MELO3C003594 (gene) Melon (DHL92) v4

Overview
NameMELO3C003594
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionPentatricopeptide repeat-containing protein
Locationchr04: 2393065 .. 2393868 (+)
RNA-Seq ExpressionMELO3C003594
SyntenyMELO3C003594
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATTGCCGAACTCCCATCATTTTTTCCATTGAAAATTTGTACTAAAACTCAAATTATATTATACAATTAGACAAGGCTGTCACTCTCTGACTCTTTCCATTTCCACACAAAAAAAAAGCAAAATTAAAAATAAACTCTTTCGGCTGCTCTTTTCTTGTGTTTAAGAACAAACCAATCTCAATTCCCTTTTAAACCTACCATCCCCATATGATCTCCATTTTCCTCTCAACTTTTCTACCCTAATTTCATTGACCCTTTTGATTTCTGGTTCTATCTTTCATCTTTGAAGCTTCAATTTTGAAGAAAGAAAAATGGGAATGAAATGGCGAAATTCACGTAGTCAAAGCATCAGATTGGGACAGAGCTGTGTTTCTTCAAATGAACAAGAAAGCAAAAGATTGGGATGGCAAATTTTGTGGAGAAAATTGAAGAAGGAGAAGAGAAAAATGTTCAGTTGTTCTTCCGTTGAATTGTGTTCTTCTTATAATCCAAATGCTTATCACTTAAATTTTGATGAAGAAAATTGGGACTCTGAGCCTGATAATCTTTCCAGATCGTTCTCTGCTCGTTTTGCTGATCCTTCAATTGTTTCAAGAAACTTGAGATTGTTGGATTGAAATTTATTAGTAATAATCTTATGGGTTTTGTGTAATTTTTGTAACCCATTTTAGAAATTCCAAATGATTAGTTCTAAGTTGTGATTATGTGTTTGTTTCAATGAGACTAATTTTGTGTTCTGTTTATACTTTTCTTCAAATAGAAGAAAGAAGAAGAAGAGGAATATACTTTGTTGCAAATTACTG

mRNA sequence

AAATTGCCGAACTCCCATCATTTTTTCCATTGAAAATTTGTACTAAAACTCAAATTATATTATACAATTAGACAAGGCTGTCACTCTCTGACTCTTTCCATTTCCACACAAAAAAAAAGCAAAATTAAAAATAAACTCTTTCGGCTGCTCTTTTCTTGTGTTTAAGAACAAACCAATCTCAATTCCCTTTTAAACCTACCATCCCCATATGATCTCCATTTTCCTCTCAACTTTTCTACCCTAATTTCATTGACCCTTTTGATTTCTGGTTCTATCTTTCATCTTTGAAGCTTCAATTTTGAAGAAAGAAAAATGGGAATGAAATGGCGAAATTCACGTAGTCAAAGCATCAGATTGGGACAGAGCTGTGTTTCTTCAAATGAACAAGAAAGCAAAAGATTGGGATGGCAAATTTTGTGGAGAAAATTGAAGAAGGAGAAGAGAAAAATGTTCAGTTGTTCTTCCGTTGAATTGTGTTCTTCTTATAATCCAAATGCTTATCACTTAAATTTTGATGAAGAAAATTGGGACTCTGAGCCTGATAATCTTTCCAGATCGTTCTCTGCTCGTTTTGCTGATCCTTCAATTGTTTCAAGAAACTTGAGATTGTTGGATTGAAATTTATTAGTAATAATCTTATGGGTTTTGTGTAATTTTTGTAACCCATTTTAGAAATTCCAAATGATTAGTTCTAAGTTGTGATTATGTGTTTGTTTCAATGAGACTAATTTTGTGTTCTGTTTATACTTTTCTTCAAATAGAAGAAAGAAGAAGAAGAGGAATATACTTTGTTGCAAATTACTG

Coding sequence (CDS)

ATGGGAATGAAATGGCGAAATTCACGTAGTCAAAGCATCAGATTGGGACAGAGCTGTGTTTCTTCAAATGAACAAGAAAGCAAAAGATTGGGATGGCAAATTTTGTGGAGAAAATTGAAGAAGGAGAAGAGAAAAATGTTCAGTTGTTCTTCCGTTGAATTGTGTTCTTCTTATAATCCAAATGCTTATCACTTAAATTTTGATGAAGAAAATTGGGACTCTGAGCCTGATAATCTTTCCAGATCGTTCTCTGCTCGTTTTGCTGATCCTTCAATTGTTTCAAGAAACTTGAGATTGTTGGATTGA

Protein sequence

MGMKWRNSRSQSIRLGQSCVSSNEQESKRLGWQILWRKLKKEKRKMFSCSSVELCSSYNPNAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD
Homology
BLAST of MELO3C003594 vs. NCBI nr
Match: KGN60340.2 (hypothetical protein Csa_000895 [Cucumis sativus])

HSP 1 Score: 201.4 bits (511), Expect = 3.6e-48
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0

Query: 1    MGMKWRNSRSQSIRLGQSCVSSNEQESKRLGWQILWRKLKKEKRKMFSCSSVELCSSYNP 60
            MGMKWRNSRSQSIRLGQSCVSSNEQESKRLGWQILWRKLKKEKRKMFSCSSVEL SSYNP
Sbjct: 1030 MGMKWRNSRSQSIRLGQSCVSSNEQESKRLGWQILWRKLKKEKRKMFSCSSVELRSSYNP 1089

Query: 61   NAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD 102
            NAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD
Sbjct: 1090 NAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD 1130

BLAST of MELO3C003594 vs. NCBI nr
Match: XP_023536137.1 (uncharacterized protein LOC111797385 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-38
Identity = 85/102 (83.33%), Postives = 94/102 (92.16%), Query Frame = 0

Query: 1   MGMKWRNSRSQSIRLGQSCVSSNEQESKR-LGWQILWRKLKKEKRKMFSCSSVELCSSYN 60
           MG+KWRNSRSQSIRLGQSC SSNEQESKR LGWQILW+K KKEKR++FSCSSVEL SSYN
Sbjct: 1   MGIKWRNSRSQSIRLGQSCGSSNEQESKRLLGWQILWQKFKKEKRRIFSCSSVELRSSYN 60

Query: 61  PNAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD 102
           PNAY LNF++ENW S+PD+L RSFSARFADPSIVSR+ RLLD
Sbjct: 61  PNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRLLD 102

BLAST of MELO3C003594 vs. NCBI nr
Match: XP_022936244.1 (uncharacterized protein LOC111442916 [Cucurbita moschata] >KAG7024534.1 hypothetical protein SDJN02_13350, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-38
Identity = 85/102 (83.33%), Postives = 94/102 (92.16%), Query Frame = 0

Query: 1   MGMKWRNSRSQSIRLGQSCVSSNEQESKRL-GWQILWRKLKKEKRKMFSCSSVELCSSYN 60
           MG+KWRNSRSQSIRLGQSC SSNEQESKRL GWQILW+K KKEKR++FSCSSVEL SSYN
Sbjct: 1   MGIKWRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYN 60

Query: 61  PNAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD 102
           PNAY LNF++ENW S+PD+L RSFSARFADPSIVSR+ RLLD
Sbjct: 61  PNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRLLD 102

BLAST of MELO3C003594 vs. NCBI nr
Match: KAG6591653.1 (hypothetical protein SDJN03_13999, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167.2 bits (422), Expect = 7.5e-38
Identity = 84/102 (82.35%), Postives = 93/102 (91.18%), Query Frame = 0

Query: 1   MGMKWRNSRSQSIRLGQSCVSSNEQESKRL-GWQILWRKLKKEKRKMFSCSSVELCSSYN 60
           MG+KWRNSRSQSIRLGQSC S NEQESKRL GWQILW+K KKEKR++FSCSSVEL SSYN
Sbjct: 1   MGIKWRNSRSQSIRLGQSCGSWNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYN 60

Query: 61  PNAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD 102
           PNAY LNF++ENW S+PD+L RSFSARFADPSIVSR+ RLLD
Sbjct: 61  PNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRLLD 102

BLAST of MELO3C003594 vs. NCBI nr
Match: ONI33933.1 (hypothetical protein PRUPE_1G454200 [Prunus persica])

HSP 1 Score: 94.4 bits (233), Expect = 6.2e-16
Identity = 58/105 (55.24%), Postives = 70/105 (66.67%), Query Frame = 0

Query: 1   MGMK-WRNSRSQSIRLGQSCVSSNEQESKRLGWQILWRKLKKE-KRKMFSCSSV-ELCSS 60
           MG+K W NSRSQS+RLGQ  + SN  +  R GWQ  W+K K + K+K FS S+V    +S
Sbjct: 1   MGIKEWCNSRSQSMRLGQPYMPSNYNKPDRPGWQRFWKKFKMDKKKKSFSSSTVTPQAAS 60

Query: 61  YNPNAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLR-LLD 102
           Y+P  Y  NFD      EPDNLSRSFSARFADPS++  N R LLD
Sbjct: 61  YDPKTYSKNFDRGMGSMEPDNLSRSFSARFADPSMILHNNRNLLD 105

BLAST of MELO3C003594 vs. ExPASy TrEMBL
Match: A0A0A0LJH9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G888550 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.7e-48
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0

Query: 1   MGMKWRNSRSQSIRLGQSCVSSNEQESKRLGWQILWRKLKKEKRKMFSCSSVELCSSYNP 60
           MGMKWRNSRSQSIRLGQSCVSSNEQESKRLGWQILWRKLKKEKRKMFSCSSVEL SSYNP
Sbjct: 1   MGMKWRNSRSQSIRLGQSCVSSNEQESKRLGWQILWRKLKKEKRKMFSCSSVELRSSYNP 60

Query: 61  NAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD 102
           NAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD
Sbjct: 61  NAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD 101

BLAST of MELO3C003594 vs. ExPASy TrEMBL
Match: A0A6J1F7R9 (uncharacterized protein LOC111442916 OS=Cucurbita moschata OX=3662 GN=LOC111442916 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.6e-39
Identity = 85/102 (83.33%), Postives = 94/102 (92.16%), Query Frame = 0

Query: 1   MGMKWRNSRSQSIRLGQSCVSSNEQESKRL-GWQILWRKLKKEKRKMFSCSSVELCSSYN 60
           MG+KWRNSRSQSIRLGQSC SSNEQESKRL GWQILW+K KKEKR++FSCSSVEL SSYN
Sbjct: 1   MGIKWRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYN 60

Query: 61  PNAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD 102
           PNAY LNF++ENW S+PD+L RSFSARFADPSIVSR+ RLLD
Sbjct: 61  PNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRLLD 102

BLAST of MELO3C003594 vs. ExPASy TrEMBL
Match: A0A251RD41 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G454200 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.0e-16
Identity = 58/105 (55.24%), Postives = 70/105 (66.67%), Query Frame = 0

Query: 1   MGMK-WRNSRSQSIRLGQSCVSSNEQESKRLGWQILWRKLKKE-KRKMFSCSSV-ELCSS 60
           MG+K W NSRSQS+RLGQ  + SN  +  R GWQ  W+K K + K+K FS S+V    +S
Sbjct: 1   MGIKEWCNSRSQSMRLGQPYMPSNYNKPDRPGWQRFWKKFKMDKKKKSFSSSTVTPQAAS 60

Query: 61  YNPNAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLR-LLD 102
           Y+P  Y  NFD      EPDNLSRSFSARFADPS++  N R LLD
Sbjct: 61  YDPKTYSKNFDRGMGSMEPDNLSRSFSARFADPSMILHNNRNLLD 105

BLAST of MELO3C003594 vs. ExPASy TrEMBL
Match: A0A6J5TRF8 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS8866 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 5.1e-16
Identity = 58/105 (55.24%), Postives = 70/105 (66.67%), Query Frame = 0

Query: 1   MGMK-WRNSRSQSIRLGQSCVSSNEQESKRLGWQILWRKLKKE-KRKMFSCSSV-ELCSS 60
           MG+K W NSRSQSIRLGQ  +SSN  +  + GWQ  W+K K + K+K FS S+V    +S
Sbjct: 1   MGIKEWCNSRSQSIRLGQPYMSSNYNKPDQPGWQRFWKKFKMDKKKKSFSSSTVTPQAAS 60

Query: 61  YNPNAYHLNFDEENWDSEPDNLSRSFSARFADPS-IVSRNLRLLD 102
           Y+P  Y  NFD      EPDNLSR FSARFADPS I+ +N  LLD
Sbjct: 61  YDPKTYSKNFDPGMGSMEPDNLSRCFSARFADPSMILHKNRNLLD 105

BLAST of MELO3C003594 vs. ExPASy TrEMBL
Match: A0A5N5I1S5 (Pentatricopeptide repeat-containing protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_034369 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.6e-14
Identity = 51/105 (48.57%), Postives = 69/105 (65.71%), Query Frame = 0

Query: 1   MGMK-WRNSRSQSIRLGQSCVSSNEQESKRLGWQILWRKLKKEKRKMFSCSSV--ELCSS 60
           MG++ WRNSRSQSIRLG +    +     + GWQ  W++ K E++K+F  S+V  +  +S
Sbjct: 1   MGIREWRNSRSQSIRLGHNYDMPSNYNKSQPGWQKFWKRFKIERKKIFGSSTVMPQAQAS 60

Query: 61  YNPNAYHLNFDEENWDSEPDNLSRSFSARFADPS-IVSRNLRLLD 102
           Y+P+ Y  NFD+     EPDNL RSFSARFADPS ++  N  LLD
Sbjct: 61  YDPDTYSKNFDQGTQWMEPDNLPRSFSARFADPSRVLHGNRNLLD 105

BLAST of MELO3C003594 vs. TAIR 10
Match: AT2G25735.1 (unknown protein; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-05
Identity = 36/99 (36.36%), Postives = 54/99 (54.55%), Query Frame = 0

Query: 7   NSRSQSIRLGQSCVSSNEQESKRLGWQIL--WRKLKKEKRKMFSCSSVELCSSYNPNAYH 66
           +S  ++I LG+   S  EQ+  +   ++L  W+ L  + + + S +S     +Y P  Y 
Sbjct: 20  SSHRETIVLGRYSKSCREQKQHQRRERLLPKWKVLLMKLKLLPSRASSTKVVAYEPCDYS 79

Query: 67  LNFDE-ENW--DSEPDNLSRSFSARFADPSIVSRNLRLL 101
           LNFD+   W    EP+NLSRSFS RFADP+ +     LL
Sbjct: 80  LNFDQGPGWHDHDEPENLSRSFSCRFADPTRIRETRFLL 118

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN60340.23.6e-4899.01hypothetical protein Csa_000895 [Cucumis sativus][more]
XP_023536137.11.2e-3883.33uncharacterized protein LOC111797385 [Cucurbita pepo subsp. pepo][more]
XP_022936244.11.2e-3883.33uncharacterized protein LOC111442916 [Cucurbita moschata] >KAG7024534.1 hypothet... [more]
KAG6591653.17.5e-3882.35hypothetical protein SDJN03_13999, partial [Cucurbita argyrosperma subsp. sorori... [more]
ONI33933.16.2e-1655.24hypothetical protein PRUPE_1G454200 [Prunus persica][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LJH91.7e-4899.01Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G888550 PE=4 SV=1[more]
A0A6J1F7R95.6e-3983.33uncharacterized protein LOC111442916 OS=Cucurbita moschata OX=3662 GN=LOC1114429... [more]
A0A251RD413.0e-1655.24Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G454200 PE=4 SV=1[more]
A0A6J5TRF85.1e-1655.24Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS8866 PE=4 SV... [more]
A0A5N5I1S51.6e-1448.57Pentatricopeptide repeat-containing protein OS=Pyrus ussuriensis x Pyrus communi... [more]
Match NameE-valueIdentityDescription
AT2G25735.11.1e-0536.36unknown protein; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bact... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33168:SF35SUBFAMILY NOT NAMEDcoord: 8..100
NoneNo IPR availablePANTHERPTHR33168STRESS INDUCED PROTEIN-RELATEDcoord: 8..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C003594.1MELO3C003594.1mRNA