MELO3C003546.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C003546.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	28 kDa ribonucleoprotein, chloroplastic-like
Location	chr04: 2045315 .. 2047456 (+)
RNA-Seq Expression	MELO3C003546.jh1
Synteny	MELO3C003546.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTATTTGTGTTAACTCTATGTTGCTTTCAAACTAGAAGAGAGTGAACAGAGTGCGGTGAGCTCCGGCGATGGCTTCGGTTCGTCTTCCTTGTTCTTCATCTTCCTCAATCCTTCGCTCTAAACAACACCACCATATTTTTCTCGCACCTCTCTCATGTTCGCAAAATCCATCTTATCCCATCAATGGAGACTTCAATCTCTCTGTCTCCCGCTCTTCTCCATCTCTTCTTTCAACTTCCATCTGCCACAATCCTTTGATTTCAATTATGGCTAAGAGAACCAGCAAGTTTGTCTTCCAGTTCGCCTCAACATCCCAAGACGAAGCAGTTTCGAGCTCGCCTTCTGATATTGAAGAATTTTCTCGAACTAGACTGCTTGCTCAGAATGTGCCTTGGGATTCTACTCCGGAGGATATTCGTTCTCTGTTTGAGAAATATGGTACGGTCCTGGATGTGGAGGTATGCAATATTAGTTTGTTTTAGTGTAAGAACATTTTCTCTTTCAATTTCTGTTTGACGGTTTTGGTTTATTGTAAATTGATGATCGGTGTCTTTTTTTCAGCTTTCTATGTATAACAAGATTAGAAACAGAGGCTTGGCGTTTGTCACTATGGGATCACCGGAGGAAGCCCTTGCTGCGCTTAACAATCTCGAATCGTATGTAAGCAGGACGATGTTTTTCTTAGAATGATTTTCAATTTTTTTACTATGTTCAATTTTGTCACTGAGGCTTAAAACAATATTTACCCTCCATTATGAAAAAACTTTCTCGATAGAAATTAATCGCGTTTGCCTCTAGTTTGATTTGCTTCTGTGTGATCCATAAATAGAGTCGAACATAGTAAAATAAGCAATTGAAAGATTTATGAAATTGTTCGTTTGGAAATTTTCTGAAAAGCTATCATAGATTCTTCTTTCCATCGGAACAATCGGGTCATTAAGCTTATTACAAAACTTGTTGAAGAGATGAAAAGTAACCAAGATATATCTTTTTTATTAGAGCTTGAATGGATTATCAGAAGTAGAACTAGGCAAAAGAAAAATTAGGATACATTCTCGAAAAATAAAACTAAGCTTGCATCCTGCTTGTGTGTGTTGCAGCTGCATTTCAATTTTGGTTAAAGCAAAGAATACAGTGTTTCCATTCATTTCAAAACTTAGATGATCCCTTCCCGTATTAAACACGAATCTTCTGATTCATTTGCCTCTCACTCCCATTTATTGCAATTGTTTCTGTCTCTGAGAAATTCCCATGTGTTATTTTGAACTCTTGTTGGCTTTGTTTAATGAAATGGTTAACATAAATGCAGGAATTTGAGGGTCGTACTCTGAGGCTCAATTATGCTAAGCTTAAAAAGGAGAAACCCTCCCCTCCTGTGAAACCAAAACCCGTTACGTTTAATTTGTTTGTGGCAAATTTGCCATTTGAAGCAAGAGCAAAGGACCTCAGAGAGTTCTTCGATTCAGGGAGTGGTAATGTAGTGTCTGCACAAATTATTTTTCATGAGAATCCGAGAAGGTCTTCTGGATATGGTTTTGTTGCCTTCAAAGCCAAGAAGGATGCTGAAGCAGCTATTTCTGAGTTCCAAGGGAAGGTAATTTCAATATTGTTACAATCCCCTTTATTAAATGAATAGCCATAGAACCATTCAAATGTGAATATCACCATTTTATGAGGCTTCATCTGATAAAGTGCAGACCTTTATGGGGAGATCACTTCGTGTTGCACGTAGTAAGCAGTTTGTGAAACTTCCTTCAGAAGAGAAATCCCAATCTGAAGATGCATCTACTGATGGTGTGGAGCTAGCCAATGCCGCTGCTGAAGTTTAAAATACTTAAGCTTCTCACTAGAAGAACTAAGGAGTTTGCTATCAACCTTTCTTTCTTTCTTTTTCTTCTTCTTTCTTTTTTTGGAGGTAATGCTATCTAGTTATTCAATTAAGGAGCGCGCCACTTTTCTTTTTCTTTTACCTATAAATGTCCAACATCTAATGTTTAAAGGATTCAAAGTTGGATACCCCAACAGAATGGGCACATCACTGAAAAATCCCCATATGGATTAACGAGTGTATATTAGATCATTTTTGTATCCTTTTCTCTATTGATTTGACTCTAGCTCCCCTGAGTGATTTAAGATA

mRNA sequence

ATGGCGTATTTGTGTTAACTCTATGTTGCTTTCAAACTAGAAGAGAGTGAACAGAGTGCGGTGAGCTCCGGCGATGGCTTCGGTTCGTCTTCCTTGTTCTTCATCTTCCTCAATCCTTCGCTCTAAACAACACCACCATATTTTTCTCGCACCTCTCTCATGTTCGCAAAATCCATCTTATCCCATCAATGGAGACTTCAATCTCTCTGTCTCCCGCTCTTCTCCATCTCTTCTTTCAACTTCCATCTGCCACAATCCTTTGATTTCAATTATGGCTAAGAGAACCAGCAAGTTTGTCTTCCAGTTCGCCTCAACATCCCAAGACGAAGCAGTTTCGAGCTCGCCTTCTGATATTGAAGAATTTTCTCGAACTAGACTGCTTGCTCAGAATGTGCCTTGGGATTCTACTCCGGAGGATATTCGTTCTCTGTTTGAGAAATATGGTACGGTCCTGGATGTGGAGCTTTCTATGTATAACAAGATTAGAAACAGAGGCTTGGCGTTTGTCACTATGGGATCACCGGAGGAAGCCCTTGCTGCGCTTAACAATCTCGAATCGTATGAATTTGAGGGTCGTACTCTGAGGCTCAATTATGCTAAGCTTAAAAAGGAGAAACCCTCCCCTCCTGTGAAACCAAAACCCGTTACGTTTAATTTGTTTGTGGCAAATTTGCCATTTGAAGCAAGAGCAAAGGACCTCAGAGAGTTCTTCGATTCAGGGAGTGGTAATGTAGTGTCTGCACAAATTATTTTTCATGAGAATCCGAGAAGGTCTTCTGGATATGGTTTTGTTGCCTTCAAAGCCAAGAAGGATGCTGAAGCAGCTATTTCTGAGTTCCAAGGGAAGACCTTTATGGGGAGATCACTTCGTGTTGCACGTAGTAAGCAGTTTGTGAAACTTCCTTCAGAAGAGAAATCCCAATCTGAAGATGCATCTACTGATGGTGTGGAGCTAGCCAATGCCGCTGCTGAAGTTTAAAATACTTAAGCTTCTCACTAGAAGAACTAAGGAGTTTGCTATCAACCTTTCTTTCTTTCTTTTTCTTCTTCTTTCTTTTTTTGGAGGTAATGCTATCTAGTTATTCAATTAAGGAGCGCGCCACTTTTCTTTTTCTTTTACCTATAAATGTCCAACATCTAATGTTTAAAGGATTCAAAGTTGGATACCCCAACAGAATGGGCACATCACTGAAAAATCCCCATATGGATTAACGAGTGTATATTAGATCATTTTTGTATCCTTTTCTCTATTGATTTGACTCTAGCTCCCCTGAGTGATTTAAGATA

Coding sequence (CDS)

ATGGCTTCGGTTCGTCTTCCTTGTTCTTCATCTTCCTCAATCCTTCGCTCTAAACAACACCACCATATTTTTCTCGCACCTCTCTCATGTTCGCAAAATCCATCTTATCCCATCAATGGAGACTTCAATCTCTCTGTCTCCCGCTCTTCTCCATCTCTTCTTTCAACTTCCATCTGCCACAATCCTTTGATTTCAATTATGGCTAAGAGAACCAGCAAGTTTGTCTTCCAGTTCGCCTCAACATCCCAAGACGAAGCAGTTTCGAGCTCGCCTTCTGATATTGAAGAATTTTCTCGAACTAGACTGCTTGCTCAGAATGTGCCTTGGGATTCTACTCCGGAGGATATTCGTTCTCTGTTTGAGAAATATGGTACGGTCCTGGATGTGGAGCTTTCTATGTATAACAAGATTAGAAACAGAGGCTTGGCGTTTGTCACTATGGGATCACCGGAGGAAGCCCTTGCTGCGCTTAACAATCTCGAATCGTATGAATTTGAGGGTCGTACTCTGAGGCTCAATTATGCTAAGCTTAAAAAGGAGAAACCCTCCCCTCCTGTGAAACCAAAACCCGTTACGTTTAATTTGTTTGTGGCAAATTTGCCATTTGAAGCAAGAGCAAAGGACCTCAGAGAGTTCTTCGATTCAGGGAGTGGTAATGTAGTGTCTGCACAAATTATTTTTCATGAGAATCCGAGAAGGTCTTCTGGATATGGTTTTGTTGCCTTCAAAGCCAAGAAGGATGCTGAAGCAGCTATTTCTGAGTTCCAAGGGAAGACCTTTATGGGGAGATCACTTCGTGTTGCACGTAGTAAGCAGTTTGTGAAACTTCCTTCAGAAGAGAAATCCCAATCTGAAGATGCATCTACTGATGGTGTGGAGCTAGCCAATGCCGCTGCTGAAGTTTAA

Protein sequence

MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICHNPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVELANAAAEV

Homology

[Close]

BLAST of MELO3C003546.jh1 vs. NCBI nr
Match: XP_008466190.1 (PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >KAA0038685.1 31 kDa ribonucleoprotein [Cucumis melo var. makuwa] >TYK31295.1 31 kDa ribonucleoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 573 bits (1477), Expect = 1.10e-205
Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 0


Query: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60
           MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH
Sbjct: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60

Query: 61  NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLF 120
           NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLF
Sbjct: 61  NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180
           EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE
Sbjct: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVELANAAAE 300
           AFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVELANAAAE
Sbjct: 241 AFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVELANAAAE 300

[Close]

BLAST of MELO3C003546.jh1 vs. NCBI nr
Match: XP_004136268.1 (28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN60238.1 hypothetical protein Csa_002107 [Cucumis sativus])

HSP 1 Score: 540 bits (1390), Expect = 1.92e-192
Identity = 286/301 (95.02%), Postives = 292/301 (97.01%), Query Frame = 0


Query: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60
           MASVRLPCSSSSSILRSK HH IFLAPLSCSQNPSYPINGDFNLS+SRSSPSLLSTSI H
Sbjct: 1   MASVRLPCSSSSSILRSKHHHQIFLAPLSCSQNPSYPINGDFNLSISRSSPSLLSTSISH 60

Query: 61  NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLF 120
           +PLISI AKRTS FVFQFASTSQDEAV SSPSD EEFS+TRLLAQNVPWDSTPEDIRSLF
Sbjct: 61  SPLISIRAKRTSTFVFQFASTSQDEAV-SSPSDTEEFSQTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180
           EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE
Sbjct: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKPKPVTFNLFVANLPF+ARAKDL+EFFDSGSGNVVSAQIIF+ENPRRSSGYGFV
Sbjct: 181 KPSPPVKPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFV 240

Query: 241 AFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVELANAAAE 300
           AFK KKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEK QSEDASTDGVELANAAAE
Sbjct: 241 AFKTKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKPQSEDASTDGVELANAAAE 300

[Close]

BLAST of MELO3C003546.jh1 vs. NCBI nr
Match: XP_038897887.1 (31 kDa ribonucleoprotein, chloroplastic [Benincasa hispida])

HSP 1 Score: 537 bits (1384), Expect = 1.64e-191
Identity = 285/301 (94.68%), Postives = 288/301 (95.68%), Query Frame = 0


Query: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60
           MA VRLPCSSSSS LRSKQ H IFLAPLSC QNPSYPINGDFNLS+SRSSPSLLSTSI H
Sbjct: 1   MALVRLPCSSSSSFLRSKQQHLIFLAPLSCPQNPSYPINGDFNLSISRSSPSLLSTSIGH 60

Query: 61  NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLF 120
           NPLISI  KRTSKFVFQFASTSQDEAV+SSPSD EEFS+TRLLAQNVPW STPEDIRSLF
Sbjct: 61  NPLISIRGKRTSKFVFQFASTSQDEAVASSPSDSEEFSQTRLLAQNVPWSSTPEDIRSLF 120

Query: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180
           EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE
Sbjct: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVELANAAAE 300
           AFK KKDAEAAISEFQGK FMGRSLRVARSKQFVKLPSEEKSQSEDASTD VELANAAAE
Sbjct: 241 AFKTKKDAEAAISEFQGKIFMGRSLRVARSKQFVKLPSEEKSQSEDASTDDVELANAAAE 300

[Close]

BLAST of MELO3C003546.jh1 vs. NCBI nr
Match: XP_022937168.1 (28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata] >KAG6591682.1 RNA-binding protein CP33, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 492 bits (1267), Expect = 1.09e-173
Identity = 260/301 (86.38%), Postives = 274/301 (91.03%), Query Frame = 0


Query: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60
           MA VRLPCSSSS  LRS Q + +F++PLSC QNPSY  NGD  LS+SRSS SL ST + H
Sbjct: 1   MALVRLPCSSSSLFLRSNQQNLVFISPLSCPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60

Query: 61  NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLF 120
           NPL SI AKRT KFVFQ ASTSQD+AV+SS SD EEFSR RLLAQNVPWDSTPEDIRSLF
Sbjct: 61  NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180
           EKYGTV+DVELSMYNKIRNRGLAFVTMGSPEEALAA+NNLESYEF GRTL+LNYAK+KKE
Sbjct: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKP PVTFNLFVANLPF+ARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVELANAAAE 300
           AFK KKDAEAAISEFQGK FMGRSLRVARSKQFVKLPSEEKSQSED STDGVELA+AAAE
Sbjct: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE 300

[Close]

BLAST of MELO3C003546.jh1 vs. NCBI nr
Match: XP_022975867.1 (28 kDa ribonucleoprotein, chloroplastic [Cucurbita maxima])

HSP 1 Score: 489 bits (1259), Expect = 1.80e-172
Identity = 258/301 (85.71%), Postives = 273/301 (90.70%), Query Frame = 0


Query: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60
           MA VRLPCSSS   LRS Q + +F+APLSC QNPSY  NGD  LS+SRSS SL ST + H
Sbjct: 1   MALVRLPCSSSFLFLRSNQQNLVFIAPLSCLQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60

Query: 61  NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLF 120
           NPL SI AKRT KFVFQ ASTSQD+A++SS SD EEFSRTRLLAQNVPWDSTPEDIRSLF
Sbjct: 61  NPLTSIRAKRTRKFVFQLASTSQDDAIASSSSDAEEFSRTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180
           EKYGTV+DVELSMYNKIRNRGLAFVTMGSPEEALAA+NNLESYEF GRTL+LNYAK+KKE
Sbjct: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKP PVTFNLFVANLPF+ARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVELANAAAE 300
           AFK KKDAEAAISEFQGK FMGRSLRVARSKQFVKLPSEE SQS+D STDGVELA+AAAE
Sbjct: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEENSQSDDTSTDGVELASAAAE 300

[Close]

BLAST of MELO3C003546.jh1 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.0e-20
Identity = 86/307 (28.01%), Postives = 153/307 (49.84%), Query Frame = 0


Query: 33  NPSYPINGDFNLSVSRSSPSLLSTSICHNPLISIMAKRTSKFVFQF---ASTSQDEAVSS 92
           NP    + +  L    +  S    + C NPLI     R  +F       AS++ DE  +S
Sbjct: 25  NPLLSSHSNSQLFYRFTPKSFKLVANCPNPLILHSNIRRHRFFCAAETEASSADDEIQAS 84

Query: 93  -------------SPSDIEEFSRT--------RLLAQNVPWDSTPEDIRSLFEKYGTVLD 152
                           ++EE  +T        RL   N+P+  T  ++  +F + GTV+D
Sbjct: 85  VEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVD 144

Query: 153 VELSMYNKI--RNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKEKPSPPV 212
           V++ +Y+K+  R+RG  FVTMGS EEA  A+    S +  GRT+++N+ ++ +   +  +
Sbjct: 145 VQI-VYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVM 204

Query: 213 KPKPVTFN---------LFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGY 272
           + K    N         ++  NL +   ++ L++ F    G V+ A++I+  N  RS G+
Sbjct: 205 RTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPG-VLGAKVIYERNTGRSRGF 264

Query: 273 GFVAFKAKKDAEAAISEFQGKTFMGRSLRV----ARSKQFVKLPSEEKSQSEDASTDGVE 300
           GF++F++ ++ ++A++   G    GR+LR+     R K  V  PS E+ ++E+AS +  E
Sbjct: 265 GFISFESAENVQSALATMNGVEVEGRALRLNLASEREKPTVSPPSVEEGETEEASLESNE 324

[Close]

BLAST of MELO3C003546.jh1 vs. ExPASy Swiss-Prot
Match: P19682 (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.9e-19
Identity = 68/239 (28.45%), Postives = 121/239 (50.63%), Query Frame = 0


Query: 44  LSVSRSSPSLLS---TSICHNPLISIMAKRTSKFVFQFASTSQD-EAVSSSPSDIEEFSR 103
           +S+S S P+LLS    +      +S++++  +  V        D  +      + EE+  
Sbjct: 33  ISLSSSLPTLLSLNKRTTQFPTFVSVLSEDDNTLVLDDQEQGGDFPSFVGEAGETEEYQE 92

Query: 104 ----TRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNK--IRNRGLAFVTMGSPEEA 163
                +L   N+P+D   E +  LF++ G V+++   +YN+   R+RG  FVTM + EEA
Sbjct: 93  PSEDAKLFVGNLPYDIDSEGLAQLFQQAG-VVEIAEVIYNRETDRSRGFGFVTMSTVEEA 152

Query: 164 LAALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPFEARAKDLREFF 223
             A+     Y+  GR L +N A  +  +P    +    T+ ++V N+P++     L + F
Sbjct: 153 DKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVF 212

Query: 224 DSGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKTFMGRSLRVARSKQ 273
            S  G VVSA+++F     RS G+GFV   ++ +   AI+   G+T  GR++RV  +++
Sbjct: 213 -SEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEE 269

[Close]

BLAST of MELO3C003546.jh1 vs. ExPASy Swiss-Prot
Match: P19683 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 8.3e-19
Identity = 61/200 (30.50%), Postives = 104/200 (52.00%), Query Frame = 0


Query: 74  FVFQFASTSQDEAVSSSPSDIEEFSR----TRLLAQNVPWDSTPEDIRSLFEKYGTVLDV 133
           FV       + + V +   + EEF       +L   N+P+D   E +  LFE+ G V+++
Sbjct: 107 FVEAVGDAGESDEVEADEEE-EEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAG-VVEI 166

Query: 134 ELSMYNK--IRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKEKPSPPVK 193
              +YN+   ++RG  FVTM + EEA  A+     Y+  GR L +N A  + E+P  P +
Sbjct: 167 AEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPR 226

Query: 194 PKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKD 253
               ++ ++V N+P+      L + F S  G VVSA++++     RS G+GFV   ++ +
Sbjct: 227 TFEQSYRIYVGNIPWGIDDARLEQLF-SEHGKVVSARVVYDRETGRSRGFGFVTMASEAE 286

Query: 254 AEAAISEFQGKTFMGRSLRV 268
              AI+   G++  GR++RV
Sbjct: 287 MSDAIANLDGQSLDGRTIRV 303

[Close]

BLAST of MELO3C003546.jh1 vs. ExPASy Swiss-Prot
Match: P28644 (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.0e-17
Identity = 58/188 (30.85%), Postives = 94/188 (50.00%), Query Frame = 0


Query: 82  SQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNK--IRN 141
           S +  V       E     +L   N+P+D   E +  +F+  G V+++   +YN+   R+
Sbjct: 37  SDEGGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAG-VVEIAEVIYNRETDRS 96

Query: 142 RGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVAN 201
           RG  FVTM + EEA  A+  L  Y+ +GR L +N A  +      P      +  ++V N
Sbjct: 97  RGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGN 156

Query: 202 LPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKT 261
           LP++     L + F S  G VVSA+++      RS G+GFV   ++ +   AI+   G+T
Sbjct: 157 LPWDVDTSRLEQLF-SEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQT 216

Query: 262 FMGRSLRV 268
             GR++RV
Sbjct: 217 LDGRAVRV 222

[Close]

BLAST of MELO3C003546.jh1 vs. ExPASy Swiss-Prot
Match: P49314 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-15
Identity = 77/263 (29.28%), Postives = 121/263 (46.01%), Query Frame = 0


Query: 42  FNLSVSRSSPSLLSTSICHN----PLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEF 101
           F+L  S  + SL S+SI H+    P  S  + R +  +  F     D  V+  P   E+ 
Sbjct: 31  FSLPSSSLNLSLSSSSIGHSASIKPFESSFSTRVA--LSDFDQLEDDVEVAEQPRFSEDL 90

Query: 102 SRTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKI--RNRGLAFVTMGSPEEALA 161
              +L   N+P+      +  LFE+ G V  VE+ +Y+K+  R+RG  FVTM + EE  A
Sbjct: 91  ---KLFVGNLPFSVDSAALAGLFERAGNVEIVEV-IYDKLSGRSRGFGFVTMSTKEEVEA 150

Query: 162 ALNNLESYEFEGRTLRLNY--AKLKKEKPS------------------------PPVKPK 221
           A      YE +GR +R+N   A  K+E  S                           +  
Sbjct: 151 AEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSV 210

Query: 222 PVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAE 273
             +  ++V NL +      L+E F S  GNVV A++++  +  RS G+GFV + + K+  
Sbjct: 211 DSSNRVYVGNLSWGVDDLALKELF-SEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVN 270

[Close]

BLAST of MELO3C003546.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TBD1 (31 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005930 PE=4 SV=1)

HSP 1 Score: 573 bits (1477), Expect = 5.31e-206
Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 0


Query: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60
           MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH
Sbjct: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60

Query: 61  NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLF 120
           NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLF
Sbjct: 61  NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180
           EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE
Sbjct: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVELANAAAE 300
           AFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVELANAAAE
Sbjct: 241 AFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVELANAAAE 300

[Close]

BLAST of MELO3C003546.jh1 vs. ExPASy TrEMBL
Match: A0A1S3CS17 (31 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503681 PE=4 SV=1)

HSP 1 Score: 573 bits (1477), Expect = 5.31e-206
Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 0


Query: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60
           MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH
Sbjct: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60

Query: 61  NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLF 120
           NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLF
Sbjct: 61  NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180
           EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE
Sbjct: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVELANAAAE 300
           AFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVELANAAAE
Sbjct: 241 AFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVELANAAAE 300

[Close]

BLAST of MELO3C003546.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LEN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889940 PE=4 SV=1)

HSP 1 Score: 540 bits (1390), Expect = 9.30e-193
Identity = 286/301 (95.02%), Postives = 292/301 (97.01%), Query Frame = 0


Query: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60
           MASVRLPCSSSSSILRSK HH IFLAPLSCSQNPSYPINGDFNLS+SRSSPSLLSTSI H
Sbjct: 1   MASVRLPCSSSSSILRSKHHHQIFLAPLSCSQNPSYPINGDFNLSISRSSPSLLSTSISH 60

Query: 61  NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLF 120
           +PLISI AKRTS FVFQFASTSQDEAV SSPSD EEFS+TRLLAQNVPWDSTPEDIRSLF
Sbjct: 61  SPLISIRAKRTSTFVFQFASTSQDEAV-SSPSDTEEFSQTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180
           EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE
Sbjct: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKPKPVTFNLFVANLPF+ARAKDL+EFFDSGSGNVVSAQIIF+ENPRRSSGYGFV
Sbjct: 181 KPSPPVKPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFV 240

Query: 241 AFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVELANAAAE 300
           AFK KKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEK QSEDASTDGVELANAAAE
Sbjct: 241 AFKTKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKPQSEDASTDGVELANAAAE 300

[Close]

BLAST of MELO3C003546.jh1 vs. ExPASy TrEMBL
Match: A0A6J1FF97 (28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111443545 PE=4 SV=1)

HSP 1 Score: 492 bits (1267), Expect = 5.28e-174
Identity = 260/301 (86.38%), Postives = 274/301 (91.03%), Query Frame = 0


Query: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60
           MA VRLPCSSSS  LRS Q + +F++PLSC QNPSY  NGD  LS+SRSS SL ST + H
Sbjct: 1   MALVRLPCSSSSLFLRSNQQNLVFISPLSCPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60

Query: 61  NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLF 120
           NPL SI AKRT KFVFQ ASTSQD+AV+SS SD EEFSR RLLAQNVPWDSTPEDIRSLF
Sbjct: 61  NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAEEFSRNRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180
           EKYGTV+DVELSMYNKIRNRGLAFVTMGSPEEALAA+NNLESYEF GRTL+LNYAK+KKE
Sbjct: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKP PVTFNLFVANLPF+ARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVELANAAAE 300
           AFK KKDAEAAISEFQGK FMGRSLRVARSKQFVKLPSEEKSQSED STDGVELA+AAAE
Sbjct: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTDGVELASAAAE 300

[Close]

BLAST of MELO3C003546.jh1 vs. ExPASy TrEMBL
Match: A0A6J1IE80 (28 kDa ribonucleoprotein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111476441 PE=4 SV=1)

HSP 1 Score: 489 bits (1259), Expect = 8.73e-173
Identity = 258/301 (85.71%), Postives = 273/301 (90.70%), Query Frame = 0


Query: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60
           MA VRLPCSSS   LRS Q + +F+APLSC QNPSY  NGD  LS+SRSS SL ST + H
Sbjct: 1   MALVRLPCSSSFLFLRSNQQNLVFIAPLSCLQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60

Query: 61  NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLF 120
           NPL SI AKRT KFVFQ ASTSQD+A++SS SD EEFSRTRLLAQNVPWDSTPEDIRSLF
Sbjct: 61  NPLTSIRAKRTRKFVFQLASTSQDDAIASSSSDAEEFSRTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180
           EKYGTV+DVELSMYNKIRNRGLAFVTMGSPEEALAA+NNLESYEF GRTL+LNYAK+KKE
Sbjct: 121 EKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKP PVTFNLFVANLPF+ARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVELANAAAE 300
           AFK KKDAEAAISEFQGK FMGRSLRVARSKQFVKLPSEE SQS+D STDGVELA+AAAE
Sbjct: 241 AFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEENSQSDDTSTDGVELASAAAE 300

[Close]

BLAST of MELO3C003546.jh1 vs. TAIR 10
Match: AT4G09040.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 267.3 bits (682), Expect = 1.5e-71
Identity = 147/272 (54.04%), Postives = 193/272 (70.96%), Query Frame = 0


Query: 39  NGDFNLSVSRSSPSLLSTSIC----HNPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDI 98
           N + N++ +  S SL + S+C    H      +  ++      F++T+Q+  + SS S  
Sbjct: 22  NPNPNVAFTNHSLSLSTPSLCRLHRHATFPDSIPAKSRNLTSYFSTTTQEPVLESSSSSS 81

Query: 99  -------EEFSRTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTM 158
                  EE S+TRL+AQNVPW STPEDIRSLFEKYG+V+D+E+SM+ K RNRGL F+ M
Sbjct: 82  SAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEM 141

Query: 159 GSPEEALAALNNLESYEFEGRTLRLNYAKLKKEKP-SPPVKPKPV-TFNLFVANLPFEAR 218
            SPEEA  AL +LES E+EGR L+++YAK KK+K  +P   P PV TFNLFVANL FEAR
Sbjct: 142 ASPEEAATALKSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEAR 201

Query: 219 AKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKTFMGRSL 278
           AK L+EFFD+ +GNVVS ++IFHENPRRSSGYGFV+FK KK AEAA+ EFQGK F+GR +
Sbjct: 202 AKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPI 261

Query: 279 RVARSKQFVKL-------PSEEKSQSEDASTD 291
           R+A+SKQFVKL       P EE+++ E + ++
Sbjct: 262 RLAKSKQFVKLQAKEGLQPPEEEAEEEPSQSE 293

[Close]

BLAST of MELO3C003546.jh1 vs. TAIR 10
Match: AT4G09040.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 257.7 bits (657), Expect = 1.2e-68
Identity = 131/202 (64.85%), Postives = 163/202 (80.69%), Query Frame = 0


Query: 98  SRTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAAL 157
           S+TRL+AQNVPW STPEDIRSLFEKYG+V+D+E+SM+ K RNRGL F+ M SPEEA  AL
Sbjct: 32  SKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATAL 91

Query: 158 NNLESYEFEGRTLRLNYAKLKKEKP-SPPVKPKPV-TFNLFVANLPFEARAKDLREFFDS 217
            +LES E+EGR L+++YAK KK+K  +P   P PV TFNLFVANL FEARAK L+EFFD+
Sbjct: 92  KSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDA 151

Query: 218 GSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVK 277
            +GNVVS ++IFHENPRRSSGYGFV+FK KK AEAA+ EFQGK F+GR +R+A+SKQFVK
Sbjct: 152 DTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVK 211

Query: 278 L-------PSEEKSQSEDASTD 291
           L       P EE+++ E + ++
Sbjct: 212 LQAKEGLQPPEEEAEEEPSQSE 233

[Close]

BLAST of MELO3C003546.jh1 vs. TAIR 10
Match: AT2G35410.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 131.7 bits (330), Expect = 9.7e-31
Identity = 89/255 (34.90%), Postives = 135/255 (52.94%), Query Frame = 0


Query: 52  SLLSTSICHNPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDS 111
           SL S S     L+S++     K       TSQ+E    + +      + +L   N+PW  
Sbjct: 50  SLRSGSDNSRRLVSVLCSVAEKETSADEETSQEEKTEETQN---SNLKRKLFVFNLPWSM 109

Query: 112 TPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLR 171
           +  DI  LF + GTV +VE+      +NRG AFVTM S EEA AA++  ++++  GR + 
Sbjct: 110 SVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIIS 169

Query: 172 LNYA-KLKKEKPS-----PPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQI 231
           +++A + KK  P      P   P      L+V+NL ++AR+  LRE F +   N VSA++
Sbjct: 170 VSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARV 229

Query: 232 IFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSE 291
           +F +   RSSGYGFV+F  +++AE AI++  GK  MGR +        +K      S+SE
Sbjct: 230 VFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPIT-------LKFSLRSASESE 289

Query: 292 DASTDGVELANAAAE 301
           D   D VE  NA+ +
Sbjct: 290 DG--DSVEANNASED 292

[Close]

BLAST of MELO3C003546.jh1 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 101.3 bits (251), Expect = 1.4e-21
Identity = 86/307 (28.01%), Postives = 153/307 (49.84%), Query Frame = 0


Query: 33  NPSYPINGDFNLSVSRSSPSLLSTSICHNPLISIMAKRTSKFVFQF---ASTSQDEAVSS 92
           NP    + +  L    +  S    + C NPLI     R  +F       AS++ DE  +S
Sbjct: 25  NPLLSSHSNSQLFYRFTPKSFKLVANCPNPLILHSNIRRHRFFCAAETEASSADDEIQAS 84

Query: 93  -------------SPSDIEEFSRT--------RLLAQNVPWDSTPEDIRSLFEKYGTVLD 152
                           ++EE  +T        RL   N+P+  T  ++  +F + GTV+D
Sbjct: 85  VEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVD 144

Query: 153 VELSMYNKI--RNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKEKPSPPV 212
           V++ +Y+K+  R+RG  FVTMGS EEA  A+    S +  GRT+++N+ ++ +   +  +
Sbjct: 145 VQI-VYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVM 204

Query: 213 KPKPVTFN---------LFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGY 272
           + K    N         ++  NL +   ++ L++ F    G V+ A++I+  N  RS G+
Sbjct: 205 RTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPG-VLGAKVIYERNTGRSRGF 264

Query: 273 GFVAFKAKKDAEAAISEFQGKTFMGRSLRV----ARSKQFVKLPSEEKSQSEDASTDGVE 300
           GF++F++ ++ ++A++   G    GR+LR+     R K  V  PS E+ ++E+AS +  E
Sbjct: 265 GFISFESAENVQSALATMNGVEVEGRALRLNLASEREKPTVSPPSVEEGETEEASLESNE 324

[Close]

BLAST of MELO3C003546.jh1 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 86.7 bits (213), Expect = 3.6e-17
Identity = 76/272 (27.94%), Postives = 131/272 (48.16%), Query Frame = 0


Query: 10  SSSSILRS--KQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICHNPLISIM 69
           ++SS+L S  K HH   L    C+ + +  +      + S   P L+S+  C      + 
Sbjct: 2   AASSVLLSCFKSHHQPNLLH-GCNYSSNQTL---LRFNFSTPKPLLISSRSCSRRFRVLS 61

Query: 70  AKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLFEKYGTVL 129
              T K         + +  +S+  D      T+L   N+P++     +  + + +    
Sbjct: 62  ETITVKL-----EEEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPE 121

Query: 130 DVELSMYNKI--RNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKEKPSPP 189
            VE+ +YN+   ++RG AFVTM + E+    ++NL+  E+ GR L++N+A    +KP P 
Sbjct: 122 LVEV-LYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFA----DKPKPN 181

Query: 190 VKP--KPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFK 249
            +P        LFV NL +   ++ L   F    G+VV A+++F  +  RS GYGFV + 
Sbjct: 182 KEPLYPETEHKLFVGNLSWTVTSESLAGAFRE-CGDVVGARVVFDGDTGRSRGYGFVCYS 241

Query: 250 AKKDAEAAISEFQGKTFMGRSLRV--ARSKQF 274
           +K + E A+    G    GR++RV  A+ K+F
Sbjct: 242 SKAEMETALESLDGFELEGRAIRVNLAQGKKF 258

The following BLAST results are available for this feature:

BLAST of MELO3C003546.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466190.1	1.10e-205	100.00	PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >KAA0038685.1 ...	[more]
XP_004136268.1	1.92e-192	95.02	28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN60238.1 hypothetic...	[more]
XP_038897887.1	1.64e-191	94.68	31 kDa ribonucleoprotein, chloroplastic [Benincasa hispida]	[more]
XP_022937168.1	1.09e-173	86.38	28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata] >KAG6591682.1 ...	[more]
XP_022975867.1	1.80e-172	85.71	28 kDa ribonucleoprotein, chloroplastic [Cucurbita maxima]	[more]

BLAST of MELO3C003546.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39061	2.0e-20	28.01	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
P19682	4.9e-19	28.45	28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P19683	8.3e-19	30.50	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P28644	2.0e-17	30.85	28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1	[more]
P49314	1.1e-15	29.28	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]

BLAST of MELO3C003546.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TBD1	5.31e-206	100.00	31 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CS17	5.31e-206	100.00	31 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503681 ...	[more]
A0A0A0LEN0	9.30e-193	95.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889940 PE=4 SV=1	[more]
A0A6J1FF97	5.28e-174	86.38	28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1IE80	8.73e-173	85.71	28 kDa ribonucleoprotein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111476...	[more]

BLAST of MELO3C003546.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09040.1	1.5e-71	54.04	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G09040.2	1.2e-68	64.85	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G35410.1	9.7e-31	34.90	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	1.4e-21	28.01	chloroplast RNA-binding protein 33	[more]
AT1G60000.1	3.6e-17	27.94	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 194..268 e-value: 1.9E-20 score: 83.9 coord: 101..173 e-value: 8.0E-17 score: 71.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 105..171 e-value: 4.8E-14 score: 51.9 coord: 195..266 e-value: 5.4E-17 score: 61.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 193..272 score: 17.915731
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 100..177 score: 16.84124
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 67..180 e-value: 2.2E-21 score: 78.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 181..293 e-value: 7.8E-23 score: 83.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 276..301
None	No IPR available	PANTHER	PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	coord: 1..291
None	No IPR available	PANTHER	PTHR23003:SF35	OS08G0483200 PROTEIN	coord: 1..291
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 182..275
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 87..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003546.jh1.t1	MELO3C003546.jh1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding