = 175/202 (86.63%), Postives = 179/202 (88.61%), Query Frame = 0


Query: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60
           MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV
Sbjct: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60

Query: 61  EDVQLRSNPRNARDPKAQIDDEDVAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120
           EDVQLRSNPRNARDPKAQ+DDEDVAVVNLLK DDWVVMLDENGKE+SSE MAELVADAGN
Sbjct: 61  EDVQLRSNPRNARDPKAQVDDEDVAVVNLLKPDDWVVMLDENGKELSSELMAELVADAGN 120

Query: 121 T--------------------GASRLSFCIGGPYGHGQKLRERANLSIKLSSMVLNHQIA 180
           T                     ASRLSFCIGGPYGHGQ+LR+RANLSIKLSSMVLNHQIA
Sbjct: 121 TVSSCHHAPIVSGNNFNRAIGSASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIA 180

Query: 181 LLVLMEQLYRSWTILKGQKYHH 182
           LLVLMEQLYRSWTILKGQKYHH
Sbjct: 181 LLVLMEQLYRSWTILKGQKYHH 202

[Close]

BLAST of MELO3C003643.jh1 vs. NCBI nr
Match: XP_022982492.1 (putative RNA methyltransferase At5g10620 [Cucurbita maxima] >XP_022982493.1 putative RNA methyltransferase At5g10620 [Cucurbita maxima])

HSP 1 Score: 327 bits (837), Expect = 4.35e-112
Identity = 164/182 (90.11%), Postives = 175/182 (96.15%), Query Frame = 0


Query: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60
           M+TAL   +SASPS GRCKYTGQSVRAVPIRVLTVGKKRSRGVQLL+DEYIDKL NYC+V
Sbjct: 1   MVTALCATISASPSVGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLIDEYIDKLNNYCNV 60

Query: 61  EDVQLRSNPRNARDPKAQIDDEDVAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120
           EDVQLRSNPRN RD +AQ+DDED+AVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN
Sbjct: 61  EDVQLRSNPRNTRDARAQVDDEDIAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120

Query: 121 TGASRLSFCIGGPYGHGQKLRERANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180
           TGASRLSFCIGGPYGHGQ+LR+RAN+SIKLSSMVLNHQIA+LVLMEQLYRSWTILKGQKY
Sbjct: 121 TGASRLSFCIGGPYGHGQQLRQRANVSIKLSSMVLNHQIAVLVLMEQLYRSWTILKGQKY 180

Query: 181 HH 182
           HH
Sbjct: 181 HH 182

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BLAST of MELO3C003643.jh1 vs. ExPASy Swiss-Prot
Match: Q9LXB4 (Putative RNA methyltransferase At5g10620 OS=Arabidopsis thaliana OX=3702 GN=At5g10620 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.5e-66
Identity = 125/177 (70.62%), Postives = 153/177 (86.44%), Query Frame = 0


Query: 10  SASPS----GGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQL 69
           SASP+    G  C+Y GQ+VRA+PIRV+TVGKKRS GV+LLVDEY  KLK YC  ED  +
Sbjct: 17  SASPTPQEKGRTCRYAGQAVRALPIRVITVGKKRSEGVRLLVDEYKIKLKPYCSFEDSLV 76

Query: 70  RSNPRNARDPKAQIDDEDVAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGNTGASR 129
           RSNPRNA+D +AQ++DE+VA++ L+ SDDWVV+LDE G++I SEQMAEL+ DAGN+GASR
Sbjct: 77  RSNPRNAQDVRAQVEDEEVAMMKLIGSDDWVVVLDERGRDIDSEQMAELLGDAGNSGASR 136

Query: 130 LSFCIGGPYGHGQKLRERANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKYHH 183
           +SFCIGG YGHG ++R+RAN++I+LSSMVLNHQIAL+VLMEQLYRSWTILKGQ YHH
Sbjct: 137 ISFCIGGAYGHGTQVRKRANVTIRLSSMVLNHQIALVVLMEQLYRSWTILKGQNYHH 193

[Close]

BLAST of MELO3C003643.jh1 vs. ExPASy Swiss-Prot
Match: A0M0D0 (Ribosomal RNA large subunit methyltransferase H OS=Gramella forsetii (strain KT0803) OX=411154 GN=rlmH PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 7.5e-23
Identity = 60/158 (37.97%), Postives = 94/158 (59.49%), Query Frame = 0


Query: 30  IRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVE-----DVQLRSNPRNARDPKAQIDDEDV 89
           I+++ +GK   + ++ L+  Y D+L++Y   E     D++   N     D   Q   E  
Sbjct: 3   IKLVCIGKTDKKELEALIKIYSDRLQHYIKFEFEIIPDLKKTKN----LDENQQKSKEGE 62

Query: 90  AVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGNTGASRLSFCIGGPYGHGQKLRERA 149
            +++ +++ D+VV+LDENGK+ SSE  +E +    NTG  RL F IGGPYG  +++ +RA
Sbjct: 63  LILSGVQNSDFVVLLDENGKQFSSESFSEYIQKRMNTGLKRLIFVIGGPYGFSEEVYKRA 122

Query: 150 NLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKYHH 183
           +  I LS M  +HQ+  L   EQLYR++TILK + YHH
Sbjct: 123 DSKISLSKMTFSHQMVRLFFTEQLYRAFTILKNEPYHH 156

[Close]

BLAST of MELO3C003643.jh1 vs. ExPASy Swiss-Prot
Match: Q1DCX5 (Ribosomal RNA large subunit methyltransferase H OS=Myxococcus xanthus (strain DK1622) OX=246197 GN=rlmH PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.4e-21
Identity = 60/152 (39.47%), Postives = 89/152 (58.55%), Query Frame = 0


Query: 30  IRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQIDDEDVAVVNL 89
           +R+L++GK RS   +  V EY  +L +Y   E V++         P      E  A+++ 
Sbjct: 3   VRLLSIGKDRSGLYEPAVQEYAKRLGHYTRFELVEMAEASGKRLKPGDAKAAEAEAILSK 62

Query: 90  LKSDDWVVMLDENGKEISSEQMAELVADAGNTGASRLSFCIGGPYGHGQKLRERANLSIK 149
            K  DW+V LDE G  + S +++  V  A  TGA  L F IGG  G   ++R+ ANL++ 
Sbjct: 63  RKPQDWLVALDERGSLLDSVELSRYVGKA-QTGAKDLLFIIGGDEGLDARVRDAANLTLS 122

Query: 150 LSSMVLNHQIALLVLMEQLYRSWTILKGQKYH 182
           LS M L H++A +VL+EQLYR++TILKG+ YH
Sbjct: 123 LSKMTLPHRLARVVLIEQLYRAFTILKGEPYH 153

[Close]

BLAST of MELO3C003643.jh1 vs. ExPASy Swiss-Prot
Match: A0PXE8 (Ribosomal RNA large subunit methyltransferase H OS=Clostridium novyi (strain NT) OX=386415 GN=rlmH PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.5e-20
Identity = 55/156 (35.26%), Postives = 89/156 (57.05%), Query Frame = 0


Query: 30  IRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQL--RSNPRNARDPKAQI--DDEDVA 89
           I ++ VGK + + ++L +DEY  +L  YC +  V+L     P NA +    I    E   
Sbjct: 3   ITIICVGKLKEKYLKLAIDEYSKRLSRYCKLNIVELNDEKTPDNASEKDELIIKQKEGSK 62

Query: 90  VVNLLKSDDWVVMLDENGKEISSEQMAELVADAGNTGASRLSFCIGGPYGHGQKLRERAN 149
           ++  +K + +V+ LD NGK  SSE++AEL+ D G  G S ++  IGG  G  +++  RAN
Sbjct: 63  ILAHVKENMYVIALDLNGKMASSEELAELIGDLGLKGKSNIALVIGGSLGLSKEVLNRAN 122

Query: 150 LSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKYH 182
             +  S M   HQ+  ++L+EQ+YR++ I  G+ YH
Sbjct: 123 YKLSFSKMTFPHQLMRVILLEQIYRAYKINAGEPYH 158

[Close]

BLAST of MELO3C003643.jh1 vs. ExPASy Swiss-Prot
Match: A5FE53 (Ribosomal RNA large subunit methyltransferase H OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / NBRC 14942 / NCIMB 11054 / UW101) OX=376686 GN=rlmH PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.0e-19
Identity = 52/155 (33.55%), Postives = 91/155 (58.71%), Query Frame = 0


Query: 30  IRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARD--PKAQIDDEDVAVV 89
           I+++ +GK  ++ +Q L+D+Y  +L  Y    D+++  + +N ++     Q + E   ++
Sbjct: 3   IKLIAIGKTDNKSLQTLIDDYTKRLSFYIKF-DLEIIPDIKNVKNLSESQQKEKEGELIL 62

Query: 90  NLLKSDDWVVMLDENGKEISSEQMAELVADAGNTGASRLSFCIGGPYGHGQKLRERANLS 149
           + L + D +++LDENGK  SS   +E +    N+G   L F IGGPYG  + + ++A   
Sbjct: 63  SKLSATDQLILLDENGKTFSSVGFSEELQKKMNSGVKTLVFVIGGPYGFSETIYKKAQGK 122

Query: 150 IKLSSMVLNHQIALLVLMEQLYRSWTILKGQKYHH 183
           + LS M  +HQ+  L  +EQLYR +TIL+ + YHH
Sbjct: 123 VSLSLMTFSHQMVRLFFIEQLYRGFTILRNEPYHH 156

[Close]

BLAST of MELO3C003643.jh1 vs. ExPASy TrEMBL
Match: A0A1S3CQZ8 (putative RNA methyltransferase At5g10620 OS=Cucumis melo OX=3656 GN=LOC103503770 PE=3 SV=1)

HSP 1 Score: 353 bits (906), Expect = 6.36e-123
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60
           MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV
Sbjct: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60

Query: 61  EDVQLRSNPRNARDPKAQIDDEDVAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120
           EDVQLRSNPRNARDPKAQIDDEDVAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN
Sbjct: 61  EDVQLRSNPRNARDPKAQIDDEDVAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120

Query: 121 TGASRLSFCIGGPYGHGQKLRERANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180
           TGASRLSFCIGGPYGHGQKLRERANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY
Sbjct: 121 TGASRLSFCIGGPYGHGQKLRERANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180

Query: 181 HH 182
           HH
Sbjct: 181 HH 182

[Close]

BLAST of MELO3C003643.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LGS0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881670 PE=3 SV=1)

HSP 1 Score: 342 bits (878), Expect = 1.18e-118
Identity = 175/182 (96.15%), Postives = 179/182 (98.35%), Query Frame = 0


Query: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60
           MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV
Sbjct: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60

Query: 61  EDVQLRSNPRNARDPKAQIDDEDVAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120
           EDVQLRSNPRNARDPKAQ+DDEDVAVVNLLK DDWVVMLDENGKE+SSE MAELVADAGN
Sbjct: 61  EDVQLRSNPRNARDPKAQVDDEDVAVVNLLKPDDWVVMLDENGKELSSELMAELVADAGN 120

Query: 121 TGASRLSFCIGGPYGHGQKLRERANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180
           T ASRLSFCIGGPYGHGQ+LR+RANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY
Sbjct: 121 TSASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180

Query: 181 HH 182
           HH
Sbjct: 181 HH 182

[Close]

BLAST of MELO3C003643.jh1 vs. ExPASy TrEMBL
Match: A0A6J1FPF2 (putative RNA methyltransferase At5g10620 OS=Cucurbita moschata OX=3662 GN=LOC111446064 PE=3 SV=1)

HSP 1 Score: 331 bits (849), Expect = 3.12e-114
Identity = 166/182 (91.21%), Postives = 177/182 (97.25%), Query Frame = 0


Query: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60
           M+TAL   +SASPS GRCKYTGQSVRAVPIRVLTVGKKRSRGVQLL+DEYIDKL NYC+V
Sbjct: 1   MVTALCATISASPSVGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLIDEYIDKLNNYCNV 60

Query: 61  EDVQLRSNPRNARDPKAQIDDEDVAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120
           EDVQLRSNPRNARDP+AQ+DDED+AVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN
Sbjct: 61  EDVQLRSNPRNARDPRAQVDDEDIAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120

Query: 121 TGASRLSFCIGGPYGHGQKLRERANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180
           TGASRL+FCIGGPYGHGQ+LR+RAN+SIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY
Sbjct: 121 TGASRLAFCIGGPYGHGQQLRQRANVSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180

Query: 181 HH 182
           HH
Sbjct: 181 HH 182

[Close]

BLAST of MELO3C003643.jh1 vs. ExPASy TrEMBL
Match: A0A6J1IWR3 (putative RNA methyltransferase At5g10620 OS=Cucurbita maxima OX=3661 GN=LOC111481296 PE=3 SV=1)

HSP 1 Score: 327 bits (837), Expect = 2.11e-112
Identity = 164/182 (90.11%), Postives = 175/182 (96.15%), Query Frame = 0


Query: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60
           M+TAL   +SASPS GRCKYTGQSVRAVPIRVLTVGKKRSRGVQLL+DEYIDKL NYC+V
Sbjct: 1   MVTALCATISASPSVGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLIDEYIDKLNNYCNV 60

Query: 61  EDVQLRSNPRNARDPKAQIDDEDVAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120
           EDVQLRSNPRN RD +AQ+DDED+AVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN
Sbjct: 61  EDVQLRSNPRNTRDARAQVDDEDIAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120

Query: 121 TGASRLSFCIGGPYGHGQKLRERANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180
           TGASRLSFCIGGPYGHGQ+LR+RAN+SIKLSSMVLNHQIA+LVLMEQLYRSWTILKGQKY
Sbjct: 121 TGASRLSFCIGGPYGHGQQLRQRANVSIKLSSMVLNHQIAVLVLMEQLYRSWTILKGQKY 180

Query: 181 HH 182
           HH
Sbjct: 181 HH 182

[Close]

BLAST of MELO3C003643.jh1 vs. ExPASy TrEMBL
Match: A0A6J1BPR4 (putative RNA methyltransferase At5g10620 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111026123 PE=3 SV=1)

HSP 1 Score: 322 bits (824), Expect = 2.32e-110
Identity = 164/186 (88.17%), Postives = 179/186 (96.24%), Query Frame = 0


Query: 1   MITALSTALSAS----PSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKN 60
           M++AL  +LSAS    PSGGRCKYT QSVRAVPIRVLTVGKKRSRGVQL+VDEYI+KLK+
Sbjct: 1   MVSALCASLSASASPSPSGGRCKYTAQSVRAVPIRVLTVGKKRSRGVQLVVDEYIEKLKH 60

Query: 61  YCHVEDVQLRSNPRNARDPKAQIDDEDVAVVNLLKSDDWVVMLDENGKEISSEQMAELVA 120
           YC+VEDVQLRSNPRNARDP+AQ+DDED+AVVNLLKSDDWVVMLDENGKE+SSE+MAELVA
Sbjct: 61  YCNVEDVQLRSNPRNARDPRAQVDDEDMAVVNLLKSDDWVVMLDENGKEMSSERMAELVA 120

Query: 121 DAGNTGASRLSFCIGGPYGHGQKLRERANLSIKLSSMVLNHQIALLVLMEQLYRSWTILK 180
           DAGNTGASRLSFCIGGPYGHGQ+LR+RANL+IKLSSMVLNHQIALLVLMEQLYRSWTILK
Sbjct: 121 DAGNTGASRLSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYRSWTILK 180

Query: 181 GQKYHH 182
           GQKYHH
Sbjct: 181 GQKYHH 186

[Close]

BLAST of MELO3C003643.jh1 vs. TAIR 10
Match: AT5G10620.1 (methyltransferases )

HSP 1 Score: 253.1 bits (645), Expect = 1.7e-67
Identity = 125/177 (70.62%), Postives = 153/177 (86.44%), Query Frame = 0


Query: 10  SASPS----GGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQL 69
           SASP+    G  C+Y GQ+VRA+PIRV+TVGKKRS GV+LLVDEY  KLK YC  ED  +
Sbjct: 17  SASPTPQEKGRTCRYAGQAVRALPIRVITVGKKRSEGVRLLVDEYKIKLKPYCSFEDSLV 76

Query: 70  RSNPRNARDPKAQIDDEDVAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGNTGASR 129
           RSNPRNA+D +AQ++DE+VA++ L+ SDDWVV+LDE G++I SEQMAEL+ DAGN+GASR
Sbjct: 77  RSNPRNAQDVRAQVEDEEVAMMKLIGSDDWVVVLDERGRDIDSEQMAELLGDAGNSGASR 136

Query: 130 LSFCIGGPYGHGQKLRERANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKYHH 183
           +SFCIGG YGHG ++R+RAN++I+LSSMVLNHQIAL+VLMEQLYRSWTILKGQ YHH
Sbjct: 137 ISFCIGGAYGHGTQVRKRANVTIRLSSMVLNHQIALVVLMEQLYRSWTILKGQNYHH 193

[Close]

BLAST of MELO3C003643.jh1 vs. TAIR 10
Match: AT5G10605.1 (methyltransferases )

HSP 1 Score: 55.1 bits (131), Expect = 7.0e-08
Identity = 26/36 (72.22%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 131 GGPYGHGQKLRERANLSIKLSSMVLNHQIALLVLME 167
           G  YGHG++LR+RAN++I+LSSMVLNH IAL+VLME
Sbjct: 21  GVAYGHGRQLRKRANVAIRLSSMVLNHHIALVVLME 56

[Close]

BLAST of MELO3C003643.jh1 vs. TAIR 10
Match: AT5G10605.2 (methyltransferases )

HSP 1 Score: 55.1 bits (131), Expect = 7.0e-08
Identity = 26/36 (72.22%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 131 GGPYGHGQKLRERANLSIKLSSMVLNHQIALLVLME 167
           G  YGHG++LR+RAN++I+LSSMVLNH IAL+VLME
Sbjct: 21  GVAYGHGRQLRKRANVAIRLSSMVLNHHIALVVLME 56

The following BLAST results are available for this feature:

BLAST of MELO3C003643.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466330.1	1.31e-122	100.00	PREDICTED: putative RNA methyltransferase At5g10620 [Cucumis melo] >XP_008466331...	[more]
XP_011652513.1	2.44e-118	96.15	putative RNA methyltransferase At5g10620 isoform X4 [Cucumis sativus]	[more]
XP_022940478.1	6.44e-114	91.21	putative RNA methyltransferase At5g10620 [Cucurbita moschata] >KAG6608193.1 puta...	[more]
XP_004136319.1	2.62e-113	86.63	putative RNA methyltransferase At5g10620 isoform X2 [Cucumis sativus] >KAE865137...	[more]
XP_022982492.1	4.35e-112	90.11	putative RNA methyltransferase At5g10620 [Cucurbita maxima] >XP_022982493.1 puta...	[more]

BLAST of MELO3C003643.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LXB4	2.5e-66	70.62	Putative RNA methyltransferase At5g10620 OS=Arabidopsis thaliana OX=3702 GN=At5g...	[more]
A0M0D0	7.5e-23	37.97	Ribosomal RNA large subunit methyltransferase H OS=Gramella forsetii (strain KT0...	[more]
Q1DCX5	5.4e-21	39.47	Ribosomal RNA large subunit methyltransferase H OS=Myxococcus xanthus (strain DK...	[more]
A0PXE8	4.5e-20	35.26	Ribosomal RNA large subunit methyltransferase H OS=Clostridium novyi (strain NT)...	[more]
A5FE53	1.0e-19	33.55	Ribosomal RNA large subunit methyltransferase H OS=Flavobacterium johnsoniae (st...	[more]

BLAST of MELO3C003643.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CQZ8	6.36e-123	100.00	putative RNA methyltransferase At5g10620 OS=Cucumis melo OX=3656 GN=LOC103503770...	[more]
A0A0A0LGS0	1.18e-118	96.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881670 PE=3 SV=1	[more]
A0A6J1FPF2	3.12e-114	91.21	putative RNA methyltransferase At5g10620 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1IWR3	2.11e-112	90.11	putative RNA methyltransferase At5g10620 OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1BPR4	2.32e-110	88.17	putative RNA methyltransferase At5g10620 isoform X2 OS=Momordica charantia OX=36...	[more]

BLAST of MELO3C003643.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10620.1	1.7e-67	70.62	methyltransferases	[more]
AT5G10605.1	7.0e-08	72.22	methyltransferases	[more]
AT5G10605.2	7.0e-08	72.22	methyltransferases	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003742	RNA methyltransferase RlmH	PIRSF	PIRSF004505	MT_bac	coord: 28..182 e-value: 2.3E-53 score: 178.5
IPR003742	RNA methyltransferase RlmH	PFAM	PF02590	SPOUT_MTase	coord: 30..181 e-value: 7.2E-46 score: 156.0
IPR003742	RNA methyltransferase RlmH	PANTHER	PTHR33603	METHYLTRANSFERASE	coord: 7..182
IPR003742	RNA methyltransferase RlmH	HAMAP	MF_00658	23SrRNA_methyltr_H	coord: 28..182 score: 23.279942
IPR003742	RNA methyltransferase RlmH	CDD	cd18081	RlmH-like	coord: 30..182 e-value: 3.22838E-62 score: 187.649
IPR029026	tRNA (guanine-N1-)-methyltransferase, N-terminal	GENE3D	3.40.1280.10		coord: 27..182 e-value: 7.8E-49 score: 167.2
None	No IPR available	SFLD	SFLDS00070	SPOUT_Methyltransferase	coord: 10..182 e-value: 0.0 score: 251.4
IPR029028	Alpha/beta knot methyltransferases	SUPERFAMILY	75217	alpha/beta knot	coord: 30..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003643.jh1.t2	MELO3C003643.jh1.t2	mRNA
MELO3C003643.jh1.t1	MELO3C003643.jh1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
molecular_function	GO:0008168	methyltransferase activity